------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file YER057C_YJGF PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename YER057C_YJGF.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: YABJ_BACSU 125 YEO7_YEAST 129 YHAR_ECOLI 150 YIF1_YEAST 145 YJGF_ECOLI 127 YJGF_HAEIN 130 YVN1_AZOVI 127 Pratt run started at Thu Feb 6 21:36:08 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 7( 7) P-x-R-x(5)-A-x-L-P-x(5)-E-x(3)-I 2: 25.0203 7( 7) R-x(5)-A-x-L-P-x(5)-E-x(3)-I 3: 25.0203 7( 7) K-x(3)-F-x(2)-D-x(3)-F-A-x(2)-N 4: 25.0203 7( 7) S-G-Q-I-P-x(2)-P 5: 24.5203 8( 7) S-x(0,1)-G-Q-I-P-x(2)-P 6: 20.8503 7( 7) A-x-L-P-x(5)-E-x(3)-I 7: 20.8503 7( 7) F-x(2)-D-x(3)-F-A-x(2)-N 8: 20.8503 7( 7) G-Q-I-P-x(2)-P 9: 16.6802 7( 7) L-P-x(5)-E-x(3)-I 10: 16.6802 7( 7) D-x(3)-F-A-x(2)-N 11: 16.6802 7( 7) Q-I-P-x(2)-P 12: 15.6802 7( 7) A-P-x(0,1)-A-x(3,4)-Y 13: 15.1802 8( 7) V-x(4)-F-x(0,2)-D-x(3,4)-A 14: 12.5102 7( 7) P-x(5)-E-x(3)-I 15: 12.5102 7( 7) F-A-x(2)-N 16: 12.5102 7( 7) I-P-x(2)-P 17: 12.5102 7( 7) P-x-A-x(3)-Y 18: 12.0102 8( 7) V-x(4)-K-x(3,4)-E 19: 12.0102 11( 7) V-x-V-x(2,3)-L 20: 12.0102 10( 7) R-x(4)-V-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 95.6725 7( 7) P-[AGP]-A-[AI]-[AG]-[PST]-Y-[SV]-x-[AG]-[IMV]-x-[ALV]-[GN]-[DNS]-x-[FIV]-x(2)-S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV] B 2: 84.4910 7( 7) A-P-x(0,1)-A-x(3,4)-Y-[SV]-x-[AG]-[IMV]-x-[ALV]-[GN]-[DNS]-x-[FIV]-x(2)-S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN] C 3: 70.7112 7( 7) P-[AT]-R-[AS]-[AC]-[IV]-[AEGQ]-[CV]-A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] D 4: 66.6482 7( 7) K-x-[NT]-[IV]-F-[ILV]-x-D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] E 5: 63.3431 7( 7) R-[AS]-[AC]-[IV]-[AEGQ]-[CV]-A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] F 6: 59.7128 7( 7) S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] G 7: 59.2128 8( 7) S-x(0,1)-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] H 8: 56.0589 7( 7) F-[ILV]-x-D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] I 9: 55.5428 7( 7) G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] J 10: 52.2698 7( 7) R-[AS]-[CG]-[DV]-[AEGQT]-V-x(1,2)-L-[PS]-x-[DGNQ]-[AIV]-x-[ILMV]-[DE]-x-[EG]-[ATV]-[IM]-[AE]-[ALV] K 11: 51.3727 7( 7) Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] L 12: 49.2270 7( 7) D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] M 13: 47.2027 7( 7) I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] N 14: 43.9507 7( 