------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file YHDG PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename /Home/brisk/inge/public_html/papers/pratt/fams/YHDG OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NIR3_AZOBR 328 NIR3_RHILP 317 NIR3_RHOCA 324 YACF_BACSU 333 YHDG_ECOLI 321 YHDG_HAEIN 330 YHDG_SALTY 321 YJBN_ECOLI 345 YJBN_HAEIN 327 YOHI_ECOLI 315 YOHI_HAEIN 310 YQI2_CAEEL 290 Pratt run started at Mon Feb 10 17:37:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 12( 12) N-x-G-C-P 2: 12.5102 14( 12) G-R-x-A 3: 12.5102 13( 12) L-A-x(3)-G 4: 12.5102 12( 12) K-x-R-x(3)-D 5: 12.5102 12( 12) V-x(2)-K-x-R 6: 12.5102 12( 12) G-C-P 7: 12.0102 15( 12) V-x(5)-G-x(1,2)-L 8: 12.0102 18( 12) L-x(3,4)-G-x-D 9: 12.0102 20( 12) A-x(2)-V-x(4,5)-A 10: 12.0102 13( 12) G-x(2,3)-L-x(3)-E 11: 12.0102 15( 12) V-x(2)-K-x(2,3)-G 12: 12.0102 13( 12) V-x(5)-G-x(0,1)-A 13: 12.0102 13( 12) V-x(1,2)-K-x(3)-G 14: 12.0102 14( 12) V-x(5)-G-x(2,3)-L 15: 11.5102 17( 12) V-x(1,3)-L-x-G 16: 11.5102 22( 12) V-x(2,3)-A-x(3,4)-V 17: 11.5102 30( 12) V-x(1,2)-A-x(3,4)-V 18: 11.5102 24( 12) A-x(2,3)-A-x(2,3)-E 19: 11.5102 14( 12) A-x(0,1)-E-x(1,2)-G 20: 11.5102 21( 12) A-x(3,4)-E-x(1,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.3786 12( 12) V-[ST]-[LV]-K-x-R-x-[GN]-x-[AD] B 2: 24.6436 12( 12) A-x(0,1)-E-x(1,2)-G-x(3)-[ILV]-[ADNTV]-[ILV]-x-[CGV]-x-[CT] C 3: 19.9051 12( 12) N-x-G-C-P-x(3)-[IV] D 4: 18.4656 12( 12) V-x(1,2)-K-x-[RS]-x-G-x-[AD] E 5: 17.6078 12( 12) L-A-[EP]-x(2)-G-x(2)-[ADEGN] F 6: 16.9742 16( 12) A-x(3,4)-E-x(1,2)-G-x(3)-[IV]-x-[AILV] G 7: 15.7350 12( 12) G-C-P-x(3)-[IV] H 8: 15.2463 15( 12) V-x(2)-K-x(2,3)-G-x-[AD] I 9: 15.1639 12( 12) K-x-R-x-[GNV]-x-D J 10: 14.2126 12( 12) L-x(3,4)-G-x-D-[AGLP] K 11: 12.5102 14( 12) G-R-x-A L 12: 12.0102 15( 12) V-x(5)-G-x(1,2)-L M 13: 12.0102 20( 12) A-x(2)-V-x(4,5)-A N 14: 12.0102 13( 12) G-x(2,3)-L-x(3)-E O 15: 12.0102 13( 12) V-x(5)-G-x(0,1)-A P 16: 12.0102 14( 12) V-x(5)-G-x(2,3)-L Q 17: 11.5102 17( 12) V-x(1,3)-L-x-G R 18: 11.5102 22( 12) V-x(2,3)-A-x(3,4)-V S 19: 11.5102 30( 12) V-x(1,2)-A-x(3,4)-V T 20: 11.5102 24( 12) A-x(2,3)-A-x(2,3)-E Best patterns with alignments: fitness hits(seqs) Pattern A 1: 25.3786 12( 12) V-[ST]-[LV]-K-x-R-x-[GN]-x-[AD] Occurrences: 