miRDeep2

miRDeep home

Parameters used


miRDeep2 version2.0.0.8
Program call/Home/ii/phongphakk/mirdeep2_0_0_8/bin/miRDeep2.pl dmel.fa /Home/ii/phongphakk/test/genome/Drosophila_melanogaster.BDGP6.dna.toplevel.fa dmel_vs_genome.arf /Home/ii/phongphakk/test/data/mature_miRNAs_dmel.fa /Home/ii/phongphakk/test/data/mature_miRNAs_dsim.fa /Home/ii/phongphakk/test/data/precursors_miRNAs_dmel.fa -t d.melanogaster
Readsdmel.fa
Genome/Home/ii/phongphakk/test/genome/Drosophila_melanogaster.BDGP6.dna.toplevel.fa
Mappingsdmel_vs_genome.arf
Reference mature miRNAs/Home/ii/phongphakk/test/data/mature_miRNAs_dmel.fa
Other mature miRNAs/Home/ii/phongphakk/test/data/mature_miRNAs_dsim.fa
Speciesd.melanogaster


Survey of miRDeep2 performance for score cut-offs -10 to 10
novel miRNAsknown miRBase miRNAs
miRDeep2 scorefor details on how the log-odds score is calculated, see Friedlander et al., Nature Biotechnology, 2008. predicted by miRDeep2novel miRNA hairpins are here defined by not having any of the reference mature miRNAs mapping perfectly (full length, no mismatches). The numbers show how many novel miRNA hairpins have a score equal to or exceeding the cut-off. estimated false positivesnumber of false positive miRNA hairpins predicted at this cut-off, as estimated by the miRDeep2 controls (see Friedlander et al., Nature Biotechnology, 2008). Mean and standard deviation is estimated from 100 rounds of permuted controls. estimated true positivesthe number of true positive miRNA hairpins is estimated as t = total novel miRNAs - false positive novel miRNAs. The percentage of the predicted novel miRNAs that is estimated to be true positives is calculated as p = t / total novel miRNAs. The number of false positives is estimated from 100 rounds of permuted controls. In each of the 100 rounds, t and p are calculated, generating mean and standard deviation of t and p. The variable p can be used as an estimation of miRDeep2 positive predictive value at the score cut-off. in speciesnumber of reference mature miRNAs for that species given as input to miRDeep2. in datanumber of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of precursor candidates that have been excised from the genome by miRDeep2. detected by miRDeep2number of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of predicted miRNA hairpins that have a score equal to or exceeding the cut-off. The percentage of reference mature miRNAs in data that is detected by miRDeep2 is calculated as s = reference mature miRNAs detected / reference mature miRNAs in data. s can be used as an estimation of miRDeep2 sensitivity at the score cut-off. estimated signal-to-noisefor the given score cut-off, the signal-to-noise ratio is estimated as r = total miRNA hairpins reported / mean estimated false positive miRNA hairpins over 100 rounds of permuted controls. excision gearingthis is the minimum read stack height required for excising a potential miRNA precursor from the genome in this analysis.
10128 ± 34 ± 3 (34 ± 22%)438292205 (70%)13.73
9128 ± 34 ± 3 (33 ± 22%)438292206 (71%)13.73
8138 ± 35 ± 3 (37 ± 21%)438292206 (71%)13.63
7138 ± 35 ± 3 (36 ± 22%)438292208 (71%)13.63
6139 ± 35 ± 3 (35 ± 22%)438292210 (72%)13.43
5139 ± 34 ± 3 (33 ± 21%)438292215 (74%)13.33
4139 ± 34 ± 3 (31 ± 22%)438292220 (75%)13.13
31410 ± 34 ± 3 (30 ± 20%)438292220 (75%)123
21411 ± 43 ± 3 (24 ± 20%)438292220 (75%)10.83
11913 ± 46 ± 4 (33 ± 19%)438292220 (75%)93
02621 ± 56 ± 4 (22 ± 17%)438292227 (78%)63
-12747 ± 60 ± 0 (0 ± 0%)438292229 (78%)2.83
-23366 ± 80 ± 0 (0 ± 0%)438292235 (80%)2.23
-35987 ± 90 ± 0 (0 ± 0%)438292235 (80%)1.93
-474116 ± 100 ± 0 (0 ± 0%)438292236 (81%)1.63
-591175 ± 140 ± 0 (0 ± 0%)438292238 (82%)1.23
-6121222 ± 140 ± 0 (0 ± 0%)438292242 (83%)1.13
-7164255 ± 130 ± 0 (0 ± 0%)438292242 (83%)1.13
-8219282 ± 140 ± 0 (0 ± 0%)438292242 (83%)1.23
-9254300 ± 140 ± 0 (0 ± 0%)438292242 (83%)1.23
-10280314 ± 140 ± 1 (0 ± 0%)438292242 (83%)1.33





novel miRNAs predicted by miRDeep2


provisional idthis is a provisional miRNA name assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the reported miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA candidate is a true positivethe estimated probability that a predicted novel miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. rfam alertthis field indicates if the predicted miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). total read countthis is the sum of read counts for the predicted mature, loop and star miRNAs. mature read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the excised potential miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30630 1.7e+3 0.34 ± 0.22 3346 2583 447 316 yes blast uggcgcuucacaggcgcugga cagcgucagucgagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4925248..4925333:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30636 1.7e+3 0.34 ± 0.22 3346 2583 447 316 yes blast uggcgcuucacaggcgcugga cagcgucagucgagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926328..4926413:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30638 1.7e+3 0.34 ± 0.22 3346 2583 447 316 yes blast uggcgcuucacaggcgcugga cagcgucagucgagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926598..4926683:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30632 1.7e+3 0.34 ± 0.22 3346 2583 447 316 yes blast uggcgcuucacaggcgcugga cagcgucagucgagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4925788..4925873:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30642 1.5e+3 0.34 ± 0.22 3049 2583 447 19 yes blast uggcgcuucacaggcgcugga cagcgucagucaagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4927138..4927223:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30640 1.5e+3 0.34 ± 0.22 3049 2583 447 19 yes blast uggcgcuucacaggcgcugga cagcgucagucaagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926868..4926953:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30634 1.5e+3 0.34 ± 0.22 3049 2583 447 19 yes blast uggcgcuucacaggcgcugga cagcgucagucaagcggaagg uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926058..4926143:-
211000022280479_dna:scaffold_scaffold:BDGP6:211000022280479:1:4085:1_REF_35702 5.1e+2 0.34 ± 0.22 1016 286 725 5 no blast uuucgguaugccgaacaguguccac uggauucccgcuggaggagaacgacug uuucgguaugccgaacaguguccacaguggcacugcagguacuugguggagcucccccgcuugaucuggcugcuaacguggauucccgcuggaggagaacgacug 211000022280479_dna:scaffold_scaffold:BDGP6:211000022280479:1:4085:1_REF:2973..3078:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13106 2.3e+2 0.34 ± 0.22 488 480 0 8 no blast ucauugccuuauuaauuuuucacac uggaaaagucauaucuuggg uggaaaagucauaucuuggggcgcgaagugcggacagaagcacucagcaaucauugccuuauuaauuuuucacac 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:23485036..23485111:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17213 1.6e+2 0.34 ± 0.22 335 328 3 4 no blast ugauauggaucuucagguugaguaa uacaaaacauagauccaacagucgac ugauauggaucuucagguugaguaagaggugcuucccuugacagaaaccuauuuucaggacuuguuacaaaacauagauccaacagucgac 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:23922880..23922971:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13198 1.6e+2 0.34 ± 0.22 335 328 3 4 no blast ugauauggaucuucagguugaguaa uacaaaacauagauccaacagucgac ugauauggaucuucagguugaguaagaggugcuucccuugacagaaaccuauuuucaggacuuguuacaaaacauagauccaacagucgac 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:23899667..23899758:+