7) A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] O 15: 42.1681 7( 7) F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] P 16: 39.7806 7( 7) L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Q 17: 35.6106 7( 7) P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] R 18: 33.8258 7( 7) V-x-V-x(2,3)-L-x(2)-[DGNV]-[AV]-x(2)-[AE]-x-[EG]-[ASV]-[FI]-A S 19: 25.8074 7( 7) V-x(2)-[NQT]-[FIV]-F-x(0,2)-D-x(3,4)-A-x(2)-[NP]-[AEST] T 20: 20.2659 8( 7) V-x-[EQRS]-x-[ILPV]-K-x(3,4)-E-x-[AEGNS]-[AGNSV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 95.6725 7( 7) P-[AGP]-A-[AI]-[AG]-[PST]-Y-[SV]-x-[AG]-[IMV]-x-[ALV]-[GN]-[DNS]-x-[FIV]-x(2)-S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV] Occurences: 7(7) YABJ_BACSU : 11- 60: htkha PAAIGPYSqGIiVNNmFysSGQIPlTPsGemVnGDikEqThqvFsNlkaV leeag YEO7_YEAST : 14- 63: icesa PAAAASYShAMkVNNlIflSGQIPvTPdNklVeGSiaDkAeqvIqNiknV leasn YHAR_ECOLI : 32- 81: etqra PGAIGPYVqGVdLGSmVftSGQIPvCPqTgeIpADvqDqArlsLeNvkaI vvaag YIF1_YEAST : 30- 79: stkla PPAAASYSqAMkANNfVyvSGQIPyTPdNkpVqGSisEkAeqvFqNvknI laesn YJGF_ECOLI : 10- 59: atena PAAIGPYVqGVdLGNmIitSGQIPvNPkTgeVpADvaAqArqsLdNvkaI veaag YJGF_HAEIN : 12- 61: hteka PAAIGPYVqAVdLGNlVltSGQIPvNPaTgeVpADivAqArqsLeNvkaI iekag YVN1_AZOVI : 12- 61: ntdka PAAIGTYSqAIrAGDtVylSGQIPlDPgTmeLvEGdfEaQtvrVfEnlkA vveaa B 2: 84.4910 7( 7) A-P-x(0,1)-A-x(3,4)-Y-[SV]-x-[AG]-[IMV]-x-[ALV]-[GN]-[DNS]-x-[FIV]-x(2)-S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN] Occurences: 7(7) YABJ_BACSU : 10- 56: vhtkh APaAigp-YSqGIiVNNmFysSGQIPlTPsGemVnGDikEqThqvFsN lkavl YABJ_BACSU : 10- 56: vhtkh AP-AaigpYSqGIiVNNmFysSGQIPlTPsGemVnGDikEqThqvFsN lkavl YEO7_YEAST : 13- 59: vices APaAaas-YShAMkVNNlIflSGQIPvTPdNklVeGSiaDkAeqvIqN iknvl YEO7_YEAST : 13- 59: vices AP-AaaasYShAMkVNNlIflSGQIPvTPdNklVeGSiaDkAeqvIqN iknvl YHAR_ECOLI : 31- 77: ietqr APgAigp-YVqGVdLGSmVftSGQIPvCPqTgeIpADvqDqArlsLeN vkaiv YIF1_YEAST : 29- 75: vstkl APpAaas-YSqAMkANNfVyvSGQIPyTPdNkpVqGSisEkAeqvFqN vknil YJGF_ECOLI : 9- 55: iaten APaAigp-YVqGVdLGNmIitSGQIPvNPkTgeVpADvaAqArqsLdN vkaiv YJGF_ECOLI : 9- 55: iaten AP-AaigpYVqGVdLGNmIitSGQIPvNPkTgeVpADvaAqArqsLdN vkaiv YJGF_HAEIN : 11- 57: ihtek APaAigp-YVqAVdLGNlVltSGQIPvNPaTgeVpADivAqArqsLeN vkaii YJGF_HAEIN : 11- 57: ihtek AP-AaigpYVqAVdLGNlVltSGQIPvNPaTgeVpADivAqArqsLeN vkaii YVN1_AZOVI : 11- 57: intdk APaAigt-YSqAIrAGDtVylSGQIPlDPgTmeLvEGdfEaQtvrVfE nlkav YVN1_AZOVI : 11- 57: intdk AP-AaigtYSqAIrAGDtVylSGQIPlDPgTmeLvEGdfEaQtvrVfE nlkav C 3: 70.7112 7( 