ProtoMol 1.8.3: BPTI 14281 Atoms, 100 Steps
Machine
Compiler
Vacuum
PBC
Cell Size
10
5
3 1/3
10
5
3 1/3
Dual AMD Opteron 248 2.2GHz
le04
Intel 8.0
57.60680
46.53375
46.78541
104.51191
75.19006
84.90123
Dual AMD Opteron 248 2.2GHz
le04
gcc 3.2.2
42.23086
34.98725
36.11871
78.57884
61.00530
69.73622
Pentium(R) 4 2.53GHz
romhegg
Intel 8.0
82.61629
64.27086
63.91178
131.30994
93.24453
103.00660
Pentium(R) 4 2.53GHz
romhegg
gcc 3.2.2
113.09930
94.08331
86.44412
182.61486
134.46937
146.36450
P4+ v2.2 1.6GHz (*)
blade
xlC 6






P4+ v2.2 1.6GHz
blade
gcc 3.2.3
114.22825
98.49399
98.75213
172.38679
135.47089
145.30590
P4 1.3Ghz
tre
xlC 6
124.77146
104.73123
108.48935
199.67187
153.70434
170.16276
Dual AMD Opteron 2.0Ghz (*)
c0-0
pathCC 1.2






Dual AMD Opteron 2.0Ghz
c0-0
gcc 3.2.3
50.73854
42.55911
43.81200
96.66381
73.69411
82.10057
MIPS R14000 1.4
gridur
MIPSpro 7.4
126.04032
106.59266
118.52494
198.53973
163.74625
196.26711









(*) Internal compiler error

NAMD 2.5: APOA1 92224 Atoms, 100 Steps
Machine
Compiler
1 exe
2 exe
CPU
Wall
CPU
Wall
P4+ v2.2 1.6GHz
blade
gcc 3.2.3
502.69
502.98
504.58 / 504.95
505.10 / 506.68
Dual AMD Opteron 2.0Ghz
c0-0
bin
427.94
429.17
436.63 / 424.56
437.71 / 425.66
P4 1.3Ghz
tre
bin
637.07
637.07