Examples of DP based methods
Alternating superposition and alignment
- Rao & Rossmann (1973), Rossmann & Argos (1975, 1976), …
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Double dynamic programming
- Taylor & Orengo (1989), Taylor (1997)
- Need not fix one alignment, but makes high-level scoring matrix based on quality of fit for a set of superpositionings (low-level matrices)