211000022278498_dna:scaffold_scaffold:BDGP6:211000022278498:1:13940:1_REF_34877 3.8e+1 0.34 ± 0.22 78 20 56 2 no blast gcauaucucauacugugucuauaga uuucgugguagggaugggcgu gcauaucucauacugugucuauagaucucgucgucuacccauggaauaccgagcuccucguggauggcggaauuuucgugguagggaugggcgu 211000022278498_dna:scaffold_scaffold:BDGP6:211000022278498:1:13940:1_REF:2707..2801:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2011 8.4 0.37 ± 0.21 15 12 0 3 yes blast uggacuuggucaccuuucugcugc ggcaauaagagugcauggaguccu uggacuuggucaccuuucugcugcaacagcaggcaauaagagugcauggaguccu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:1751417..1751472:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27413 3.7 0.30 ± 0.20 6 5 0 1 yes blast aagaacaacuacaacgacaaga uuguuguugcaguaguuucauuug uuguuguugcaguaguuucauuugccuugcaagagcaagcguacaagccgcaaagaacaacuacaacgacaaga X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:1947948..1948022:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21941 1.6 0.33 ± 0.19 111 111 0 0 yes blast gguucagccaagugcagcgacagcu uaagagcugcgcgaggcaaaacgagccau uaagagcugcgcgaggcaaaacgagccauuuccgaauggauuugguucagccaagugcagcgacagcu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:9778469..9778537:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16270 1.4 0.33 ± 0.19 27 26 1 0 yes blast cuucuugucaguuguccacaagg cuguggcagcugguaauugcc cuguggcagcugguaauugcccuggccuauuauucaggacuggaggcuucuugucaguuguccacaagg 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:5764257..5764326:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_24449 1.4 0.33 ± 0.19 923 912 1 10 yes blast ugauuuguugguagaagaagguuuc cuucugucggagcuaagagagcggg cuucugucggagcuaagagagcgggagagcaggagcgcgcucuuucuugauuuguugguagaagaagguuuc 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:3955273..3955345:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21248 1.4 0.33 ± 0.19 902 891 1 10 yes blast ugauuuguugguagaagaagguuuc cuucugucggagcuaagagagcggg cuucugucggagcuaagagagcgggagagcaggagcgcgcucuuucuugauuuguugguagaagaagguuuc 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:3784011..3784083:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_9371 1.4 0.33 ± 0.19 142 142 0 0 yes blast ugaccggaccaaagacacuagaa cuagugucuuugaccggaccaa ugaccggaccaaagacacuagaauaacuagaauauucuagugucuuugaccggaccaa 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:4804730..4804788:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22301 0.9 0.22 ± 0.17 2359 2359 0 0 yes blast ggggauguagcucagauggua cuauaagagugacauucauga cuauaagagugacauucaugacggggauguagcucagauggua 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:17668164..17668207:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_18880 0.7 0.22 ± 0.17 1242 1241 1 0 yes blast ugcuugcuugugugaguaaaaaca cgcuugcucacgccgagagcguaaaaaa cgcuugcucacgccgagagcguaaaaaaaucuaaaaauagaauuugcuugcuugugugaguaaaaaca 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:25999147..25999215:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27879 0.5 0.22 ± 0.17 10 10 0 0 yes blast aauggccacgcaacguccugca cagugcguuucguggccaucag cagugcguuucguggccaucaggcgcgauggcaaugcgucaauggccacgcaacguccugca X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15742150..15742212:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7651 0.4 0.22 ± 0.17 16 3 11 2 yes blast ugcuauuuuauguguguuauuuua uucgugcgugacgucagcgggauggu uucgugcgugacgucagcgggaugguguugcaaauuagcaucugcuaguuugccugucagguuugcuauuuuauguguguuauuuua 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:25270199..25270286:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30026 0.4 0.22 ± 0.17 16 3 11 2 yes blast ugcuauuuuauguguguuauuuua uucgugcgugacgucagcgggauggu uucgugcgugacgucagcgggaugguguugcaaauuagcaucugcuaguuugccugucagguuugcuauuuuauguguguuauuuua X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4052..4139:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30266 0.4 0.22 ± 0.17 16 3 11 2 yes blast ugcuauuuuauguguguuauuuua uucgugcgugacgucagcgggauggu uucgugcgugacgucagcgggaugguguugcaaauuagcaucugcuaguuugccugucagguuugcuauuuuauguguguuauuuua X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:77701..77788:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30164 0.4 0.22 ± 0.17 16 3 11 2 yes blast ugcuauuuuauguguguuauuuua uucgugcgugacgucagcgggauggu uucgugcgugacgucagcgggaugguguugcaaauuagcaucugcuaguuugccugucagguuugcuauuuuauguguguuauuuua X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:56023..56110:-



mature miRBase miRNAs detected by miRDeep2


tag idthis is a tag id assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the miRNA. miRDeep2 scorethe log-odds score assigned to the hairpin by miRDeep2 estimated probability that the miRNA is a true positivethe estimated probability that a predicted miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. For miRBase miRNAs, this reflects the support that the data at hand lends to the miRNA. rfam alertthis field indicates if the miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field). predicted mature seq. in accordance with miRBase mature seq.If the predicted miRDeep2 sequence overlaps with the miRBase annotated mature sequence than this is indicated by 'TRUE'. If the predicted miRDeep2 star sequence overlaps with the miRBase annotated mature sequence this is inidicated by 'STAR'. total read countthis is the sum of read counts for the mature, loop and star miRNAs. mature read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus mature miRNA, including 2 nts upstream and 5 nts downstream. loop read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus miRNA loop, including 2 nts upstream and 5 nts downstream. star read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus star miRNA, including 2 nts upstream and 5 nts downstream. significant randfold p-valuethis field indicates if the estimated randfold p-value of the miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004). mature miRBase miRNAthis field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output. example miRBase miRNA with the same seedthis field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed. UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). consensus mature sequencethis is the consensus mature miRNA sequence as inferred from the deep sequencing reads. consensus star sequencethis is the consensus star miRNA sequence as inferred from the deep sequencing reads. consensus precursor sequencethis is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors. precursor coordinateThe given precursor coordinates refer do absolute position in the mapped reference sequence
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_6733 6.0e+4 0.34 ± 0.22 STAR 119051 118711 1 339 yes dme-miR-14-5p_MIMAT0020798 dsi-miR-14_MIMAT0008848 blast ucagucuuuuucucucuccuau gggagcgagacggggacucacu gggagcgagacggggacucacugugcuuauuaaauagucagucuuuuucucucuccuau 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9553764..9553823:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_623 3.8e+4 0.34 ± 0.22 STAR 76091 74480 0 1611 yes dme-miR-124-5p_MIMAT0020813 dsi-miR-124_MIMAT0008847 blast uaaggcacgcggugaaugccaa gguauccacuguaggccuauaug gguauccacuguaggccuauauguauuuccaccauaaggcacgcggugaaugccaa 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:17566391..17566447:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2594 3.0e+4 0.34 ± 0.22 STAR 59360 48181 3 11176 yes dme-miR-2a-2-5p_MIMAT0020781 dsi-miR-13a_MIMAT0008881 blast uaucacagccagcuuugaugagcu ccucaucaagugguugugaua ccucaucaagugguugugauauggauacccaacgcauaucacagccagcuuugaugagcu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19569494..19569554:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11084 2.7e+4 0.34 ± 0.22 STAR 53509 52866 0 643 yes dme-miR-184-5p_MIMAT0000330 dsi-miR-184-3p_MIMAT0008904 blast uggacggagaacugauaagggc ccuuaucauucucucgccccgu ccuuaucauucucucgccccgugugcacuuaaagacaacuggacggagaacugauaagggc 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:13329419..13329480:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12313 2.6e+4 0.34 ± 0.22 STAR 52145 34742 0 17403 yes dme-miR-276a-5p_MIMAT0000336 dsi-miR-276b_MIMAT0008895 blast uaggaacuucauaccgugcucu agcgagguauagaguuccuacg agcgagguauagaguuccuacguucauuauaaacucguaggaacuucauaccgugcucu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:10365243..10365302:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1193 1.9e+4 0.34 ± 0.22 STAR 38238 37339 0 899 yes dme-miR-1-5p_MIMAT0020779 dsi-miR-1_MIMAT0008867 blast uggaauguaaagaaguauggag ccaugcuuccuugcauucaaua ccaugcuuccuugcauucaauaguuauauucaagcauauggaauguaaagaaguauggag 