Neighbour String *-Patterns

• String patterns consist of

  • single amino acids
  • match sets
  • * which matches an arbitrary number of consecutive amino acids

• Example:

  • S*[DN]*H*F*C

• Different from SPratt that uses Prosite style patterns, e.g.

  • S-x(2,3)-[DN]-x(3,5)-H-x-F-x(8,10)-C

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