The server is not completely stable - please send an email to inge@ii.uib.no if there are any problems.
All queries are limited to five minutes of running time on the server - you will be warned when Pratt had to pull out early of the search to keep within this limit. Note that you need to input at least 3 sequences.
Format of the input file or input data: Fasta Swissprot Pratt output file
Use the input file from the server:
Type or paste your input data in here (remember to input two or more sequences and to use sequence names in Fasta format!!):
PATTERN CONSERVATION: C%: min Percentage Seqs to Match PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length PN: max Nr of Pattern Symbols PX: max Nr of consecutive x's FN: max Nr of flexible spacers FL: max Flexibility FP: max Flex.Product BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness R: Pattern Refinement onoff RG: Generalise ambiguous symbols onoff OUTPUT: OP: PROSITE Pattern Format onoff ON: max number patterns OA: max number Alignments M: Print Patterns in sequences onoff MR: ratio for printing MV: print vertically onoff