PrattWWW - full version
Sequence Input
Format :
Fasta
Swissprot
PrattOutput
Sequence input file :
Load the sequence from the file located in the directory "/tmp" on the server:
Type or paste your sequence data in here:
General Parameter
Min. percentage sequences matching (-%) :
100
95
90
80
70
60
50
Minimum information content (-I) :
10
20
Refinement:
on
off
All queries are limited to one minute of running time on the server - you will be warned when Pratt had to pull out early of the search to keep within this limit.
The remaining parameters are not used yet:
PATTERN GRAPH
"Graph from an Alignment" (-G):
on
off
"Graph from a Query sequence" (-J):
on
off
PATTERNS, INITIAL SEARCH
"Number of possible pattern symbols" (-B):
20
"max length" (-L):
50
"max number of pattern symbols" (-C):
50
"max wildcard length" (-W):
5
"max number of flexible gaps" (-N):
2
"max Flexibility" (-F):
2
"max flexible product" (-P):
10
INITIAL SEARCH
"Greediness parameter" (-E):
3
"Pull-out parameter" (-U):
5
OUTPUT
"PROSITE pattern format" (-V):
on
off
"max number patterns" (-H):
20
"max number Alignments" (-A):
50
"Print motifs in Sequences" (-S):
on
off
"ratio for printing" (-K):
10
"Evaluate discrimatory power" (-Y):
on
off
DIVERSITY OPTIONS
"Input tree" (-T):
on
off
"Input dist" (-D):
on
off
"Restrictions on pattern matches" (-6):
on
off