AbstractDataSource
AbstractEdgeType
AbstractFamilyGroup
AbstractInparalogous
AbstractSequenceData
AbstractStringNodeConverter
AbstractTreeParser
AttributeConverter
AttributeConverterAbstract
AttributeConverterAttributeClass
AttributeConverterBigDecimal
AttributeConverterBoolean
AttributeConverterDouble
AttributeConverterFloat
AttributeConverterInstance
AttributeConverterInstanceThis
AttributeConverterInteger
AttributeConverterList
AttributeConverterLong
AttributeConverterMethod
AttributeConverterNumber
AttributeConverterShort
AttributeConverterString
AttributeConverterStringList
AttributeConverterStringOption
AttributeConverterTag
AttributeConverterTagIdRef
CharsetFileWriter
ChildIterator
ChildSet
Compute
ComputeCompareGeneTrees
ComputeFamilyGroup
ComputeFamilyGroupPair
ComputeFamilyNumbers
ComputeMap
ComputeMapInfo
ComputeRoot
Container
DataSource
DataSourceIndexXmlNcbiTaxonomy
DataSourceXmlNcbiTaxonomy
Dependencies
DependenciesMapped
EdgeType
Family
FamilyGroup
FamilyGroupTreesInFiles
FamilyGroupTreesInFilesInfoPerRow
FatalException
FilePointerPart
GeneLeaf
GeneNode
InferMutation
Inparalogous
InparalogousStandard
InstanceConstructor
InstanceConstructorAbstract
InstanceConstructorInjector
InstanceConstructorInjectorSetup
InstanceConstructorReflection
InstanceHolder
InstanceHolderPrimitive
InstanceHolderSingleton
InstanceInjector
InstanceInjectorAbstract
InstanceInjectorAbstractIfNull
InstanceInjectorAttribute
InstanceInjectorAttributeAll
InstanceInjectorAttributeAllField
InstanceInjectorChildInstances
InstanceInjectorChildTemplates
InstanceInjectorDependency
InstanceInjectorGroup
InstanceInjectorMethodAbstract
InstanceInjectorMethodAttributes
InstanceInjectorMethodChildTagsAttributes
InstanceInjectorMethodInstances
InstanceInjectorParentInstance
InstanceInjectorTag
InstanceSetup
InstanceSetupAttribute
InstanceSetupMethod
LinkedTagInstance
MuNode
Mutation
Node
NotValidException
OocException
PreferredTree
PreferredTreeStandard
Print
PrintTree
PropertyFile
SequenceData
SequenceDataXml
SortedCollection
Source
SourceAbstract
SourceContext
SourceContextAbstract
SourceContextClassPath
SourceContextDirectory
SourceContextFile
SourceInputStream
SourceParseException
SourceTagHolder
SourceTagHolderJoocDescriptor
SpeciesLeaf
SpeciesNode
Split
StandardEdgeType
StringGeneNodeConverterDupSpe
StringGeneNodeConverterLabel
StringGeneNodeConverterNcbiNamesColumn
StringGeneNodeConverterSchreiberLabel
StringGeneNodeConverterSchreiberMapLabel
StringGeneNodeConverterSequenceDataXml
StringGeneNodeConverterStringTemplate
StringNodeConverter
StringNodeConverterMapInfo
StringNodeConverterStringTemplate
StringTemplate
Tag
TagAttribute
TagError
TagErrorHandler
TagErrorHandlerException
TagErrorMsg
TagIdException
TagParser
TagValidator
TagValidatorInstance
TagValidatorReflection
TagValidatorRestrictChildTag
TagValidatorRestrictChildTree
TagValidatorTag
Template
Tools
TreeParser
TreeParserDual
TreeParserNewick
TreeStructureParser
TreeStructureParserLeafList
TreeStructureParserSchreiber
TreeStructureParserSchreiberInfoIn
TreeTextBlock
Validate
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