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:20487457..20487517:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2596 1.8e+4 0.34 ± 0.22 STAR 37128 36413 7 708 yes dme-miR-2a-1-5p_MIMAT0020780 dsi-miR-13a_MIMAT0008881 blast uaucacagccagcuuugaugagcu cucucaaagugguugugaaaug cucucaaagugguugugaaaugcauuuccgcuuugcgcggcauaucacagccagcuuugaugagcu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19569900..19569966:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22661 1.6e+4 0.34 ± 0.22 STAR 32055 29326 3 2726 yes dme-miR-996-5p_MIMAT0020895 dsi-miR-279_MIMAT0008896 blast ugacuagauuucaugcucgucua ggcgaacauggaucuagugcacg ggcgaacauggaucuagugcacggugguucaugauuaaguucgugacuagauuucaugcucgucua 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:29217200..29217266:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2598 1.5e+4 0.34 ± 0.22 STAR 29678 28520 91 1067 yes dme-miR-2b-2-5p_MIMAT0020783 dsi-miR-13a_MIMAT0008881 blast uaucacagccagcuuugaggagcg uucuucaaagugguugugaaaug uucuucaaagugguugugaaauguuugccuuuuuaugccuauucauaucacagccagcuuugaggagcg 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19570187..19570256:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22563 1.5e+4 0.34 ± 0.22 STAR 29455 25884 2 3569 yes dme-miR-92a-5p_MIMAT0020802 dsi-miR-92a_MIMAT0008898 blast cauugcacuugucccggccuau aggacgggaaggugucaacguu aggacgggaaggugucaacguuuugcauuucgaauaaacauugcacuugucccggccuau 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:25646521..25646581:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2242 1.4e+4 0.34 ± 0.22 STAR 28798 28775 0 23 yes dme-miR-2b-1-5p_MIMAT0020782 dsi-miR-13a_MIMAT0008881 blast uaucacagccagcuuugaggagcg gucuucaaaguggcagugacaug gucuucaaaguggcagugacauguugucaacaauauucauaucacagccagcuuugaggagcg 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:8258621..8258684:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12044 1.4e+4 0.34 ± 0.22 TRUE 28349 24512 6 3831 yes dme-miR-282-5p_MIMAT0000346 blast uagccucuacuaggcuuugucu acauagccuauaagagguuagg uagccucuacuaggcuuugucugugcauucgaaagccgaucagacauagccuauaagagguuagg 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:3251037..3251102:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11393 1.3e+4 0.34 ± 0.22 TRUE 27399 19701 2 7696 yes dme-miR-5-5p_MIMAT0000110 dsi-miR-5_MIMAT0008890 blast aaaggaacgaucguugugauaug uaucacagugauuuuccuuuaua aaaggaacgaucguugugauaugaguuguuuccuaacauaucacagugauuuuccuuuaua 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19661161..19661222:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7067 1.3e+4 0.34 ± 0.22 STAR 25981 23479 0 2502 yes dme-miR-8-5p_MIMAT0020791 dsi-miR-8_MIMAT0008889 blast uaauacugucagguaaagauguc caucuuaccgggcagcauuaga caucuuaccgggcagcauuagauccuuuuuauaacucuaauacugucagguaaagauguc 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:16831446..16831506:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27665 1.0e+4 0.34 ± 0.22 STAR 21549 21081 0 468 yes dme-miR-13b-2-5p_MIMAT0020797 dsi-miR-13a_MIMAT0008881 blast uaucacagccauuuugacgaguu gcgucaaaaugacugugagcuaug gcgucaaaaugacugugagcuauguggauuugacuucauaucacagccauuuugacgaguu X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:9091236..9091297:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22659 1.0e+4 0.34 ± 0.22 STAR 21496 21242 1 253 yes dme-miR-279-5p_MIMAT0020807 dsi-miR-279_MIMAT0008896 blast ugacuagauccacacucauuaa aguggguggggguccaguguuucaca aguggguggggguccaguguuucacauugauuuucuuaguauuugugacuagauccacacucauuaa 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:29215605..29215672:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25284 1.0e+4 0.34 ± 0.22 STAR 21106 21081 0 25 yes dme-miR-13b-1-5p_MIMAT0020796 dsi-miR-13a_MIMAT0008881 blast uaucacagccauuuugacgaguu ucguuaaaauguuugugaacuuaug ucguuaaaauguuugugaacuuauguauucacaaucauaucacagccauuuugacgaguu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:15417410..15417470:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_294 1.0e+4 0.34 ± 0.22 TRUE 20547 19248 0 1299 no dme-miR-305-5p_MIMAT0000391 dsi-miR-305_MIMAT0008860 blast auuguacuucaucaggugcucu cggcacauguugaaguacacuca auuguacuucaucaggugcucuggugugucucguaacccggcacauguugaaguacacuca 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425978..7426039:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27868 1.0e+4 0.34 ± 0.22 TRUE 20464 20276 24 164 yes dme-miR-12-5p_MIMAT0000117 dsi-miR-960_MIMAT0012495 blast ugaguauuacaucagguacuggu caguacuuaugucauacuacgc ugaguauuacaucagguacuggugugccuuaaauccaacaaccaguacuuaugucauacuacgc X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15509478..15509542:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25426 1.0e+4 0.34 ± 0.22 STAR 20435 19912 0 523 yes dme-miR-11-5p_MIMAT0020793 dsi-miR-13a_MIMAT0008881 blast caucacagucugaguucuugcu caagaacuuucucugugacccg caagaacuuucucugugacccgcguguacuuaaaagccgcaucacagucugaguucuugcu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:21622502..21622563:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12312 9.9e+3 0.34 ± 0.22 TRUE 19481 17403 0 2078 yes dme-miR-276a-5p_MIMAT0000336 blast agcgagguauagaguuccuacg uaggaacuuaauaccgugcucu agcgagguauagaguuccuacguuccuauauucagucguaggaacuuaauaccgugcucu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:10319807..10319867:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12640 9.7e+3 0.34 ± 0.22 TRUE 19160 18399 0 761 yes dme-miR-9a-5p_MIMAT0000114 dsi-miR-9a_MIMAT0008843 blast ucuuugguuaucuagcuguauga uaaagcuagcuuaccgaaguua ucuuugguuaucuagcuguaugagugauaaauaacgucauaaagcuagcuuaccgaaguua 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:19565139..19565200:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11400 9.5e+3 0.34 ± 0.22 STAR 18809 17643 0 1166 yes dme-miR-3-5p_MIMAT0020784 dsi-miR-3_MIMAT0008862 blast ucacugggcaaagugugucuca ggaugcaucuugugcaguuaug ggaugcaucuugugcaguuauguuucaaucucacaucacugggcaaagugugucuca 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19661599..19661656:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11396 9.2e+3 0.34 ± 0.22 STAR 18137 14277 0 3860 yes dme-miR-4-5p_MIMAT0020785 dsi-miR-4_MIMAT0008842 blast auaaagcuagacaaccauugaa cuuuggucguccagccuuagguga cuuuggucguccagccuuaggugauuuuuccggucauaaagcuagacaaccauugaa 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19661299..19661356:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11024 8.9e+3 0.34 ± 0.22 STAR 17525 17177 0 348 no dme-miR-988-5p_MIMAT0020886 dsi-miR-988-3p_MIMAT0012436 blast ccccuuguugcaaaccucacg gugugauuuguagcaaagugau gugugauuuguagcaaagugauauguauuugaucauccccuuguugcaaaccucacg 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12158888..12158945:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21957 8.0e+3 0.34 ± 0.22 STAR 15696 15025 5 666 yes dme-miR-277-5p_MIMAT0020804 dsi-miR-277_MIMAT0008850 blast uaaaugcacuaucugguacgaca cgugucaggagugcauuugca cgugucaggagugcauuugcacugaaacuaucugaagcauguaaaugcacuaucugguacgaca 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10100038..10100102:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11454 7.6e+3 0.34 ± 0.22 STAR 14952 14920 0 32 yes dme-miR-310-5p_MIMAT0020836 dsi-miR-92a_MIMAT0008898 blast uauugcacacuucccggccuuu agggcgggucgugugucagugua agggcgggucgugugucaguguauuuauaucuuagcuauauugcacacuucccggccuuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20583765..20583825:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25215 7.1e+3 0.34 ± 0.22 TRUE 14004 13473 1 530 yes dme-miR-252-5p_MIMAT0005516 dsi-miR-252-5p_MIMAT0012465 blast cuaaguacuagugccgcaggag uccugcugcccaagugcuuauu cuaaguacuagugccgcaggaguuagguucguguccgcaauaccuccugcugcccaagugcuuauu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:13464230..13464296:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_11905 7.0e+3 0.34 ± 0.22 STAR 13855 11745 0 2110 yes dme-bantam-5p_MIMAT0020823 dsi-bantam_MIMAT0008861 blast ugagaucauuuugaaagcugauu ccgguuuucgauuugguuugacu