The server is not completely stable - please send an email to inge@ii.uib.no if there are any problems.

All queries are limited to five minutes of running time on the server - you will be warned when Pratt had to pull out early of the search to keep within this limit. Note that you need to input at least 3 sequences.

Format of the input file or input data: Fasta Swissprot Pratt output file

Use the input file from the server:

Type or paste your input data in here (remember to input two or more sequences and to use sequence names in Fasta format!!):

Set the parameters

PATTERN CONSERVATION:

 C%: min Percentage Seqs to Match         

PATTERN RESTRICTIONS :
 PP: pos in seq [off,complete,start]     off
 PL: max Pattern Length                   
 PN: max Nr of Pattern Symbols            
 PX: max Nr of consecutive x's            
 FN: max Nr of flexible spacers           
 FL: max Flexibility                      
 FP: max Flex.Product                     
 BI: Input Pattern Symbol File           off
 BN: Nr of Pattern Symbols Initial Search 

PATTERN SCORING:
 S: Scoring [info,mdl,tree,dist,ppv]     info

SEARCH PARAMETERS:
 G: Pattern Graph from [seq,al,query]    seq
 E: Search Greediness                     
 R: Pattern Refinement                   onoff
 RG: Generalise ambiguous symbols        onoff

OUTPUT: 
 OP: PROSITE Pattern Format              onoff
 ON: max number patterns                  
 OA: max number Alignments                
 M: Print Patterns in sequences          onoff
 MR: ratio for printing                   
 MV: print vertically                    onoff