12(12) NIR3_AZOBR : 138- 147: avtip VTLKmRkGwD dssln NIR3_RHILP : 130- 139: avdip VTLKmRlGwD ensin NIR3_RHOCA : 139- 148: avdlp VTLKmRlGwD edqln YACF_BACSU : 138- 147: avnkp VTVKmRmGwD edhif YHDG_ECOLI : 136- 145: avdvp VTLKiRtGwA pehrn YHDG_HAEIN : 136- 145: avnvp VTLKiRtGwD ksnrn YHDG_SALTY : 136- 145: avdvp VTLKiRtGwA pehrn YJBN_ECOLI : 150- 159: vvsip VTVKtRiGiD dqdsy YJBN_HAEIN : 135- 144: avkip VTVKtRiGiD eldsy YOHI_ECOLI : 136- 145: pahlp VSVKvRlGwD sgekk YOHI_HAEIN : 136- 145: psefp VSVKvRlGwD disqa YQI2_CAEEL : 128- 137: dpdfs VSLKiRiNhD iektv B 2: 24.6436 12( 12) A-x(0,1)-E-x(1,2)-G-x(3)-[ILV]-[ADNTV]-[ILV]-x-[CGV]-x-[CT] Occurrences: 12(12) NIR3_AZOBR : 160- 174: rlari AeEc-GiklVTVhGrT reqfy NIR3_AZOBR : 160- 174: rlari A-EecGiklVTVhGrT reqfy NIR3_RHILP : 152- 166: diarr A-EasGiqlVTIhGrT rmqfy NIR3_RHOCA : 161- 175: eiaar A-EaaGvkmIVIhGrT rmqfy YACF_BACSU : 159- 174: vknaq AvEraGgkaVALhGrT rvqmy YHDG_ECOLI : 158- 172: eiaql A-EdcGiqaLTIhGrT raclf YHDG_HAEIN : 158- 172: qigki A-EqcGiqaLTVhGrT raclf YHDG_SALTY : 158- 172: eiaql A-EdcGiqaLTIhGrT raclf YJBN_ECOLI : 100- 114: qcakl A-EarGydeINLnVgC psdrv YJBN_HAEIN : 85- 99: ycakl AeEr-GyheINLnVgC psdrv YJBN_HAEIN : 85- 99: ycakl A-EerGyheINLnVgC psdrv YOHI_ECOLI : 84- 98: enaar AvEl-GswgVDLnCgC psktv YOHI_HAEIN : 156- 171: feiad AvEqgGateITVhGrT kadgy YQI2_CAEEL : 148- 162: dlcrk A-EaaGvthLTVhGrT psqra C 3: 19.9051 12( 12) N-x-G-C-P-x(3)-[IV] Occurrences: 12(12) NIR3_AZOBR : 99- 107: aiidi NfGCPvkkV vngha NIR3_RHILP : 91- 99: diidi NmGCPakkV iggys NIR3_RHOCA : 100- 108: eiidi NmGCPakkV tggls YACF_BACSU : 99- 107: diidi NmGCPvpkI tkcda YHDG_ECOLI : 97- 105: qiidi NmGCPakkV nrkla YHDG_HAEIN : 97- 105: qiidi NmGCPakkV nrkla YHDG_SALTY : 97- 105: qiidi NmGCPakkV nrkla YJBN_ECOLI : 111- 119: deinl NvGCPsdrV qngmf YJBN_HAEIN : 96- 104: heinl NvGCPsdrV qngmf YOHI_ECOLI : 95- 103: wgvdl NcGCPsktV ngsgg YOHI_HAEIN : 95- 103: hgidl NcGCPsktV ngsng YQI2_CAEEL : 86- 94: tgvdl NcGCPkhdV rskgf D 4: 18.4656 12( 12) V-x(1,2)-K-x-[RS]-x-G-x-[AD] Occurrences: 12(12) NIR3_AZOBR : 138- 147: avtip VtlKmRkGwD dssln NIR3_RHILP : 130- 139: avdip VtlKmRlGwD ensin NIR3_RHOCA : 139- 148: avdlp VtlKmRlGwD edqln YACF_BACSU : 138- 147: avnkp VtvKmRmGwD edhif YHDG_ECOLI : 136- 145: avdvp VtlKiRtGwA