ccgguuuucgauuugguuugacuguuuuucauacaagugagaucauuuugaaagcugauu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:642221..642281:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11458 5.8e+3 0.34 ± 0.22 STAR 11407 10063 0 1344 yes dme-miR-312-5p_MIMAT0020838 dsi-miR-92a_MIMAT0008898 blast uauugcacuugagacggccuga ugguucgucacaagggcaauucu ugguucgucacaagggcaauucugcauuuuuuaacuaguauugcacuugagacggccuga 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20584057..20584117:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21955 5.6e+3 0.34 ± 0.22 STAR 10987 10950 19 18 yes dme-miR-317-5p_MIMAT0020843 dsi-miR-317_MIMAT0008863 blast ugaacacagcuggugguaucc ggauacacccugugcucgcu ggauacacccugugcucgcuuugaaugaaaugcaagcaagugaacacagcuggugguaucc 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10091140..10091201:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_552 5.4e+3 0.34 ± 0.22 TRUE 10755 10358 1 396 yes dme-miR-9b-5p_MIMAT0000395 dsi-miR-9a_MIMAT0008843 blast ucuuuggugauuuuagcuguau uagagcuuuauuaccaaaaacc ucuuuggugauuuuagcuguaugguguuuauguauauuccauagagcuuuauuaccaaaaacc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698757..16698820:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11402 5.0e+3 0.34 ± 0.22 STAR 9908 9181 0 727 no dme-miR-309-5p_MIMAT0020835 dsi-miR-3_MIMAT0008862 blast gcacuggguaaaguuuguccua cgacaaaccuuguucgguuuug cgacaaaccuuguucgguuuugccaauuuccaagccagcacuggguaaaguuuguccua 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19661709..19661768:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7316 4.7e+3 0.34 ± 0.22 TRUE 9392 8606 28 758 yes dme-miR-7-5p_MIMAT0000112 dsi-miR-7_MIMAT0008901 blast uggaagacuagugauuuuguuguu caauaaaucccuugucuucuua uggaagacuagugauuuuguuguuuggucuuugguaauaacaauaaaucccuugucuucuua 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20606080..20606142:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22399 4.6e+3 0.34 ± 0.22 TRUE 9073 8309 0 764 yes dme-miR-995-3p_MIMAT0005514 dsi-miR-285_MIMAT0008888 blast uagcaccacaugauucggcuu gcccgaauuaugugggagcugcg gcccgaauuaugugggagcugcgccguuuccguaauccguagcaccacaugauucggcuu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:20735937..20735997:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_549 4.2e+3 0.34 ± 0.22 STAR 8336 8203 1 132 yes dme-miR-79-5p_MIMAT0020814 blast uaaagcuagauuaccaaagcau gcuuuggcgcuuuagcuguauga gcuuuggcgcuuuagcuguaugauagauuuaaacuacuucauaaagcuagauuaccaaagcau 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698571..16698634:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_546 4.0e+3 0.34 ± 0.22 TRUE 7950 6807 5 1138 yes dme-miR-9c-5p_MIMAT0000392 dsi-miR-9a_MIMAT0008843 blast ucuuugguauucuagcuguaga uaaagcuuuuauaccaaagcuc ucuuugguauucuagcuguagauuguuucacgcacauuguauaucaucuaaagcuuuuauaccaaagcuc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16697935..16698005:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11459 3.6e+3 0.34 ± 0.22 TRUE 7118 6521 0 597 yes dme-miR-313-5p_MIMAT0020839 blast ugcugcggaugggggcaguacu uauugcacuuuucacagcccga ugcugcggaugggggcaguacuguuuuuuuaacauugaguauugcacuuuucacagcccga 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20584193..20584254:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11456 3.4e+3 0.34 ± 0.22 STAR 6855 6639 0 216 no dme-miR-311-5p_MIMAT0020837 dsi-miR-92a_MIMAT0008898 blast uauugcacauucaccggccuga cggacgguauauggguuaauauu cggacgguauauggguuaauauuucauuugucgaauauauugcacauucaccggccuga 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20583887..20583946:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22565 3.4e+3 0.34 ± 0.22 STAR 6838 5884 31 923 yes dme-miR-92b-5p_MIMAT0020819 dsi-miR-92a_MIMAT0008898 blast aauugcacuagucccggccugc aggccgugcccagugcuuauuug aggccgugcccagugcuuauuuguugcauuuucgaaauacaaauugcacuagucccggccugc 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:25651415..25651478:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_548 3.4e+3 0.34 ± 0.22 TRUE 6746 5828 0 918 yes dme-miR-306-5p_MIMAT0000393 dsi-miR-275_MIMAT0008880 blast ucagguacuuagugacucuca gggggucacucugugccugug ucagguacuuagugacucucaaugcuuuugacauuuugggggucacucugugccugug 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698417..16698475:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_24896 2.9e+3 0.34 ± 0.22 STAR 5871 4351 2 1518 yes dme-miR-10-5p_MIMAT0000115 dsi-miR-1006-3p_MIMAT0012444 blast caaauucgguucuagagagguuu acccuguagauccgaauuuguu acccuguagauccgaauuuguuuuauacuagcuuuaaggacaaauucgguucuagagagguuu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:6809511..6809574:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16828 2.9e+3 0.34 ± 0.22 STAR 5755 5147 0 608 yes dme-miR-958-5p_MIMAT0020852 dsi-miR-958-3p_MIMAT0012446 blast ugagauucuucuauucuacuuu aguagaauagcaggcuuaucaca aguagaauagcaggcuuaucacauguuuaauucaaucugcugugagauucuucuauucuacuuu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:22669301..22669365:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11387 2.4e+3 0.34 ± 0.22 STAR 4756 4560 5 191 yes dme-miR-6-3p_MIMAT0000111 blast agggaacgguugcugaugaugua uaucacaguggcuguucuuuuu agggaacgguugcugaugauguaguuugaaacucucacaauuuauaucacaguggcuguucuuuuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19660721..19660787:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22274 2.0e+3 0.34 ± 0.22 TRUE 4110 3543 0 567 yes dme-miR-iab-4-5p_MIMAT0000412 dsi-miR-iab-4-5p_MIMAT0008855 blast acguauacugaauguauccuga cgguauaccuucaguauacguaa acguauacugaauguauccugaguguauccuauccgguauaccuucaguauacguaa 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:16856280..16856337:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_640 2.0e+3 0.34 ± 0.22 TRUE 4071 3991 0 80 yes dme-let-7-5p_MIMAT0000396 dsi-let-7_MIMAT0008876 blast ugagguaguagguuguauagu cuauacaaugugcuagcuuucu ugagguaguagguuguauaguaguaauuacacaucauacuauacaaugugcuagcuuucu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18472043..18472103:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21967 2.0e+3 0.34 ± 0.22 STAR 4069 4041 0 28 yes dme-miR-318-5p_MIMAT0020844 dsi-miR-3_MIMAT0008862 blast ucacugggcuuuguuuaucuca ggauacacacaguucaguuuug ggauacacacaguucaguuuugucacacuucaagcaucacugggcuuuguuuaucuca 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10408307..10408365:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11142 2.0e+3 0.34 ± 0.22 STAR 4061 3430 11 620 yes dme-miR-308-5p_MIMAT0020833 dsi-miR-13a_MIMAT0008881 blast aaucacaggauuauacugugag cgcaguauauuuuuguguuuug cgcaguauauuuuuguguuuuguuucguuuugcaauccaaaucacaggauuauacugugag 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:14215801..14215862:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11391 1.9e+3 0.34 ± 0.22 TRUE 3916 3712 14 190 yes dme-miR-6-1-5p_MIMAT0020787 blast agggaauaguugcugugcugua uaucacaguggcuguucuuuuu agggaauaguugcugugcuguaaguuaauauaccauaucuauaucacaguggcuguucuuuuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19661011..19661074:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2381 1.7e+3 0.34 ± 0.22 TRUE 3421 3214 0 207 yes dme-miR-263a-5p_MIMAT0000319 blast aauggcacuggaagaauucacggg cgugaucucuuaguggcaucua aauggcacuggaagaauucacgggguaauuuuuauacaacccgugaucucuuaguggcaucua 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:11953423..11953486:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21966 1.6e+3 0.34 ± 0.22 TRUE 3176 3050 0 126 yes dme-miR-994-5p_MIMAT0005513 blast cuaaggaaauaguagccgugau cacaguugcuguuucuuuuagau cuaaggaaauaguagccgugauuuuacccaagaauuuuucacauaucacaguugcuguuucuuuuagau 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10408147..10408216:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_642 1.5e+3 0.34 ± 0.22 TRUE 2990 2983 0 7 no dme-miR-125-5p_MIMAT0000397 dsi-miR-125_MIMAT0008846 blast ucccugagacccuaacuuguga acaaguuuugaucuccgguau ucccugagacccuaacuugugacuuuuaauaccaguuucacaaguuuugaucuccgguau 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18472342..18472402:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7025 1.5e+3 0.34 ± 0.22 STAR 2937 2852 0 85 yes dme-miR-278-5p_MIMAT0020805 dsi-miR-278_MIMAT0008891 blast ucggugggacuuucguccguuu