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java.lang.Objectsoftparsmap.DataSourceIndexXmlNcbiTaxonomy
Index for data source DataSourceXmlNcbiTaxonomy
.
Field Summary | |
java.util.Map |
childToParent
This map contain the tree and is created from the file nodes.dmp. |
java.util.Map |
databaseIdToFilePointerPart
A map from the database id numbers (Integer) to a position (FilePointerPart) in the database that holds the sequence part. |
java.util.Map |
databaseIdToNodesId
A map from the database id number (Integer) to the tax id number in NCBI (Integer). |
java.util.Map |
nodesIdToNamesFilePointer
A map from NCBI's tax id's (Integer) to file pointer into the file names.dmp such that when reading one line from that position will get the name row for that species. |
Constructor Summary | |
DataSourceIndexXmlNcbiTaxonomy()
Constructor creates empty maps. |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
public java.util.Map childToParent
public java.util.Map nodesIdToNamesFilePointer
public java.util.Map databaseIdToNodesId
public java.util.Map databaseIdToFilePointerPart
Constructor Detail |
public DataSourceIndexXmlNcbiTaxonomy()
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