pehrn YHDG_HAEIN : 136- 145: avnvp VtlKiRtGwD ksnrn YHDG_SALTY : 136- 145: avdvp VtlKiRtGwA pehrn YJBN_ECOLI : 150- 159: vvsip VtvKtRiGiD dqdsy YJBN_HAEIN : 135- 144: avkip VtvKtRiGiD eldsy YOHI_ECOLI : 136- 145: pahlp VsvKvRlGwD sgekk YOHI_HAEIN : 136- 145: psefp VsvKvRlGwD disqa YQI2_CAEEL : 76- 84: eaaem Vy-KcStGvD lncgc E 5: 17.6078 12( 12) L-A-[EP]-x(2)-G-x(2)-[ADEGN] Occurrences: 12(12) NIR3_AZOBR : 16- 24: egpvi LAPmsGvtD lpfrr NIR3_RHILP : 9- 17: rnrvv LAPmsGvtD mpfre NIR3_RHOCA : 16- 24: dppvl LAPmaGitD lpfrr YACF_BACSU : 15- 23: knrvv LAPmaGvcN safrl YHDG_ECOLI : 157- 165: eeiaq LAEdcGiqA ltihg YHDG_HAEIN : 14- 22: rnrvl LAPmaGitD qpfrr YHDG_SALTY : 157- 165: veiaq LAEdcGiqA ltihg YJBN_ECOLI : 99- 107: aqcak LAEarGydE inlnv YJBN_HAEIN : 84- 92: kycak LAEerGyhE inlnv YOHI_ECOLI : 5- 13: mrvl LAPmeGvlD slvre YOHI_HAEIN : 5- 13: mrvi LAPmqGvlD pfvre YQI2_CAEEL : 201- 209: eealf LAEqtGvdG imaan F 6: 16.9742 16( 12) A-x(3,4)-E-x(1,2)-G-x(3)-[IV]-x-[AILV] Occurrences: 16(12) NIR3_AZOBR : 84- 98: dvmae AaklnEdrGaaiIdI nfgcp NIR3_AZOBR : 85- 98: vmaea Akln-EdrGaaiIdI nfgcp NIR3_AZOBR : 157- 170: naprl AriaeEc-GiklVtV hgrtr NIR3_AZOBR : 157- 170: naprl Aria-EecGiklVtV hgrtr NIR3_RHILP : 149- 162: napdi Arra-EasGiqlVtI hgrtr NIR3_RHOCA : 158- 171: naaei Aara-EaaGvkmIvI hgrtr YACF_BACSU : 157- 170: favkn Aqav-EraGgkaVaL hgrtr YHDG_ECOLI : 83- 96: emada ArinvEs-GaqiIdI nmgcp YHDG_HAEIN : 83- 96: emaqa AainvEy-GaqiIdI nmgcp YHDG_HAEIN : 84- 96: maqaa Ainv-Ey-GaqiIdI nmgcp YHDG_SALTY : 83- 96: emada ArinvEs-GaqiIdI nmgcp YJBN_ECOLI : 97- 110: alaqc Akla-EarGydeInL nvgcp YJBN_HAEIN : 82- 95: qlkyc AklaeEr-GyheInL nvgcp YJBN_HAEIN : 82- 95: qlkyc Akla-EerGyheInL nvgcp YOHI_ECOLI : 81- 94: wlaen AaravEl-GswgVdL ncgcp YOHI_ECOLI : 82- 94: laena Arav-El-GswgVdL ncgcp YOHI_HAEIN : 154- 167: qafei Adav-EqgGateItV hgrtk YQI2_CAEEL : 198- 212: ttree AlflaEqtGvdgImA angll G 7: 15.7350 12( 12) G-C-P-x(3)-[IV] Occurrences: 12(12) NIR3_AZOBR : 101- 107: idinf GCPvkkV vngha NIR3_RHILP : 93- 99: idinm GCPakkV iggys NIR3_RHOCA : 102- 108: idinm GCPakkV tggls YACF_BACSU : 101- 107: idinm GCPvpkI tkcda YHDG_ECOLI : 99- 105: idinm GCPakkV nrkla YHDG_HAEIN : 99- 105: idinm GCPakkV nrkla YHDG_SALTY : 99- 105: idinm GCPakkV nrkla YJBN_ECOLI : 113- 