ccggaugaugguucacaacgacc ccggaugaugguucacaacgaccgugucauuuaaacgggucggugggacuuucguccguuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:15657082..15657143:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11389 1.4e+3 0.34 ± 0.22 TRUE 2813 2623 0 190 yes dme-miR-6-2-5p_MIMAT0020788 dsi-miR-6-5p_MIMAT0015283 blast agggaacuucugcugcugauaua uaucacaguggcuguucuuuuu agggaacuucugcugcugauauauuauugaaaaacuacuauaucacaguggcuguucuuuuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:19660873..19660935:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25286 1.3e+3 0.34 ± 0.22 STAR 2677 2589 4 84 yes dme-miR-13a-5p_MIMAT0020795 dsi-miR-13a_MIMAT0008881 blast uaucacagccauuuugaugaguu cuccucaaaggguugugaaaug cuccucaaaggguugugaaaugucgacuauuaucuacucauaucacagccauuuugaugaguu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:15417546..15417609:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11032 1.1e+3 0.34 ± 0.22 STAR 2223 1808 0 415 yes dme-miR-281-2-5p_MIMAT0000349 dsi-miR-281-3p_MIMAT0008906 blast ugucauggaauugcucucuuugu aagagagcuauccgucgacaguc aagagagcuauccgucgacagucaaguuaagaccgauuguaauacugucauggaauugcucucuuugu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12170162..12170230:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30540 1.1e+3 0.34 ± 0.22 STAR 2194 2186 0 8 yes dme-miR-981-5p_MIMAT0020878 dsi-miR-981-3p_MIMAT0012486 blast uucguugucgacgaaaccugca cggguuucguuagcagcgggcu cggguuucguuagcagcgggcuguuuuaauaaauucaacaaguucguugucgacgaaaccugca X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:1788875..1788939:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11034 9.6e+2 0.34 ± 0.22 STAR 1882 1808 0 74 yes dme-miR-281-1-5p_MIMAT0000344 dsi-miR-281-3p_MIMAT0008906 blast ugucauggaauugcucucuuugu aaagagagcuguccgucgaca aaagagagcuguccgucgacaguccagaaacuauuuaauaucacugucauggaauugcucucuuugu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12170382..12170449:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22551 9.1e+2 0.34 ± 0.22 STAR 1793 1746 0 47 no dme-miR-1003-5p_MIMAT0020902 dsi-miR-1003-3p_MIMAT0012428 blast ucucacauuuacauauucacag guggguaucuggaugugguugg guggguaucuggaugugguuggcucuggcgguccucucacauuuacauauucacag 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:24658604..24658660:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12644 8.4e+2 0.34 ± 0.22 TRUE 1654 1461 40 153 yes dme-miR-33-5p_MIMAT0000342 blast gugcauuguagucgcauuguc caauacaacuucagugcaagcu gugcauuguagucgcauugucugucccaauugcuucaggcaauacaacuucagugcaagcu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:19797985..19798046:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30623 7.6e+2 0.34 ± 0.22 TRUE 1507 1503 0 4 yes dme-miR-984-5p_MIMAT0005500 blast ugagguaaauacgguuggaauuu auccaaccgaauuuggcucggcg ugagguaaauacgguuggaauuuugucuuuuaacuauaaauccaaccgaauuuggcucggcg X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4368658..4368720:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1954 7.6e+2 0.34 ± 0.22 STAR 1489 1063 63 363 yes dme-miR-965-5p_MIMAT0020861 dsi-miR-965-3p_MIMAT0012472 blast uaagcguauagcuuuuccccuu gggguaaaacuguacguuauaug gggguaaaacuguacguuauaugugcccuucugugauauucauaagcguauagcuuuuccccuu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:243054..243118:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28017 7.4e+2 0.34 ± 0.22 STAR 1449 1405 11 33 yes dme-miR-977-5p_MIMAT0020874 dsi-miR-977_MIMAT0012423 blast ugagauauucacguugucuaa uagauaacucgaauaucacauc uagauaacucgaauaucacaucuucaguguucgaaaucugaugagauauucacguugucuaa X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19559045..19559107:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27781 7.2e+2 0.34 ± 0.22 STAR 1423 1404 0 19 yes dme-miR-970-5p_MIMAT0020867 dsi-miR-970-3p_MIMAT0012488 blast ucauaagacacacgcggcuau agcuagcggguguuuuauuuggua agcuagcggguguuuuauuugguagcuguaaugauuugaaucuaucauaagacacacgcggcuau X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:12636351..12636416:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2434 7.2e+2 0.34 ± 0.22 STAR 1443 823 0 620 no dme-miR-1002-5p_MIMAT0005483 blast gcauuguaugaccuacuuaacu uuaaguaguggauacaaagggcga uuaaguaguggauacaaagggcgauuugauauaaaagugucgcauuguaugaccuacuuaacu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13747620..13747683:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_10888 6.5e+2 0.34 ± 0.22 STAR 1279 1083 1 195 yes dme-miR-307a-5p_MIMAT0020832 dsi-miR-307_MIMAT0008884 blast ucacaaccuccuugagugagcga acucacucaaccugggugugau acucacucaaccugggugugauguuauuucgauaugguauccaucacaaccuccuugagugagcga 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9621260..9621326:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2436 6.3e+2 0.34 ± 0.22 STAR 1254 966 0 288 yes dme-miR-968-5p_MIMAT0005484 blast accuuuugauguacuacuuuaa uaaguaguauccauuaaaggguug uaaguaguauccauuaaaggguuguucucaacaugcaaaucaaccuuuugauguacuacuuuaa 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13747760..13747824:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12616 5.4e+2 0.34 ± 0.22 TRUE 1054 1013 0 41 yes dme-miR-315-5p_MIMAT0000407 dsi-miR-315_MIMAT0008870 blast uuuugauuguugcucagaaagcc cuuucgagcaauaauugaaacc uuuugauuguugcucagaaagcccucauuguuuaccaguuggcuuucgagcaauaauugaaacc 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:18860981..18861045:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12210 4.9e+2 0.34 ± 0.22 TRUE 971 913 0 58 yes dme-miR-190-5p_MIMAT0005467 dsi-miR-190-5p_MIMAT0012449 blast agauauguuugauauucuugguug cccaggaaucaaacauauuauu agauauguuugauauucuugguuguuucauucaaaaguucacccaggaaucaaacauauuauu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:8571821..8571884:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25563 4.9e+2 0.34 ± 0.22 TRUE 966 840 2 124 yes dme-miR-1000-5p_MIMAT0005520 dsi-miR-1000-5p_MIMAT0012457 blast auauuguccugucacagcagua cugcugggucggggcauuaaca auauuguccugucacagcaguauuguaacacuauauuauaguuuacugcugggucggggcauuaaca 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:25588877..25588944:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25432 4.7e+2 0.34 ± 0.22 STAR 928 897 0 31 yes dme-miR-999-5p_MIMAT0020899 dsi-miR-999-3p_MIMAT0012456 blast uguuaacuguaagacugugucu acauagucauacggugaauguu acauagucauacggugaauguuguguauuggagaccaauguuaacuguaagacugugucu 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:21798248..21798308:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16554 4.6e+2 0.34 ± 0.22 STAR 916 372 0 544 yes dme-miR-263b-5p_MIMAT0000362 blast gugguucugcgggugccaaaac cuuggcacugggagaauucacag cuuggcacugggagaauucacaguugacuuuauuauucugugguucugcgggugccaaaac 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:15843419..15843480:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11466 4.5e+2 0.34 ± 0.22 STAR 902 854 0 48 yes dme-miR-992-5p_MIMAT0020891 blast aguacacguuucugguacuaag ugguaucagcaaaguguuauuuu ugguaucagcaaaguguuauuuuuuauguuuauguaaaguacacguuucugguacuaag 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20585331..20585390:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30432 4.2e+2 0.34 ± 0.22 STAR 834 786 0 48 yes dme-miR-980-5p_MIMAT0020877 dsi-miR-980-3p_MIMAT0012482 blast uagcugccuugugaagggcuua aguuuuucauuuggccuggcuagc aguuuuucauuuggccuggcuagcuuacuccuuuuuaaauauugcuagcugccuugugaagggcuua X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:280187..280254:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27864 4.1e+2 0.34 ± 0.22 STAR 822 643 3 176 yes dme-miR-283-3p_MIMAT0020810 blast aaauaucagcugguaauucuggg cggaauuucaguugguaucgac aaauaucagcugguaauucugggagcuaagccuaaauaugaaacacucggaauuucaguugguaucgac X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15507975..15508044:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_49 3.6e+2 0.34 ± 0.22 TRUE 712 608 0 104 yes dme-miR-375-3p_MIMAT0005472 dsi-miR-375-3p_MIMAT0012490 blast uuuguucguuuggcuuaaguua acuugggccaagggaaugcaaacu acuugggccaagggaaugcaaacugugaucaucccgaaaguuuguucguuuggcuuaaguua 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:857555..857617:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1195 