Some pattern driven algorithms:

• Smith et al., 1990

• Neuwald and Green, 1994

• Wang et al., 1994

• Jonassen et al., 1995; Jonassen 1997

• Sagot et al., 1995

• Rigoutsos and Floratos, 1998

• Vilo, 1998

• van Helden et al., 1998

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