7) P-[AT]-R-[AS]-[AC]-[IV]-[AEGQ]-[CV]-A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Occurences: 7(7) YABJ_BACSU : 100- 123: fdthk PARSCVEVArLPkDAlVEIEVIAL vk YEO7_YEAST : 103- 126: fnthk PARSCVAVAaLPlGVdMEMEAIAA erd YHAR_ECOLI : 124- 147: hqaty PTRSCVQVArLPkDVkLEIEAIAV rsa YIF1_YEAST : 119- 142: fhthk PARSCVGVAsLPlNVdLEMEVIAV ekn YJGF_ECOLI : 102- 125: hnatf PARSCVEVArLPkDVkIEIEAIAV rr YJGF_HAEIN : 105- 128: nhpnf PARSCVEVArLPkDVgLEIEAIAV rk YVN1_AZOVI : 102- 125: faqpy PARAAIACAsLPrGAqVEMDGILV lg D 4: 66.6482 7( 7) K-x-[NT]-[IV]-F-[ILV]-x-D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] Occurences: 7(7) YABJ_BACSU : 73- 114: fetvv KaTVFIaDMeqFAeVNEvygqYFdThkpArsCveVArlPkdA lveie YEO7_YEAST : 76- 117: ldrvv KvNIFLaDInhFAeFNSvyakYFnThkpArsCvaVAalPlgV dmeme YHAR_ECOLI : 94- 135: vgdii KmTVFItDLndFAtINEvykqFFdEhqaTypTrsCVqvArlP kdvkl YIF1_YEAST : 92- 133: ldniv KvNVFLaDMknFAeFNSvyakHFhThkpArsCvgVAslPlnV dleme YJGF_ECOLI : 72- 113: vgdiv KtTVFVkDLndFAtVNAtyeaFFtEhnaTfpArsCVevArlP kdvki YJGF_HAEIN : 74- 115: aadiv KtTVFVkDLndFAaVNAeyerFFkEnnhPnfParSCveVarL pkdvg YVN1_AZOVI : 75- 116: fadiv KlNIFLtDLahFAkVNEvmgrYFaQpypAraAiaCAslPrgA qvemd E 5: 63.3431 7( 7) R-[AS]-[AC]-[IV]-[AEGQ]-[CV]-A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Occurences: 7(7) YABJ_BACSU : 102- 123: thkpa RSCVEVArLPkDAlVEIEVIAL vk YEO7_YEAST : 105- 126: thkpa RSCVAVAaLPlGVdMEMEAIAA erd YHAR_ECOLI : 126- 147: atypt RSCVQVArLPkDVkLEIEAIAV rsa YIF1_YEAST : 121- 142: thkpa RSCVGVAsLPlNVdLEMEVIAV ekn YJGF_ECOLI : 104- 125: atfpa RSCVEVArLPkDVkIEIEAIAV rr YJGF_HAEIN : 107- 128: pnfpa RSCVEVArLPkDVgLEIEAIAV rk YVN1_AZOVI : 104- 125: qpypa RAAIACAsLPrGAqVEMDGILV lg F 6: 59.7128 7( 7) S-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] Occurences: 7(7) YABJ_BACSU : 30- 65: nmfys SGQIPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YEO7_YEAST : 33- 68: nlifl SGQIPvTPdNklVeGSiaDkAeqvIqNiknVLeaSN ssldr YHAR_ECOLI : 51- 86: smvft SGQIPvCPqTgeIpADvqDqArlsLeNvkaIVvaAG lsvgd YIF1_YEAST : 49- 84: nfvyv SGQIPyTPdNkpVqGSisEkAeqvFqNvknILaeSN ssldn YJGF_ECOLI : 29- 64: nmiit SGQIPvNPkTgeVpADvaAqArqsLdNvkaIVeaAG lkvgd YJGF_HAEIN : 31- 66: nlvlt SGQIPvNPaTgeVpADivAqArqsLeNvkaIIekAG ltaad YVN1_AZOVI : 31- 66: dtvyl SGQIPlDPgTmeLvEGdfEaQtvrVfEnlkAVveAA ggsfa G 7: 59.2128 8( 7) S-x(0,1)-G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] Occurences: 8(7) YABJ_BACSU : 29- 65: nnmfy SsGQIPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YABJ_BACSU : 30- 65: nmfys