3.6e+2 0.34 ± 0.22 STAR 704 679 0 25 yes dme-miR-133-5p_MIMAT0020806 dsi-miR-133_MIMAT0008900 blast uugguccccuucaaccagcugu agcugguugacaucgggucagau agcugguugacaucgggucagaucuguuuuucaagcauuugguccccuucaaccagcugu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:20616634..20616694:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_6674 3.3e+2 0.34 ± 0.22 TRUE 650 624 2 24 no dme-miR-986-5p_MIMAT0005503 dsi-miR-986-5p_MIMAT0012431 blast ucucgaauagcguugugacuga agcggcgaggcuauucaaguaa ucucgaauagcguugugacugagguaacugcgcaucgaaucuacucagcggcgaggcuauucaaguaa 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:8444999..8445067:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16795 3.0e+2 0.34 ± 0.22 TRUE 597 489 0 108 yes dme-miR-316-5p_MIMAT0000408 dsi-miR-316_MIMAT0008869 blast ugucuuuuuccgcuuacuggcg acaggaaagggaaaaaggcgua ugucuuuuuccgcuuacuggcguuucaauuccacaacgacaggaaagggaaaaaggcgua 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:21668727..21668787:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12341 2.8e+2 0.34 ± 0.22 STAR 552 533 0 19 no dme-miR-314-5p_MIMAT0020840 dsi-miR-314_MIMAT0008864 blast uauucgagccaauaaguucgg guguggcuucgaacuuac guguggcuucgaacuuaccuaguugaggaaaacucccaugucggauuuuguuaccucugguauucgagccaauaaguucgg 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11773020..11773101:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_212 2.3e+2 0.34 ± 0.22 TRUE 462 441 0 21 yes dme-miR-964-5p_MIMAT0005478 dsi-miR-964-5p_MIMAT0012475 blast uuagaauaggggagcuuaacuu guuaaaagccucuguucuaag uuagaauaggggagcuuaacuuauguuuuugauguuuaaguuaaaagccucuguucuaag 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5642126..5642186:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27866 2.2e+2 0.34 ± 0.22 TRUE 425 398 11 16 yes dme-miR-304-5p_MIMAT0000390 dsi-miR-304_MIMAT0008882 blast uaaucucaauuuguaaaugugag cacuuugcaauuggagauugcu uaaucucaauuuguaaaugugagcgguuuaagccauuugacgcacucacuuugcaauuggagauugcu X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15508969..15509037:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_6777 2.1e+2 0.34 ± 0.22 STAR 420 412 0 8 yes dme-miR-1008-5p_MIMAT0032028 blast ucacagcuuuuuguguuuacag guaaauaucuaaaguugaacu guaaauaucuaaaguugaacuuggccaauggcaagucacagcuuuuuguguuuacag 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:10885532..10885589:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30617 1.9e+2 0.34 ± 0.22 TRUE 390 348 0 42 yes dme-miR-303-5p_MIMAT0000388 blast uagguuucacaggaaacugguu cuaguuuccucuaaaauccuaa uagguuucacaggaaacugguuuaauaacgaaaacuaguuuccucuaaaauccuaa X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4366184..4366240:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2330 1.9e+2 0.34 ± 0.22 STAR 377 368 0 9 yes dme-miR-87-5p_MIMAT0020821 dsi-miR-87_MIMAT0008844 blast uugagcaaaauuucagguguguga ucgcgccuguaucuugcugaac ucgcgccuguaucuugcugaaccgcugccauuauggccaacgauccgguugagcaaaauuucagguguguga 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:9950432..9950504:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28019 1.8e+2 0.34 ± 0.22 STAR 352 282 0 70 yes dme-miR-978-5p_MIMAT0020875 dsi-miR-978a_MIMAT0012424 blast uguccagugccguaaauugcag ugcaaucuacgccacuggcuuacg ugcaaucuacgccacuggcuuacguugcaaucgaaaaucguguccagugccguaaauugcag X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19561250..19561312:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_210 1.7e+2 0.34 ± 0.22 TRUE 346 336 0 10 yes dme-miR-963-5p_MIMAT0005477 dsi-miR-963-5p_MIMAT0012473 blast acaagguaaauaucagguuguuuc aacaucuguauauaccuuuguuc acaagguaaauaucagguuguuuccuguauucgaucgaaacaucuguauauaccuuuguuc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5642004..5642065:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_276 1.6e+2 0.34 ± 0.22 TRUE 313 304 0 9 yes dme-miR-932-5p_MIMAT0005479 dsi-miR-932-5p_MIMAT0012477 blast ucaauuccguagugcauugcagu ugcaagcgcugcggauuuggca ucaauuccguagugcauugcaguguguuucauuauuuacugcaagcgcugcggauuuggca 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:6902076..6902137:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12340 1.5e+2 0.34 ± 0.22 TRUE 311 309 0 2 yes dme-miR-274-5p_MIMAT0000332 blast uuugugaccgacacuaacgggua cucguuuuugcgaucacaaauuau uuugugaccgacacuaacggguaauuguuuggccgccaggauuacucguuuuugcgaucacaaauuau 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11656936..11657004:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28014 1.5e+2 0.34 ± 0.22 TRUE 305 295 0 10 yes dme-miR-975-5p_MIMAT0005491 dsi-miR-975_MIMAT0012501 blast uaaacacuuccuacauccuguau acagaugugggagucguuugc uaaacacuuccuacauccuguauguguuuugcauccgguacagaugugggagucguuugc X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19558767..19558827:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30615 1.3e+2 0.34 ± 0.22 STAR 267 249 0 18 yes dme-miR-982-3p_MIMAT0020879 blast uccuggacaaauaugaaguaaau uuacuugauauucauccuugaac uccuggacaaauaugaaguaaauuguuuuuaugcaucaauuacuugauauucauccuugaac X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4365821..4365883:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30621 1.2e+2 0.34 ± 0.22 TRUE 242 120 0 122 yes dme-miR-983-5p_MIMAT0005499 blast auaauacguuucgaacuaauga auuagguaguuacgcauuaucu auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4368503..4368561:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_10873 1.2e+2 0.34 ± 0.22 TRUE 234 231 0 3 yes dme-miR-987-5p_MIMAT0005504 dsi-miR-987-5p_MIMAT0012433 blast uaaaguaaauagucuggauugaug aucaacaggcauuuacuucaa uaaaguaaauagucuggauugaugaaaguugcauucgagaauucaucaacaggcauuuacuucaa 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9313037..9313102:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30619 1.2e+2 0.34 ± 0.22 TRUE 242 120 0 122 yes dme-miR-983-5p_MIMAT0005499 blast auaauacguuucgaacuaauga auuagguaguuacgcauuaucu auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4368324..4368382:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16472 1.0e+2 0.34 ± 0.22 STAR 207 205 0 2 yes dme-miR-285-5p_MIMAT0020817 dsi-miR-285_MIMAT0008888 blast uagcaccauucgaaaucagugcu aacugagaucgauuggugcau aacugagaucgauuggugcauagauaucaggagaacccacucaauuuaacucuagcaccauucgaaaucagugcu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11946105..11946180:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27799 9.0e+1 0.34 ± 0.22 STAR 175 174 0 1 yes dme-miR-971-5p_MIMAT0020868 blast uugguguuacuucuuacaguga gcuguaaauuguaaucaucaaagc gcuguaaauuguaaucaucaaagcguuuucucagagccgcuugguguuacuucuuacaguga X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:13062090..13062152:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_208 8.8e+1 0.34 ± 0.22 TRUE 167 128 0 39 yes dme-miR-962-5p_MIMAT0005476 dsi-miR-962_MIMAT0012496 blast auaagguagagaaauugaugcuguc acuucaguuucauuaccuuuca auaagguagagaaauugaugcugucuacacuauucagacuucaguuucauuaccuuuca 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5641314..5641373:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27959 8.7e+1 0.34 ± 0.22 STAR 163 112 0 51 yes dme-miR-210-5p_MIMAT0020816 dsi-miR-210_MIMAT0008849 blast uugugcgugugacagcggcuau agcugcuggccacugcacaaga agcugcuggccacugcacaagauuagacuuaagacucuugugcgugugacagcggcuau X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:18128233..18128292:+