119: inlnv GCPsdrV qngmf YJBN_HAEIN : 98- 104: inlnv GCPsdrV qngmf YOHI_ECOLI : 97- 103: vdlnc GCPsktV ngsgg YOHI_HAEIN : 97- 103: idlnc GCPsktV ngsng YQI2_CAEEL : 88- 94: vdlnc GCPkhdV rskgf H 8: 15.2463 15( 12) V-x(2)-K-x(2,3)-G-x-[AD] Occurrences: 15(12) NIR3_AZOBR : 138- 147: avtip VtlKmrkGwD dssln NIR3_RHILP : 130- 139: avdip VtlKmrlGwD ensin NIR3_RHOCA : 139- 148: avdlp VtlKmrlGwD edqln YACF_BACSU : 138- 147: avnkp VtvKmrmGwD edhif YHDG_ECOLI : 105- 113: cpakk VnrKla-GsA llqyp YHDG_ECOLI : 136- 145: avdvp VtlKirtGwA pehrn YHDG_HAEIN : 105- 113: cpakk VnrKla-GsA llqfp YHDG_HAEIN : 136- 145: avnvp VtlKirtGwD ksnrn YHDG_SALTY : 105- 113: cpakk VnrKla-GsA llqyp YHDG_SALTY : 136- 145: avdvp VtlKirtGwA pehrn YJBN_ECOLI : 150- 159: vvsip VtvKtriGiD dqdsy YJBN_HAEIN : 135- 144: avkip VtvKtriGiD eldsy YOHI_ECOLI : 136- 145: pahlp VsvKvrlGwD sgekk YOHI_HAEIN : 136- 145: psefp VsvKvrlGwD disqa YQI2_CAEEL : 94- 102: cpkhd VrsKgf-GsA llskp I 9: 15.1639 12( 12) K-x-R-x-[GNV]-x-D Occurrences: 12(12) NIR3_AZOBR : 141- 147: ipvtl KmRkGwD dssln NIR3_RHILP : 133- 139: ipvtl KmRlGwD ensin NIR3_RHOCA : 142- 148: lpvtl KmRlGwD edqln YACF_BACSU : 141- 147: kpvtv KmRmGwD edhif YHDG_ECOLI : 208- 214: itdpl KaRaVlD ytgad YHDG_HAEIN : 139- 145: vpvtl KiRtGwD ksnrn YHDG_SALTY : 208- 214: itnph KaRaVlD ytgad YJBN_ECOLI : 153- 159: ipvtv KtRiGiD dqdsy YJBN_HAEIN : 138- 144: ipvtv KtRiGiD eldsy YOHI_ECOLI : 139- 145: lpvsv KvRlGwD sgekk YOHI_HAEIN : 139- 145: fpvsv KvRlGwD disqa YQI2_CAEEL : 131- 137: fsvsl KiRiNhD iektv J 10: 14.2126 12( 12) L-x(3,4)-G-x-D-[AGLP] Occurrences: 12(12) NIR3_AZOBR : 215- 222: avdra Laes-GaDG vmigr NIR3_RHILP : 207- 214: daqei Lrrs-GaDA vmigr NIR3_RHOCA : 270- 277: hyeai Lsfy-GrDL glria YACF_BACSU : 215- 222: dakrm Ldet-GvDG vmigr YHDG_ECOLI : 213- 220: karav Ldyt-GaDA lmigr YHDG_HAEIN : 213- 220: kakfv Lnyt-GaDA imigr YHDG_SALTY : 213- 220: karav Ldyt-GaDA lmigr YJBN_ECOLI : 83- 90: ehpva Lqlg-GsDP aalaq YJBN_HAEIN : 68- 75: enpva Lqlg-GsDP eqlky YOHI_ECOLI : 87- 94: arave Lgsw-GvDL ncgcp YOHI_HAEIN : 87- 94: iraid Lgsh-GiDL ncgcp YQI2_CAEEL : 201- 209: eealf LaeqtGvDG imaan K 11: 12.5102 14( 12) G-R-x-A Occurrences: 14(12) NIR3_AZOBR : 226- 229: dgvmi GRgA ygrpw NIR3_RHILP : 67- 70: mvqla GReA hwmae NIR3_RHILP : 313- 