S-GQIPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YEO7_YEAST : 33- 68: nlifl S-GQIPvTPdNklVeGSiaDkAeqvIqNiknVLeaSN ssldr YHAR_ECOLI : 51- 86: smvft S-GQIPvCPqTgeIpADvqDqArlsLeNvkaIVvaAG lsvgd YIF1_YEAST : 49- 84: nfvyv S-GQIPyTPdNkpVqGSisEkAeqvFqNvknILaeSN ssldn YJGF_ECOLI : 29- 64: nmiit S-GQIPvNPkTgeVpADvaAqArqsLdNvkaIVeaAG lkvgd YJGF_HAEIN : 31- 66: nlvlt S-GQIPvNPaTgeVpADivAqArqsLeNvkaIIekAG ltaad YVN1_AZOVI : 31- 66: dtvyl S-GQIPlDPgTmeLvEGdfEaQtvrVfEnlkAVveAA ggsfa H 8: 56.0589 7( 7) F-[ILV]-x-D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] Occurences: 7(7) YABJ_BACSU : 77- 114: vkatv FIaDMeqFAeVNEvygqYFdThkpArsCveVArlPkdA lveie YEO7_YEAST : 80- 117: vkvni FLaDInhFAeFNSvyakYFnThkpArsCvaVAalPlgV dmeme YHAR_ECOLI : 98- 135: ikmtv FItDLndFAtINEvykqFFdEhqaTypTrsCVqvArlP kdvkl YIF1_YEAST : 96- 133: vkvnv FLaDMknFAeFNSvyakHFhThkpArsCvgVAslPlnV dleme YJGF_ECOLI : 76- 113: vkttv FVkDLndFAtVNAtyeaFFtEhnaTfpArsCVevArlP kdvki YJGF_HAEIN : 78- 115: vkttv FVkDLndFAaVNAeyerFFkEnnhPnfParSCveVarL pkdvg YVN1_AZOVI : 79- 116: vklni FLtDLahFAkVNEvmgrYFaQpypAraAiaCAslPrgA qvemd I 9: 55.5428 7( 7) G-Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] Occurences: 7(7) YABJ_BACSU : 31- 65: mfyss GQIPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YEO7_YEAST : 34- 68: lifls GQIPvTPdNklVeGSiaDkAeqvIqNiknVLeaSN ssldr YHAR_ECOLI : 52- 86: mvfts GQIPvCPqTgeIpADvqDqArlsLeNvkaIVvaAG lsvgd YIF1_YEAST : 50- 84: fvyvs GQIPyTPdNkpVqGSisEkAeqvFqNvknILaeSN ssldn YJGF_ECOLI : 30- 64: miits GQIPvNPkTgeVpADvaAqArqsLdNvkaIVeaAG lkvgd YJGF_HAEIN : 32- 66: lvlts GQIPvNPaTgeVpADivAqArqsLeNvkaIIekAG ltaad YVN1_AZOVI : 32- 66: tvyls GQIPlDPgTmeLvEGdfEaQtvrVfEnlkAVveAA ggsfa J 10: 52.2698 7( 7) R-[AS]-[CG]-[DV]-[AEGQT]-V-x(1,2)-L-[PS]-x-[DGNQ]-[AIV]-x-[ILMV]-[DE]-x-[EG]-[ATV]-[IM]-[AE]-[ALV] Occurences: 7(7) YABJ_BACSU : 102- 123: thkpa RSCVEVarLPkDAlVEiEVIAL vk YEO7_YEAST : 105- 126: thkpa RSCVAVaaLPlGVdMEmEAIAA erd YHAR_ECOLI : 126- 147: atypt RSCVQVarLPkDVkLEiEAIAV rsa YIF1_YEAST : 121- 142: thkpa RSCVGVasLPlNVdLEmEVIAV ekn YJGF_ECOLI : 104- 125: atfpa RSCVEVarLPkDVkIEiEAIAV rr YJGF_HAEIN : 107- 128: pnfpa RSCVEVarLPkDVgLEiEAIAV rk YVN1_AZOVI : 23- 43: ysqai RAGDTVy-LSgQIpLDpGTMEL vegdf K 11: 51.3727 7( 7) Q-I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] Occurences: 7(7) YABJ_BACSU : 32- 65: fyssg QIPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YEO7_YEAST : 35- 68: iflsg QIPvTPdNklVeGSiaDkAeqvIqNiknVLeaSN ssldr YHAR_ECOLI : 53- 