Publications by Thierry Matthey

Journal articles

• Rf-induced persistent long-range ordered structures in two-species ion Coulomb crystals in a linear Paul trap (PDF) A. Mortensen, E. Nielsen, T. Matthey, and M. Drewsen, 2006.

• Quantum and classical calculations of ground state properties of parabolic quantum dots (PDF) V. Popsueva, T. Matthey J. P. Hansen L. Kocbach and M. Hjorth-Jensen, 2005.

• Observation of Three-dimensional Long-range Order in Small Ion Coulomb Crystals in an rf Trap (PDF) Mortensen A., Nielsen E., Matthey T. and Drewsen M., submitted, 2005.

• Parallel multigrid summation for the N-body problem (PS|PDF) (J. A. Izaguirre and T. Matthey), Vol. 65, pp. 949-962, 2005.

• MDSimAid: Automatic Parameter Optimization in Fast Electrostatic Algorithms (PDF) (M. S. Crocker, S. Hampton, T. Matthey, and J. A. Izaguirre), Journal of Computational Chemistry, Vol. 26, pp. 1021-1031, 2005.

• ProtoMol, an Object-Oriented Framework for Prototyping Novel Algorithms for Molecular Dynamics (PS|PDF) (T. Matthey, T. Cickovski, S. Hampton, A. Ko, Q. Ma, T. Slabach and J. A. Izaguirre), ACM Transactions on Mathematical Software, 2004.

• Coulomb bicrystals of species with identical charge-to-mass ratios (PS|PDF) (T. Matthey, J.P. Hansen, M. Drewsen), Phys. Rev Lett, 91 No. 16 165001, 2003.

• Dynamics of clustering in a binary Lennard-Jones material (PS|PDF) (I. Skauvik, J.P. Hansen, T. Matthey), Modelling and Simulation in Materials Science and Engineering, 8 No. 5 (September 2000) 665-676, 2000.

• Molecular dynamics simulations of sliding friction in a dense granular material (PS|PDF) (T. Matthey, J.P. Hansen), Modelling and Simulation in Materials Science and Engineering, 6 No. 6 (November 1998) 701-707, 1998.

Conferences

• A parallel split operator method for the time dependent Schrödinger equation (|) (J.P. Hansen, T. Matthey and T. Sørevik), 10^th EuroPVM/MPI Conference in Venice, 2003.

• Solving the 3d time dependent Schrödinger equation by a parallel split-step spectral method (|) (T. Sørevik and T. Matthey) Parallel Computing: Software Technology, Algorithms, Architectures, and Applications Proceedings of the 10^th ParCo Conference in Dresden, 2003.

• ProtoMol: A Molecular Dynamics Research Framework for Algorithmic Development (PS|PDF) (J.A. Izaguirre, T. Matthey and A. Ko), accepted in International Conference on Computational Science 2003.

• Overcoming instabilities in Verlet-I/r-RESPA with the mollified impulse method (PS|PDF) (J.A. Izaguirre, Q. Ma, T. Matthey, J. Willcock, T. Slabach, B. Moore, George Viamontes), Computational Methods for Macromolecules: Challenges and Applications, Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modeling, New York, Oct. 12-14, 2000. Lecture Notes in Computational Science and Engineering (LNCSE), Vol. 24, pp. 146-174. Springer Verlag, Berlin, 2002. Editors: T. Schlick and H. H. Gan

• ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization (PS|PDF) (T. Matthey, J.A. Izaguirre), Tenth SIAM Conference on Parallel Processing for Scientific Computing (PP01), 2000.

• Evaluation of MPI's One-Sided Communication Mechanism for Short-Range Molecular Dynamics on the Origin2000 (PS|PDF) (T. Matthey, J.P. Hansen), PARA2000 and Workshop on Applied Parallel Computing, Lecture Notes in Computer Science 1947, 2000.

• An object-oriented approach to model scenes of buildings (PS) (T. Matthey, H. Bieri), CGI'98 Conference Proceedings, 1998.

Theses

• Framework Design, Parallelization and Force Computation in Molecular Dynamics (PS|PDF) (T. Matthey), Ph.D. Thesis, Department of Informatics, University of Bergen, Norway. Sept. 2002.

• Objektorientierte Gebäudemodellierung (PDF) (T. Matthey), Master's thesis, University of Berne, Switzerland, 1997.

Internal Reports

• Computer Animation für BOOGA (PS) (T. Matthey), Projektarbeit, 1996.

• Petri-Netze (PS) (N. Buchs et al.,), lecture notes, 1994.

• Quaternionen und Vierquadratesatz (PS) (M. Steiner, T. Matthey), 1994.