4_dna:chromosome_chromosome:BDGP6:4:1:1348131:1_REF_25996 7.9e+1 0.34 ± 0.22 TRUE 165 121 0 44 no dme-miR-954-5p_MIMAT0005465 blast ucuggguguugcguugugugu uucacaugcaacaucccuuaca ucuggguguugcguuguguguaccuguguacaggcguauucacaugcaacaucccuuaca 4_dna:chromosome_chromosome:BDGP6:4:1:1348131:1_REF:626141..626201:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_31052 7.0e+1 0.34 ± 0.22 STAR 137 123 0 14 yes dme-miR-985-5p_MIMAT0020883 blast caaauguuccaauggucgggca cuggcucauugguacauuucau cuggcucauugguacauuucauaaguaccuuaucaaauguuccaauggucgggca X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:16191269..16191324:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_638 6.6e+1 0.34 ± 0.22 TRUE 126 111 0 15 yes dme-miR-100-5p_MIMAT0000357 dsi-miR-100_MIMAT0008872 blast aacccguaaauccgaacuugug caagaccggcauuaugggaguc aacccguaaauccgaacuugugcuguuuuauaucuguuacaagaccggcauuaugggaguc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18471444..18471505:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11464 6.5e+1 0.34 ± 0.22 STAR 124 112 0 12 yes dme-miR-991-5p_MIMAT0020890 dsi-miR-991-3p_MIMAT0012430 blast uuaaaguuguaguuuggaaagu uuucccaacuacaccuauuaaua uuucccaacuacaccuauuaauacauauuuuaacguccuauuaaaguuguaguuuggaaagu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20585213..20585275:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_31043 6.4e+1 0.34 ± 0.22 TRUE 118 108 0 10 yes dme-miR-927-5p_MIMAT0005501 dsi-miR-927-5p_MIMAT0012483 blast uuuagaauuccuacgcuuuacc caaagcguuuggauucugaaac uuuagaauuccuacgcuuuaccguggcauacgaaauucggcaaagcguuuggauucugaaac X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15965961..15966023:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2494 5.1e+1 0.34 ± 0.22 STAR 96 82 0 14 yes dme-miR-1006-5p_MIMAT0020903 dsi-miR-1006-3p_MIMAT0012444 blast uaaauucgauuucuuauucauag gugaguuugaaauugaaaugcguaa gugaguuugaaauugaaaugcguaaauuguuugguacaauuuaaauucgauuucuuauucauag 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16724794..16724858:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12725 4.8e+1 0.34 ± 0.22 STAR 88 82 1 5 yes dme-miR-193-5p_MIMAT0020849 dsi-miR-193-3p_MIMAT0012452 blast uacuggccuacuaagucccaac uugggauuuuuuagaucagcag uugggauuuuuuagaucagcaguuauugcuauauagccauauuuauaaaucuucuacuggccuacuaagucccaac 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:21574031..21574107:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_27999 4.4e+1 0.34 ± 0.22 STAR 94 92 0 2 yes dme-miR-972-5p_MIMAT0020869 blast uguacaauacgaauauuuaggc cuaaauauuuuuuuuguauaaa cuaaauauuuuuuuuguauaaauaacuuuuaacuuuuguacaauacgaauauuuaggc X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19551169..19551227:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12789 4.3e+1 0.34 ± 0.22 STAR 84 60 0 24 yes dme-miR-9388-5p_MIMAT0035238 blast uguaguacauacauacauaugu guauguauguauguacauaca guauguauguauguacauacauguguauaugguacauucauguaguacauacauacauaugu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:22945130..22945192:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_21723 3.5e+1 0.34 ± 0.22 STAR 61 53 0 8 yes dme-miR-929-5p_MIMAT0020892 dsi-miR-929-3p_MIMAT0012460 blast cucccuaacggagucagauuga aaauugacucuaguagggaguc aaauugacucuaguagggaguccuuuaaugagcgacucccuaacggagucagauuga 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:4295384..4295441:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11216 3.4e+1 0.34 ± 0.22 STAR 62 58 0 4 yes dme-miR-137-5p_MIMAT0020888 dsi-miR-137-3p_MIMAT0012494 blast uauugcuugagaauacacguag acguguaugcucguagcuauaac acguguaugcucguagcuauaaccugaaauccaaauguuauugcuugagaauacacguag 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:16065269..16065329:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25308 3.2e+1 0.34 ± 0.22 STAR 62 52 0 10 yes dme-miR-iab-8-5p_MIMAT0005463 blast ggauacauucaguauacguuua uuacguauacugaagguauaccg uuacguauacugaagguauaccggauaggauacacucaggauacauucaguauacguuua 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:16856277..16856337:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22267 2.2e+1 0.34 ± 0.22 STAR 36 33 0 3 yes dme-miR-2494-5p_MIMAT0012202 dsi-miR-2494-3p_MIMAT0012522 blast ucccaguaauguccacuuacaag guaagugcaccagauugggaa guaagugcaccagauugggaauaaccuucaaaagcugcaacuuaaauauucccaguaauguccacuuacaag 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:16618787..16618859:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11462 1.9e+1 0.34 ± 0.22 STAR 49 30 0 19 yes dme-miR-2498-5p_MIMAT0012210 blast aacuggcauucccgucuuacuu uaaaggcuguuaugcuuauuuuu uaaaggcuguuaugcuuauuuuuguguuuuuuacaaaacuggcauucccgucuuacuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20584734..20584792:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_8489 1.8e+1 0.34 ± 0.22 TRUE 37 31 0 6 yes dme-miR-2279-5p_MIMAT0011784 blast uuaaauaucugugugugaaauu uuucacgcgaagauauuuauuu uuaaauaucugugugugaaauuauuuaaaagauuaauuucacgcgaagauauuuauuu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:2552194..2552252:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28006 1.0e+1 0.34 ± 0.22 TRUE 31 19 0 12 no dme-miR-974-5p_MIMAT0005490 blast aagcgagcaaagaaguaguauuu uauaacuucauuggaagcuaag aagcgagcaaagaaguaguauuuguguuuccaagagcaaauauaacuucauuggaagcuaag X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19551701..19551763:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_145 9.5 0.33 ± 0.22 TRUE 22 20 0 2 no dme-miR-1005-3p_MIMAT0005018 dsi-miR-1005-3p_MIMAT0012468 blast ucuggaaucuuuaauucgcag gugaguugaucgauuucgagguu gugaguugaucgauuucgagguuuuggcacacgaauauaaucuggaaucuuuaauucgcag 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:4343695..4343756:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2156 7.8 0.36 ± 0.22 STAR 21 7 0 14 no dme-miR-966-5p_MIMAT0005481 blast ccgccaguugauaacccccagc uguggguugugggcuguguggc uguggguugugggcuguguggcugugguauaggugccgccaguugauaacccccagc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:6045641..6045698:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_31242 6.4 0.35 ± 0.22 STAR 20 19 0 1 no dme-miR-1007-5p_MIMAT0020904 blast uaagcucaauuaacuguuugcagc guaagcaguguuugaacucgau guaagcaguguuugaacucgaucuugguucuuggacucuugauaagcucaauuaacuguuugcagc X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:21296383..21296449:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25671 5.6 0.33 ± 0.21 TRUE 39 39 0 0 yes dme-miR-1001-5p_MIMAT0005521 dsi-miR-1001-5p_MIMAT0012506 blast uggguaaacucccaaggauca auccuuggguuucugcucucg uggguaaacucccaaggaucagguggagauugaaucccgauccuuggguuucugcucucg 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:27642480..27642540:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_291 5.4 0.33 ± 0.21 STAR 3126 2775 0 351 yes dme-miR-275-5p_MIMAT0020801 dsi-miR-275_MIMAT0008880 blast ucagguaccugaaguagcgcg cgcgcuaaucagugaccggggcu cgcgcuaaucagugaccggggcugguuuuuuauauacagucagguaccugaaguagcgcg 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425813..7425873:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22457 5.0 0.33 ± 0.21 STAR 926 596 0 330 yes dme-miR-1010-5p_MIMAT0020905 dsi-miR-1010-3p_MIMAT0012464 blast uuucaccuaucguuccauuugcagc guaagugguguagaugaaaca guaagugguguagaugaaacaaauuuaccaacaauuuuguuggauuguuucaccuaucguuccauuugcagc 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:22292878..22292950:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_206 4.6 0.31 ± 0.22 TRUE 496 395 0 101 yes dme-miR-960-5p_MIMAT0005474 dsi-miR-960_MIMAT0012495 blast ugaguauuccagauugcauagc uacggucugggacacuuuuaaca ugaguauuccagauugcauagcuuugugcuacuauugcuauacggucugggacacuuuuaaca 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5641080..5641143:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12592 4.6 0.31 ± 0.22 TRUE 141 139 0 2 yes dme-miR-219-5p_MIMAT0000335 dsi-miR-219_MIMAT0008868 blast ugauuguccaaacgcaauucu aggguugcgacugggcaucgcg ugauuguccaaacgcaauucuuguugauauucaauauucaaggguugcgacugggcaucgcg 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:17315023..17315085:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2406 4.0 0.31 ± 0.22 STAR 6 3 1 2 yes dme-miR-967-5p_MIMAT0005482 blast cuuuuccaccuaggugucucucu agagauaccucuggagaagcg agagauaccucuggagaagcgcgugaccugaccccagcaggagaacccaacccgcuuuuccaccuaggugucucucu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:12460013..12460090:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16826 0.9 0.22 ± 0.17 STAR 57 57 0 0 no dme-miR-957-5p_MIMAT0020851 dsi-miR-957_MIMAT0012498 blast ugaaaccguccaaaacugaggc cuuaguuuucgacguguuuuggu cuuaguuuucgacguguuuuggugugcuggggaguucuauuccgauugaaaccguccaaaacugaggc 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:22518209..22518277:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28009 0.9 0.22 ± 0.17 STAR 132 111 0 21 yes dme-miR-4966-5p_MIMAT0020190 blast uguucaacauauuuagcacuca uacuaaauauauugcacauguu uacuaaauauauugcacauguucaugcauguucaacauauuuagcacuca X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19558401..19558451:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28011 0.6 0.22 ± 0.17 STAR 132 111 0 21 yes dme-miR-4966-5p_MIMAT0020190 blast uguucaacauauuuagcacuca uacuaaauauauugcacauguu uacuaaauauauugcacauguucaugcauguucaacauauuuagcacuca X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19558630..19558680:+