86: vftsg QIPvCPqTgeIpADvqDqArlsLeNvkaIVvaAG lsvgd YIF1_YEAST : 51- 84: vyvsg QIPyTPdNkpVqGSisEkAeqvFqNvknILaeSN ssldn YJGF_ECOLI : 31- 64: iitsg QIPvNPkTgeVpADvaAqArqsLdNvkaIVeaAG lkvgd YJGF_HAEIN : 33- 66: vltsg QIPvNPaTgeVpADivAqArqsLeNvkaIIekAG ltaad YVN1_AZOVI : 33- 66: vylsg QIPlDPgTmeLvEGdfEaQtvrVfEnlkAVveAA ggsfa L 12: 49.2270 7( 7) D-[ILM]-x(2)-F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] Occurences: 7(7) YABJ_BACSU : 80- 114: tvfia DMeqFAeVNEvygqYFdThkpArsCveVArlPkdA lveie YEO7_YEAST : 83- 117: nifla DInhFAeFNSvyakYFnThkpArsCvaVAalPlgV dmeme YHAR_ECOLI : 101- 135: tvfit DLndFAtINEvykqFFdEhqaTypTrsCVqvArlP kdvkl YIF1_YEAST : 99- 133: nvfla DMknFAeFNSvyakHFhThkpArsCvgVAslPlnV dleme YJGF_ECOLI : 79- 113: tvfvk DLndFAtVNAtyeaFFtEhnaTfpArsCVevArlP kdvki YJGF_HAEIN : 81- 115: tvfvk DLndFAaVNAeyerFFkEnnhPnfParSCveVarL pkdvg YVN1_AZOVI : 82- 116: niflt DLahFAkVNEvmgrYFaQpypAraAiaCAslPrgA qvemd M 13: 47.2027 7( 7) I-P-x-[CDNT]-P-x-[GNT]-x(2)-[ILV]-x-[AEG]-[DGS]-x(2)-[ADE]-x-[AQT]-x(3)-[FILV]-x-[EN]-x(3)-[AIV]-[ILV]-x(2)-[AS]-[AGN] Occurences: 7(7) YABJ_BACSU : 33- 65: yssgq IPlTPsGemVnGDikEqThqvFsNlkaVLeeAG asfet YEO7_YEAST : 36- 68: flsgq IPvTPdNklVeGSiaDkAeqvIqNiknVLeaSN ssldr YHAR_ECOLI : 54- 86: ftsgq IPvCPqTgeIpADvqDqArlsLeNvkaIVvaAG lsvgd YIF1_YEAST : 52- 84: yvsgq IPyTPdNkpVqGSisEkAeqvFqNvknILaeSN ssldn YJGF_ECOLI : 32- 64: itsgq IPvNPkTgeVpADvaAqArqsLdNvkaIVeaAG lkvgd YJGF_HAEIN : 34- 66: ltsgq IPvNPaTgeVpADivAqArqsLeNvkaIIekAG ltaad YVN1_AZOVI : 34- 66: ylsgq IPlDPgTmeLvEGdfEaQtvrVfEnlkAVveAA ggsfa N 14: 43.9507 7( 7) A-x-L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Occurences: 7(7) YABJ_BACSU : 108- 123: scvev ArLPkDAlVEIEVIAL vk YEO7_YEAST : 111- 126: scvav AaLPlGVdMEMEAIAA erd YHAR_ECOLI : 132- 147: scvqv ArLPkDVkLEIEAIAV rsa YIF1_YEAST : 127- 142: scvgv AsLPlNVdLEMEVIAV ekn YJGF_ECOLI : 110- 125: scvev ArLPkDVkIEIEAIAV rr YJGF_HAEIN : 113- 128: scvev ArLPkDVgLEIEAIAV rk YVN1_AZOVI : 110- 125: aaiac AsLPrGAqVEMDGILV lg O 15: 42.1681 7( 7) F-A-x-[FIV]-N-[AES]-x(4)-[FHY]-F-x-[EQT]-x(3)-[APT]-x(2)-[ACPT]-x(2)-[CSV]-[ACV]-x(2)-[APV]-x(2)-[ALPV] Occurences: 7(7) YABJ_BACSU : 84- 114: admeq FAeVNEvygqYFdThkpArsCveVArlPkdA lveie YEO7_YEAST : 87- 117: adinh FAeFNSvyakYFnThkpArsCvaVAalPlgV dmeme YHAR_ECOLI : 105- 135: tdlnd FAtINEvykqFFdEhqaTypTrsCVqvArlP kdvkl YIF1_YEAST : 103- 133: admkn FAeFNSvyakHFhThkpArsCvgVAslPlnV dleme YJGF_ECOLI : 83- 113: kdlnd FAtVNAtyeaFFtEhnaTfpArsCVevArlP kdvki YJGF_HAEIN : 85- 115: