Structure Motif Discovery and Mining the PDB

Web supplement to the paper
Structure Motif Discovery and Mining the PDB
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin and Willie Taylor
Bioinformatics 18, 362-367 (2002)
(An earlier version in proceedings of the German Conference on Bioinformatics 2000)

The SPratt2 program

Executable code is available for Sun Solaris and Linux (Pentium) Operating Systems. The program available free of charge to academic users. More information:

Discovered patterns - not using secondary structure information

Min supportCover - highest scoreCover - highest support
2xx
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Discovered patterns - using secondary structure information

Min supportCover - highest scoreCover - highest support
2xx
3xx
4xx
5xx
6xx
7xx
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11xx
12xx
13xx
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20xx