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25814 0.4 0.22 ± 0.17 TRUE 58 58 0 0 no dme-miR-1013-3p_MIMAT0005026 dsi-miR-1013_MIMAT0012499 blast auaaaaguaugccgaacucgcag gugaguuucguacacuuaauua gugaguuucguacacuuaauuaauaggaucggccguuaauaaaaguaugccgaacucgcag 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:30791635..30791696:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_293 0.1 0.22 ± 0.17 TRUE 19250 19248 0 2 no dme-miR-305-5p_MIMAT0000391 dsi-miR-305_MIMAT0008860 blast auuguacuucaucaggugcucu agaaaucccauguguaucaacuguc agaaaucccauguguaucaacugucucccaugucuauuguacuucaucaggugcucu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425943..7426000:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28004 0.1 0.22 ± 0.17 TRUE 202 188 0 14 yes dme-miR-973-5p_MIMAT0005489 blast ugguuggugguugaacuucgauuuu ucuguucauucuccgacacaag ugguuggugguugaacuucgauuuuaaguauuuaaauaaaaugaaaucuguucauucuccgacacaag X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19551545..19551613:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_6739 -0.6 0.00 ± 0.00 STAR 8 7 0 1 yes dme-miR-307b-5p_MIMAT0012194 blast ucacacccagguugagugaguca ucacucaaggagguugugaugg ucacucaaggagguugugauggauaccauaucgaaauaacaucacacccagguugagugaguca 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9621264..9621328:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3521 -1.2 0.00 ± 0.00 TRUE 6 6 0 0 yes dme-miR-2490-5p_MIMAT0012197 blast ugaagcgauaaagcagguugca cucucucgcuuuauggcuugagc ugaagcgauaaagcagguugcaaacugcucucucgcuuuauggcuugagc 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:22989263..22989313:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7029 -1.3 0.00 ± 0.00 STAR 6 5 0 1 no dme-miR-4919-5p_MIMAT0020513 blast uaaucccugaacgacuugcag gugagucucuaggggauua gugagucucuaggggauuagcaagcuauaauuucucacuuaaucccugaacgacuugcag 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:15945886..15945946:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12184 -1.6 0.00 ± 0.00 TRUE 9 7 0 2 no dme-miR-2501-5p_MIMAT0012216 blast guaaguuuggagugccugggcua acucuugcaaucaaacuuucuuuca guaaguuuggagugccugggcuaagaacuuccauucugaaacuuaacucuugcaaucaaacuuucuuuca 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:8111106..8111176:+
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12046 -1.8 0.00 ± 0.00 TRUE 10 10 0 0 no dme-miR-955-5p_MIMAT0005466 dsi-miR-955-5p_MIMAT0012447 blast caucgugcagagguuugaguguc cauucaauuucugaacgguaga caucgugcagagguuugaguguccuguguuuugccuaaucgcauucaauuucugaacgguaga 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:3299071..3299134:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_31241 -2.7 0.00 ± 0.00 TRUE 19 19 0 0 no dme-miR-1007-3p_MIMAT0005020 blast uaagcucaauuaacuguuugcagc ugcuucagggauugcagcugcug uaagcucaauuaacuguuugcagcggacgggaucuucucggagaaucgacgacugcuucagggauugcagcugcug X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:21296331..21296407:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11126 -3.1 0.00 ± 0.00 TRUE 3033 3033 0 0 no dme-miR-989-3p_MIMAT0005506 dsi-miR-989_MIMAT0012497 blast ugugaugugacguaguggaac uucauuuugcgucuuuug uucauuuugcgucuuuugaauucgaauaguucaugugaugugacguaguggaac 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:14145365..14145419:-
3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_25872 -4.9 0.00 ± 0.00 STAR 16 12 0 4 no dme-miR-1014-5p_MIMAT0020907 blast uaaaauucauuuucauuugca guauaauggaaauagauuuuaa guauaauggaaauagauuuuaaucgcaggcgcgucagugguugaauuaaaauucauuuucauuugca 3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:31753524..31753591:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_489 -5.2 0.00 ± 0.00 STAR 3 3 0 0 no dme-miR-2489-5p_MIMAT0020910 dsi-miR-2489_MIMAT0012510 blast uauuguauguuguauuugcag gugaguauggcuauacaaauca gugaguauggcuauacaaaucaucuggaacguaaguucuaauguauguauuguauguuguauuugcag 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13609987..13610055:+
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30453 -5.7 0.00 ± 0.00 TRUE 9 9 0 0 no dme-miR-9372-5p_MIMAT0035207 blast uaaaagcacauuucgccagcacgu gucugugauuuugguuuuuaac uaaaagcacauuucgccagcacguguacuuuccaccucgucugugauuuugguuuuuaac X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:633691..633751:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11460 -6.5 0.00 ± 0.00 TRUE 6521 6521 0 0 no dme-miR-313-5p_MIMAT0020839 blast ugcugcggaugggggcaguacu uauuacccgacaucguucuagccaa uauuacccgacaucguucuagccaacaauuuucugcugcggaugggggcaguacu 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20584232..20584287:-
3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_16471 -7.4 0.00 ± 0.00 TRUE 205 205 0 0 no dme-miR-285-3p_MIMAT0000356 dsi-miR-285_MIMAT0008888 blast uagcaccauucgaaaucagugcu cgaacuucaaaugugcuguu uagcaccauucgaaaucagugcuuuugauaagaaacaaucagcgaagugucaaaucgaagcgaacuucaaaugugcuguu 3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11946048..11946128:-
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_8113 -1.0e+1 0.00 ± 0.00 TRUE 31 31 0 0 yes dme-miR-2279-5p_MIMAT0011784 blast uuaaauaucugugugugaaauu guucaaagacuaauaagauauauaaua uuaaauaucugugugugaaauuauuaggaaacagugaguucaaagacuaauaagauauauaaua 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:1422758..1422822:-
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2435 -2.0e+1 0.00 ± 0.00 TRUE 966 966 0 0 no dme-miR-968-3p_MIMAT0020865 blast accuuuugauguacuacuuuaa uaaguagugauaaugcaagaguauu accuuuugauguacuacuuuaagaaucuccaguuaaagucaacacauaaguagugauaaugcaagaguauu 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13747711..13747782:-
X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_28003 -2.1e+1 0.00 ± 0.00 TRUE 188 188 0 0 no dme-miR-973-5p_MIMAT0005489 blast ugguuggugguugaacuucgauuuu caucagaauauacuucacuuuaccguc caucagaauauacuucacuuuaccgucgucgacuuuucgugguuggugguugaacuucgauuuu X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:19551506..19551570:+
2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7068 -3.2e+1 0.00 ± 0.00 TRUE 23479 23479 0 0 no dme-miR-8-3p_MIMAT0000113 dsi-miR-8_MIMAT0008889 blast uaauacugucagguaaagauguc uguccuuaaccuucaguaccacc uaauacugucagguaaagaugucguccguguccuuaaccuucaguaccacc 2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:16831483..16831534:+
2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_551 -3.6e+1 0.00 ± 0.00 TRUE 10358 10358 0 0 no dme-miR-9b-5p_MIMAT0000395 dsi-miR-9a_MIMAT0008843 blast ucuuuggugauuuuagcuguau acaauuauucuuaaauuug acaauuauucuuaaauuuguuuaacuuauauguugcucuuuuguuugcauauuauuugcucuuuggugauuuuagcuguau 2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698698..16698779:+


mature miRBase miRNAs not detected by miRDeep2


miRBase precursor idClicking this field will display a pdf of the structure and read signature of the miRNA. total read countthis is the sum of read counts for the mature and star miRNAs. mature read count(s)this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown. star read countthis is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list remaining readsthis is the number of reads that did not map to any of the mature and star sequences UCSC browserif a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome. NCBI blastnclicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences). miRBase mature sequence(s)this is/are the mature miRNA sequence(s) input to quantifier.pl. miRBase star sequence(s)this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl. miRBase precursor sequencethis is the precursor miRNA sequence input to quantifier.pl.