kdlnd FAaVNAeyerFFkEnnhPnfParSCveVarL pkdvg YVN1_AZOVI : 86- 116: tdlah FAkVNEvmgrYFaQpypAraAiaCAslPrgA qvemd P 16: 39.7806 7( 7) L-P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Occurences: 7(7) YABJ_BACSU : 110- 123: vevar LPkDAlVEIEVIAL vk YEO7_YEAST : 113- 126: vavaa LPlGVdMEMEAIAA erd YHAR_ECOLI : 134- 147: vqvar LPkDVkLEIEAIAV rsa YIF1_YEAST : 129- 142: vgvas LPlNVdLEMEVIAV ekn YJGF_ECOLI : 112- 125: vevar LPkDVkIEIEAIAV rr YJGF_HAEIN : 115- 128: vevar LPkDVgLEIEAIAV rk YVN1_AZOVI : 112- 125: iacas LPrGAqVEMDGILV lg Q 17: 35.6106 7( 7) P-x-[DGN]-[AV]-x-[ILMV]-E-[IM]-[DE]-[AGV]-I-[AL]-[ALV] Occurences: 7(7) YABJ_BACSU : 111- 123: evarl PkDAlVEIEVIAL vk YEO7_YEAST : 114- 126: avaal PlGVdMEMEAIAA erd YHAR_ECOLI : 135- 147: qvarl PkDVkLEIEAIAV rsa YIF1_YEAST : 130- 142: gvasl PlNVdLEMEVIAV ekn YJGF_ECOLI : 113- 125: evarl PkDVkIEIEAIAV rr YJGF_HAEIN : 116- 128: evarl PkDVgLEIEAIAV rk YVN1_AZOVI : 113- 125: acasl PrGAqVEMDGILV lg R 18: 33.8258 7( 7) V-x-V-x(2,3)-L-x(2)-[DGNV]-[AV]-x(2)-[AE]-x-[EG]-[ASV]-[FI]-A Occurences: 7(7) YABJ_BACSU : 105- 122: parsc VeVar-LpkDAlvEiEVIA lvk YEO7_YEAST : 108- 125: parsc VaVaa-LplGVdmEmEAIA aerd YHAR_ECOLI : 129- 146: ptrsc VqVar-LpkDVklEiEAIA vrsa YIF1_YEAST : 124- 141: parsc VgVas-LplNVdlEmEVIA vekn YJGF_ECOLI : 107- 124: parsc VeVar-LpkDVkiEiEAIA vrr YJGF_HAEIN : 110- 127: parsc VeVar-LpkDVglEiEAIA vrk YVN1_AZOVI : 53- 71: feaqt VrVfenLkaVVeaAgGSFA divkl S 19: 25.8074 7( 7) V-x(2)-[NQT]-[FIV]-F-x(0,2)-D-x(3,4)-A-x(2)-[NP]-[AEST] Occurences: 7(7) YABJ_BACSU : 72- 89: sfetv VkaTVFiaDmeqfAevNE vygqy YEO7_YEAST : 75- 92: sldrv VkvNIFlaDinhfAefNS vyaky YHAR_ECOLI : 111- 125: atine VykQFF--Dehq-AtyPT rscvq YIF1_YEAST : 91- 108: sldni VkvNVFlaDmknfAefNS vyakh YJGF_ECOLI : 71- 88: kvgdi VktTVFvkDlndfAtvNA tyeaf YJGF_HAEIN : 73- 90: taadi VktTVFvkDlndfAavNA eyerf YVN1_AZOVI : 74- 91: sfadi VklNIFltDlahfAkvNE vmgry T 20: 20.2659 8( 7) V-x-[EQRS]-x-[ILPV]-K-x(3,4)-E-x-[AEGNS]-[AGNSV] Occurences: 8(7) YABJ_BACSU : 53- 65: eqthq VfSnLKavl-EeAG asfet YABJ_BACSU : 53- 66: eqthq VfSnLKavleEaGA sfetv YABJ_BACSU : 107- 120: rscve VaRlPKdalvEiEV ialvk YEO7_YEAST : 56- 68: dkaeq ViQnIKnvl-EaSN ssldr YHAR_ECOLI : 131- 144: rscvq VaRlPKdvklEiEA iavrs YIF1_YEAST : 72- 85: ekaeq VfQnVKnilaEsNS sldni YJGF_ECOLI : 109- 122: rscve VaRlPKdvkiEiEA iavrr YJGF_HAEIN : 112- 125: rscve VaRlPKdvglEiEA iavrk YVN1_AZOVI : 55- 67: aqtvr VfEnLKavv-EaAG gsfad Number of patterns evaluated by Pratt:1040 Total running time: 0 seconds