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java.lang.Objectooc.LinkedTagInstance
softparsmap.Compute
softparsmap.ComputeFamilyGroup
softparsmap.ComputeMap
This task will map species from the species tree to the the nodes of the gene tree for all families in a given family group. The result will be written to one file per family.
Constructor Summary | |
ComputeMap()
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Method Summary | |
void |
computeFamily(Family family,
boolean verbose)
Compute a family. |
Methods inherited from class softparsmap.ComputeFamilyGroup |
afterCompute, beforeCompute, computeTask |
Methods inherited from class softparsmap.Compute |
getArg, getArgs, getInparalogous, getPrintFamilyInfo, getPropertyFile, getTargetFile, getTreeParser, initiateDataSource, main, numberArgs, setArgs, useProgressIndicator |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
public ComputeMap()
Method Detail |
public void computeFamily(Family family, boolean verbose) throws java.lang.Throwable
ComputeFamilyGroup
computeFamily
in class ComputeFamilyGroup
family
- is the family that will be computedverbose
- is true if extra information is printed
java.lang.Throwable
- because exceptions are logged for every family
but the task will continue on the rest of the family group.
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