316: agald GReA a NIR3_RHOCA : 76- 79: svqla GReA apmae NIR3_RHOCA : 227- 230: agvmv GRgA qgapw YACF_BACSU : 226- 229: dgvmi GRaA lgnpw YHDG_ECOLI : 224- 227: dalmi GRaA qgrpw YHDG_HAEIN : 224- 227: daimi GRaA lgnpw YHDG_SALTY : 224- 227: dalmi GRaA qgrpw YJBN_ECOLI : 248- 251: dgvmv GReA yqnpg YJBN_HAEIN : 232- 235: dgvmv GReA yqnps YOHI_ECOLI : 224- 227: davmi GRgA lnipn YOHI_HAEIN : 224- 227: qdlmv GRgA lnipn YQI2_CAEEL : 276- 279: fneln GRlA idhfl L 12: 12.0102 15( 12) V-x(5)-G-x(1,2)-L Occurrences: 15(12) NIR3_AZOBR : 107- 116: cpvkk VvnghaGssL mrdea NIR3_RHILP : 99- 108: cpakk ViggysGsaL mrdpd NIR3_RHOCA : 108- 117: cpakk VtgglsGaaL mrnpd YACF_BACSU : 240- 248: miyrt VqyletGk-L keepq YHDG_ECOLI : 105- 114: cpakk VnrklaGsaL lqypd YHDG_HAEIN : 105- 114: cpakk VnrklaGsaL lqfpd YHDG_SALTY : 105- 114: cpakk VnrklaGsaL lqypd YJBN_ECOLI : 119- 128: cpsdr VqngmfGacL mgnax YJBN_HAEIN : 104- 113: cpsdr VqngmfGacL makad YOHI_ECOLI : 85- 94: naara VelgswGvdL ncgcp YOHI_ECOLI : 103- 112: cpskt VngsggGatL lkdpe YOHI_HAEIN : 103- 112: cpskt VngsngGaaL lkqpe YQI2_CAEEL : 76- 85: eaaem VykcstGvdL ncgcp YQI2_CAEEL : 94- 103: cpkhd VrskgfGsaL lskpe YQI2_CAEEL : 270- 278: aqqrr VfnelnGr-L aidhf M 13: 12.0102 20( 12) A-x(2)-V-x(4,5)-A Occurrences: 20(12) NIR3_AZOBR : 220- 229: laesg AdgVmigrgA ygrpw NIR3_RHILP : 29- 38: awrfg AglVvtemvA srelv NIR3_RHOCA : 36- 45: varfg AglVvsemvA sgeml NIR3_RHOCA : 86- 94: pmaea AkiVadmg-A eiidi NIR3_RHOCA : 221- 230: ldqsg AagVmvgrgA qgapw YACF_BACSU : 84- 93: tlvea AkfVdqnttA diidi YHDG_ECOLI : 102- 110: nmgcp AkkVnrkl-A gsall YHDG_ECOLI : 209- 218: tdplk AraVldytgA dalmi YHDG_HAEIN : 102- 110: nmgcp AkkVnrkl-A gsall YHDG_HAEIN : 165- 174: qcgiq AltVhgrtrA clfeg YHDG_HAEIN : 209- 218: dsark AkfVlnytgA daimi YHDG_SALTY : 102- 110: nmgcp AkkVnrkl-A gsall YHDG_SALTY : 209- 218: tnphk AraVldytgA dalmi YJBN_ECOLI : 132- 141: clmgn AxxVadcvkA mrdvv YJBN_ECOLI : 273- 281: ssdtd AdpVavvr-A mypyi YJBN_HAEIN : 121- 130: kadlv AdcVeqmqsA vkipv YJBN_HAEIN : 254- 262: lfdpn ApiVtahe-A vesml YOHI_ECOLI : 154- 162: kkfei AdaVqqag-A telvv YOHI_HAEIN : 154- 162: qafei AdaVeqgg-A teitv YQI2_CAEEL : 111- 119: kpell AdmVrqtr-A ripdp N 14: 12.0102 13( 12) G-x(2,3)-L-x(3)-E Occurrences: 13(12) NIR3_AZOBR : 35- 42: lvkqs