Contents:
Novel links page
Local pages:
Societies:
Biological Databases:
-
Bibliographic:
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SeqAnalRef, sequence
analysis bibliography, Expasy.
-
BIOBOB,
Biocomputing biliography.
-
Software:
-
Multi-databases browsers:
-
Protein sequences:
-
Protein structures:
-
Nucleotide sequences:
-
Transcription factors:
-
Patterns/families:
-
Structure based classifications:
-
Tree classification
of PDB (by Alexandrov and Fischer using SARF2).
-
CATH Protein Structure
Classification
-
SCOP Structural Classification
of Proteins.
-
PDB chain
clustering produced by Fischer et al.
-
Misc.:
-
Lists of databases:
-
Longer
list
Online Visualisation Tools
Services (programs on-line):
-
Pratt - pattern discovery
online
- Expression Profiler - online tool for expression profile clustering and sequence pattern discovery
-
Database searches,
EBI (Fasta, Blitz,...).
-
Database
searches at DISC (Japan) -- includes Fasta, BLAST, MPsrch and SRS Fasta
-
Biologist's
Control Panel (Baylor college of medicine).
-
BCM
Search Launcher searches, alignments.
-
SAM, Sequence
alignment and modeling system (using HMMs).
-
Match sequence against
PROSITE.
-
AMAS
Analysis of multiple alignments (Geoff Barton).
-
MSA, Clustal W multiple sequence
alignment.
-
PredictProtein
, Heidelberg.
-
PSA, Protein Sequence Analysis:
fits a structure model to your sequence.
-
Sequence analysis tools,
PDB, including multiple
sequence alignment.
-
MEME, motif discovery
tool.
-
Block Maker,
at Fred Hutchinson Cancer Research Center.
-
Bioinformation
Search Center
-
Longer list
Tools information:
- J-Express, a tool for analysing
microarray gene expression data
-
Clustal W, multiple
sequence alignment
-
Phylip,
phylogenetic analysis.
-
Pratt, pattern discovery.
-
GCG, Wisconsin Sequence
Analysis Package Program Manual.
-
PROPHET, UNIX based software
package for data analysis.
-
RasMol, free
program which displays molecular structures.
-
MolScript, program for creating molecular graphics in the form of PostScript plot files.
-
PairWise and
SearchWise, Ewan Birney's excellent tools for sequence alignment and
search.
-
MEME, Multiple EM for Motif Elicitation
Bioinformatics sites:
-
EMBnet node in Oslo.
-
EBI, the EMBL Outstation Hinxton.
-
EMBL, Heidelberg.
-
EMBnet, the
European network for molecular biology.
-
BIOSCI, Bionet electronic newsgroups.
-
CBS, Center for Biological Sequence
Analysis, Technical University of Denmark.
-
Expasy, Geneve.
-
BIBISERV, Bielefeld
University Bioinforrmatics Server.
- Nee-How, The Bioresource
Finder
-
BSM, Biomolecular Structure
and Modelling at UCL.
-
Human
Genome Project Information
-
Sanger centre, Hinxton, England.
-
SEQNET, Daresbury, England.
-
The Johns Hopkins University
BioInformatics Web Server.
-
W. M. Keck Center
for advanced training in computational biology.
-
B3E, Bioinformatics
in France.
-
UK MRC HGMPRC UK Human Genome
Mapping Project Resource Centre.
-
NCBI National Center for Biotechnology
Information (USA).
-
NLM National Library of Medicine
(USA).
-
CGATBSS, Canadian Genome Analysis
& Technology (CGAT) Bioinformatics Support Services.
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DDBJ DNA data bank, Japan.
-
GDB Genome Data Base.
-
ANGIS Australian National Genomic
Information Service.
-
ANU Bioinformatics Hypermedia Service.
-
HUM-MOLGEN Human Molecular Genetics.
-
BioMOO The Virtual
Meeting Place for Biologists
-
BioBox, Finland.
-
Information theory and molecular
biology, Tom Schneider's group.
-
ISREC (Swiss Institute for
Experimental Cancer Research), Bioinformatics Group.
- DoubleTwist
-
WWW in Biology,
bionet.software.www.
-
UCSC Computational
Biology.
-
Bioinformatics
and Computational Biology at George Mason University.
-
Computational Biology USC, University
of Southern California.
-
HUJI, Hebrew University of
Jerusalem Hadassah Medical School: The Genomic and BioInformatics Server.
-
Centre of Bioinformatics, Peking.
-
Bioexchange.com
Meetings:
Introductory papers/courses:
University Courses in computational biology:
-
Bioinformatics course in Bergen.
- International Master's programmein Bioinformatics at Chalmers University of Technology, Gothenburg, Sweden.
-
Computational Molecular Biology
at Washington University.
-
Keck Center, Pittsburgh,
Pennsylvania.
-
Medical informatics, Pittsburgh,
Pennsylvania.
-
The Penn Computational
Biology Training Program.
-
Medical Information
Sciences 214 - Representations and Algorithms for Computational Molecular
Biology, Stanford.
-
Algorithms for Molecular
Biology - Course Homepage , Israel.
-
PSB Biocomputing
Education workshop
-
Computational Biology
Course, Hopkins
-
Bioinformatics
courses at George Mason University.
-
Biocomputing
Course Resource List
-
VSNS
Multiple Alignment Resource Page
-
How to become a bioinformatics expert, list of European courses.
- University Bioinformatics Programs - list provided by IHCP
Advanced papers/courses/lecture transcripts:
Journals on the Web:
Other related sites:
Other collections of links:
- Microarray Informatics Resource Page,
a collection of literature and web links.
- Biolinks from Bioplanet
-
Biotechnology Software,
maintained by The National Biotechnology
Information Facility
-
BRASS,
Bioinformatics Resource for Algorithms, Software and Sequences.
-
Showcase for new WWW servers.
-
Bio-wURLd.
-
List at SEQNET
-
The World-Wide Web Virtual
Library: Biosciences, Harvard.
-
Survey of
Molecular Biology Databases and Servers, R. Smith.
-
Biologists's Control
Panel includes searches of many databases.
-
Pedro's
BioMolecular Research Tool.
-
Amos' WWW links.
-
Pasteur
Institute.
- Nee-How, The Bioresource
Finder
-
Web Resources
for Protein Scientists, Protein
Science.
-
Motif Bioinformatics Server, Stanford.
-
Search engine biological Web Sites.
-
Jeff's biolinks,
Yale University.
List compiled by: Inge Jonassen.