Gcg-LvvsE mvasq NIR3_AZOBR : 113- 120: vngha Gss-LmrdE alaar NIR3_RHILP : 28- 35: lawrf Gag-LvvtE mvasr NIR3_RHOCA : 35- 42: mvarf Gag-LvvsE mvasg YACF_BACSU : 34- 41: tvkef Gag-LvcaE mvsdk YHDG_ECOLI : 33- 40: lcyem Gag-LtvsE mmssn YHDG_HAEIN : 33- 40: lcayy Gag-LtfsE mmstn YHDG_SALTY : 33- 40: lcyem Gag-LtvsE mmssn YJBN_ECOLI : 69- 76: iihgk Gdy-LaysE eehpv YJBN_HAEIN : 142- 150: vktri GideLdsyE flcdf YOHI_ECOLI : 109- 117: ngsgg GatlLkdpE liyqg YOHI_HAEIN : 109- 117: ngsng GaalLkqpE liyra YQI2_CAEEL : 100- 108: rskgf GsalLskpE lladm O 15: 12.0102 13( 12) V-x(5)-G-x(0,1)-A Occurrences: 13(12) NIR3_AZOBR : 104- 112: nfgcp VkkvvnGhA gsslm NIR3_RHILP : 99- 107: cpakk ViggysGsA lmrdp NIR3_RHOCA : 108- 115: cpakk VtgglsG-A almrn NIR3_RHOCA : 108- 116: cpakk VtgglsGaA lmrnp NIR3_RHOCA : 226- 233: aagvm VgrgaqG-A pwrla YACF_BACSU : 220- 228: ldetg VdgvmiGrA algnp YHDG_ECOLI : 105- 113: cpakk VnrklaGsA llqyp YHDG_HAEIN : 105- 113: cpakk VnrklaGsA llqfp YHDG_SALTY : 105- 113: cpakk VnrklaGsA llqyp YJBN_ECOLI : 119- 126: cpsdr VqngmfG-A clmgn YJBN_HAEIN : 104- 111: cpsdr VqngmfG-A clmak YOHI_ECOLI : 103- 110: cpskt VngsggG-A tllkd YOHI_HAEIN : 103- 110: cpskt VngsngG-A allkq YOHI_HAEIN : 103- 111: cpskt VngsngGaA llkqp YQI2_CAEEL : 94- 102: cpkhd VrskgfGsA llskp P 16: 12.0102 14( 12) V-x(5)-G-x(2,3)-L Occurrences: 14(12) NIR3_AZOBR : 107- 116: cpvkk VvnghaGss-L mrdea NIR3_RHILP : 99- 108: cpakk ViggysGsa-L mrdpd NIR3_RHOCA : 108- 117: cpakk VtgglsGaa-L mrnpd YACF_BACSU : 220- 230: ldetg VdgvmiGraaL gnpwm YHDG_ECOLI : 105- 114: cpakk VnrklaGsa-L lqypd YHDG_ECOLI : 105- 115: cpakk VnrklaGsalL qypdv YHDG_HAEIN : 105- 114: cpakk VnrklaGsa-L lqfpd YHDG_HAEIN : 105- 115: cpakk VnrklaGsalL qfpdl YHDG_SALTY : 105- 114: cpakk VnrklaGsa-L lqypd YHDG_SALTY : 105- 115: cpakk VnrklaGsalL qypdl YJBN_ECOLI : 119- 128: cpsdr VqngmfGac-L mgnax YJBN_HAEIN : 104- 113: cpsdr VqngmfGac-L makad YOHI_ECOLI : 85- 94: naara VelgswGvd-L ncgcp YOHI_ECOLI : 103- 112: cpskt VngsggGat-L lkdpe YOHI_ECOLI : 103- 113: cpskt VngsggGatlL kdpel YOHI_HAEIN : 103- 112: cpskt VngsngGaa-L lkqpe YOHI_HAEIN : 103- 113: cpskt VngsngGaalL kqpel YQI2_CAEEL : 76- 85: eaaem VykcstGvd-L ncgcp YQI2_CAEEL : 94- 103: cpkhd VrskgfGsa-L lskpe YQI2_CAEEL : 94- 104: cpkhd VrskgfGsalL skpel Q 17: 11.5102 17( 12) V-x(1,3)-L-x-G Occurrences: 17(12) NIR3_AZOBR : 71- 75: qfpma Vq--LaG cepdv NIR3_RHILP : 63- 67: frphm Vq--LaG reahw NIR3_RHOCA : 72- 76: glpts Vq--LaG reaap NIR3_RHOCA : 108- 114: cpakk VtggLsG aalmr YACF_BACSU : 168- 172: aggka Va--LhG rtrvq YHDG_ECOLI : 105- 111: cpakk VnrkLaG sallq YHDG_HAEIN : 105- 111: cpakk VnrkLaG sallq YHDG_HAEIN : 283- 289: iarkh VawyLqG iqpds YHDG_SALTY : 105- 111: cpakk VnrkLaG sallq YHDG_SALTY : 121- 127: qypdl VksiLiG vvnav YJBN_ECOLI : 81- 87: eeehp ValqLgG sdpaa YJBN_HAEIN : 66- 72: lqenp ValqLgG sdpeq YOHI_ECOLI : 65- 71: psgtl VrvqLlG qfpqw YOHI_ECOLI : 67- 71: gtlvr Vq--LlG qfpqw YOHI_HAEIN : 65- 71: ssgtp VrvqLlG qhpkc YOHI_HAEIN : 67- 71: gtpvr Vq--LlG qhpkc YQI2_CAEEL : 270- 276: aqqrr VfneLnG rlaid R 18: 11.5102 22( 12) V-x(2,3)-A-x(3,4)-V Occurrences: 22(12) NIR3_AZOBR : 14- 22: slegp Vil-ApmsgV tdlpf NIR3_AZOBR : 191- 199: sfirs Vke-AvsipV vvngd NIR3_RHILP : 7- 15: svrnr Vvl-ApmsgV tdmpf NIR3_RHILP : 189- 197: revis VpliAngd-V etahd NIR3_RHOCA : 131- 139: rliea Vvg-AvdlpV tlkmr NIR3_RHOCA : 192- 200: raiaa Vra-AvsvpV vangd YACF_BACSU : 13- 21: qlknr Vvl-ApmagV cnsaf YACF_BACSU : 21- 30: apmag VcnsAfrltV kefga YACF_BACSU : 130- 138: emvsa Vvd-AvnkpV tvkmr YACF_BACSU : 160- 168: knaqa Ver-AggkaV alhgr YHDG_ECOLI : 128- 136: silte Vvn-AvdvpV tlkir YHDG_HAEIN : 128- 136: kilre Vvs-AvnvpV tlkir YHDG_HAEIN : 189- 197: dnika Vkq-AiaipV iangd YHDG_SALTY : 69- 77: pgirt Vqi-AgsdpV emada YHDG_SALTY : 128- 136: silig Vvn-AvdvpV tlkir YJBN_ECOLI : 333- 341: gadin VlehAlkl-V adkr YJBN_HAEIN : 317- 325: gagie VvetAlsf-V es YJBN_HAEIN : 318- 325: agiev Vet-Alsf-V es YOHI_ECOLI : 3- 11: mr Vll-ApmegV ldslv YOHI_HAEIN : 3- 11: mr Vil-ApmqgV ldpfv YQI2_CAEEL : 68- 76: tddpf VlseAaem-V ykcst YQI2_CAEEL : 262- 270: ymlrp Vfs-AqqrrV fneln S 19: 11.5102 30( 12) V-x(1,2)-A-x(3,4)-V Occurrences: 30(12) NIR3_AZOBR : 14- 22: slegp VilApmsgV tdlpf NIR3_AZOBR : 191- 199: sfirs VkeAvsipV vvngd NIR3_RHILP : 7- 15: svrnr VvlApmsgV tdmpf NIR3_RHILP : 8- 15: vrnrv Vl-ApmsgV tdmpf NIR3_RHILP : 123- 130: lieat Vk-AvdipV tlkmr NIR3_RHOCA : 131- 139: rliea VvgAvdlpV tlkmr NIR3_RHOCA : 132- 139: lieav Vg-AvdlpV tlkmr NIR3_RHOCA : 192- 198: raiaa Vr-Aavs-V pvvan NIR3_RHOCA : 192- 200: raiaa VraAvsvpV vangd YACF_BACSU : 13- 21: qlknr VvlApmagV cnsaf YACF_BACSU : 14- 21: lknrv Vl-ApmagV cnsaf YACF_BACSU : 81- 87: kketl Ve-Aakf-V dqntt YACF_BACSU : 127- 134: kiyem Vs-AvvdaV nkpvt YACF_BACSU : 130- 138: emvsa VvdAvnkpV tvkmr YACF_BACSU : 131- 138: mvsav Vd-AvnkpV tvkmr YACF_BACSU : 160- 168: knaqa VerAggkaV alhgr YHDG_ECOLI : 128- 136: silte VvnAvdvpV tlkir YHDG_ECOLI : 129- 136: iltev Vn-AvdvpV tlkir YHDG_HAEIN : 128- 136: kilre VvsAvnvpV tlkir YHDG_HAEIN : 129- 136: ilrev Vs-AvnvpV tlkir YHDG_HAEIN : 189- 197: dnika VkqAiaipV iangd YHDG_SALTY : 69- 77: pgirt VqiAgsdpV emada YHDG_SALTY : 128- 136: silig VvnAvdvpV tlkir YHDG_SALTY : 129- 136: iligv Vn-AvdvpV tlkir YJBN_ECOLI : 139- 145: xvadc Vk-Amrd-V vsipv YJBN_ECOLI : 139- 146: xvadc Vk-AmrdvV sipvt YJBN_HAEIN : 257- 263: pnapi Vt-Ahea-V esmlp YJBN_HAEIN : 318- 325: agiev VetAlsf-V es YOHI_ECOLI : 3- 11: mr VllApmegV ldslv YOHI_ECOLI : 130- 136: amrea Vp-Ahlp-V svkvr YOHI_HAEIN : 3- 11: mr VilApmqgV ldpfv YQI2_CAEEL : 262- 270: ymlrp VfsAqqrrV fneln T 20: 11.5102 24( 12) A-x(2,3)-A-x(2,3)-E Occurrences: 24(12) NIR3_AZOBR : 45- 52: vsemv Asq-AmirE nrqtl NIR3_AZOBR : 70- 77: eqfpm AvqlAgc-E pdvma NIR3_AZOBR : 82- 89: epdvm Aea-AklnE drgaa NIR3_AZOBR : 121- 128: lmrde Ala-ArilE ataka NIR3_AZOBR : 153- 161: dssln AprlAriaE ecgik NIR3_AZOBR : 210- 217: itsfd AvdrAla-E sgadg NIR3_RHILP : 145- 153: ensin ApdiArraE asgiq NIR3_RHILP : 179- 185: radwd Air-Avr-E visvp NIR3_RHILP : 228- 236: grpwh AgvlAgaaE prred NIR3_RHILP : 278- 285: ylerf ApalAgt-E kagim NIR3_RHOCA : 154- 162: edqln AaeiAaraE aagvk NIR3_RHOCA : 155- 162: dqlna AeiaAra-E aagvk NIR3_RHOCA : 155- 162: dqlna Aei-AaraE aagvk YACF_BACSU : 153- 161: edhif AvknAqavE raggk YHDG_ECOLI : 312- 318: seqle Ale-Ayf-E nfa YHDG_HAEIN : 80- 88: dplem AqaaAinvE ygaqi YHDG_SALTY : 312- 318: seqle Ale-Ayf-E nfa YJBN_ECOLI : 94- 101: dpaal Aqc-AklaE argyd YJBN_HAEIN : 117- 125: clmak AdlvAdcvE qmqsa YOHI_ECOLI : 78- 86: fpqwl AenaAravE lgswg YOHI_ECOLI : 156- 164: feiad AvqqAgatE lvvhg YOHI_ECOLI : 306- 313: pdiar Aiq-AidiE kl YOHI_HAEIN : 125- 133: yratq AlrrAvpsE fpvsv YOHI_HAEIN : 150- 158: ddisq AfeiAdavE qggat YQI2_CAEEL : 221- 227: lldnp Alf-Agh-E htpsd Number of patterns evaluated by Pratt:2995 Total running time: 4 seconds