------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file YCIL PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename YCIL.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: Y694_HAEIN 240 YCIL_BUCAP 258 YCIL_ECOLI 291 YCIL_HAEIN 357 YEJD_ECOLI 231 YEJD_HAEIN 232 YJBC_ECOLI 290 YPUL_BACSU 229 Pratt run started at Thu Feb 6 21:36:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 35.5305 8( 8) G-R-L-D-x(4)-G-L-x(0,2)-L-x(0,2)-T-x(2)-G 2: 31.3604 8( 8) R-L-D-x(4)-G-L-x(0,2)-L-x(0,2)-T-x(2)-G 3: 27.1904 8( 8) L-D-x(4)-G-L-x(0,2)-L-x(0,2)-T-x(2)-G 4: 23.0203 8( 8) D-x(4)-G-L-x(0,2)-L-x(0,2)-T-x(2)-G 5: 19.3503 10( 8) D-x(5)-L-x(0,2)-L-x(0,1)-T-x(2)-G 6: 18.8503 8( 8) G-L-x(0,2)-L-x(0,2)-T-x(2)-G 7: 15.6802 10( 8) L-x(1,2)-L-x(0,1)-T-x(2)-G 8: 15.1802 14( 8) L-x(5)-G-x(2,3)-L-x(2,4)-G 9: 15.1802 15( 8) L-x(0,2)-L-x(0,1)-T-x(2)-G 10: 14.6802 9( 8) G-L-x(1,3)-T-x(0,2)-G 11: 14.6802 10( 8) L-x(3,5)-G-L-x(1,3)-T 12: 14.6802 15( 8) L-x(0,2)-L-x(0,2)-T-x(2)-G 13: 14.6802 13( 8) D-x(2,4)-G-L-x(0,2)-L 14: 12.5102 11( 8) L-x(2)-G-x(2)-R 15: 12.0102 12( 8) L-x(5)-G-x(3,4)-L 16: 12.0102 9( 8) G-x(0,1)-R-L 17: 12.0102 12( 8) L-x(2)-G-x(1,2)-R 18: 12.0102 9( 8) L-x(3,4)-L-x(2)-G 19: 12.0102 9( 8) I-x(4)-V-x(3,4)-G 20: 12.0102 10( 8) G-x(4)-T-x(0,1)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 81.5837 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-[ILV]-[FIL]-[FLM]-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] B 2: 75.5153 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] C 3: 71.3452 8( 8) R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] D 4: 67.1752 8( 8) L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] E 5: 63.5051 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] F 6: 63.0052 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] G 7: 56.7331 8( 8) L-D-x-[DN]-[ST]-x-G-x(2,3)-L-x(2,4)-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] H 8: 52.4857 8( 8) G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] I 9: 52.4857 8( 8) L-x(3,5)-G-L-x(1,3)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] J 10: 49.3157 10( 8) L-x(1,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] K 11: 48.8157 15( 8) L-x(0,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] L 12: 48.3157 15( 8) L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] M 13: 45.7136 8( 8) G-L-x(1,3)-T-x(0,2)-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] N 14: 37.7098 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T O 15: 33.5398 8( 8) R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T P 16: 29.3697 8( 8) L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T Q 17: 25.6997 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,1)-T R 18: 25.1997 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T S 19: 23.7648 13( 8) D-x(2,4)-G-L-x(0,2)-L-x-[NT]-x-[DG]-[DEG] T 20: 22.4698 8( 8) G-[IL]-[LPV]-x(2)-T-x(0,1)-D-x-[AEGQT]-x(2)-[NRS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 81.5837 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-[ILV]-[FIL]-[FLM]-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 88- 125: nvyaa GRLDrDSeGLLILTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 107- 144: rwvsv GRLDiNTkGLLLFTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 107- 144: rwiav GRLDvNTcGLLLFTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 180- 217: rwiav GRLDiNTsGLLLFTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 99- 136: klhaa GRLDiDTtGLVLMTDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 99- 136: klhsa GRLDvDTtGLVLLTDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 104- 141: rvfpi GRLDkDSqGLIFLTNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 99- 136: riypi GRLDyDTsGLLLLTNdGEfanKLmhPkyeiDKTYvAkV kgipp B 2: 75.5153 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 88- 125: nvyaa GRLDrDSeGLliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 88- 125: nvyaa GRLDrDSeGL--LilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 107- 144: rwvsv GRLDiNTkGLl-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 107- 144: rwvsv GRLDiNTkGL--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 107- 144: rwiav GRLDvNTcGLl-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 107- 144: rwiav GRLDvNTcGL--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 180- 217: rwiav GRLDiNTsGLl-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 180- 217: rwiav GRLDiNTsGL--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 99- 136: klhaa GRLDiDTtGLv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 99- 136: klhsa GRLDvDTtGLvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 99- 136: klhsa GRLDvDTtGLv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 104- 141: rvfpi GRLDkDSqGLifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 99- 136: riypi GRLDyDTsGLllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 99- 136: riypi GRLDyDTsGLl-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 99- 136: riypi GRLDyDTsGL--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp C 3: 71.3452 8( 8) R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 89- 125: vyaag RLDrDSeGLliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 89- 125: vyaag RLDrDSeGL--LilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 108- 144: wvsvg RLDiNTkGLl-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 108- 144: wvsvg RLDiNTkGL--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 108- 144: wiavg RLDvNTcGLl-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 108- 144: wiavg RLDvNTcGL--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 181- 217: wiavg RLDiNTsGLl-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 181- 217: wiavg RLDiNTsGL--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 100- 136: lhaag RLDiDTtGLv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 100- 136: lhsag RLDvDTtGLvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 100- 136: lhsag RLDvDTtGLv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 105- 141: vfpig RLDkDSqGLifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 100- 136: iypig RLDyDTsGLllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 100- 136: iypig RLDyDTsGLl-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 100- 136: iypig RLDyDTsGL--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp D 4: 67.1752 8( 8) L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 90- 125: yaagr LDrDSeGLliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 90- 125: yaagr LDrDSeGL--LilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 109- 144: vsvgr LDiNTkGLl-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 109- 144: vsvgr LDiNTkGL--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 109- 144: iavgr LDvNTcGLl-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 109- 144: iavgr LDvNTcGL--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 182- 217: iavgr LDiNTsGLl-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 182- 217: iavgr LDiNTsGL--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 101- 136: haagr LDiDTtGLv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 101- 136: hsagr LDvDTtGLvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 101- 136: hsagr LDvDTtGLv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 106- 141: fpigr LDkDSqGLifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 101- 136: ypigr LDyDTsGLllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 101- 136: ypigr LDyDTsGLl-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 101- 136: ypigr LDyDTsGL--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp E 5: 63.5051 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 91- 125: aagrl DrDSeGLliL-TNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 110- 144: svgrl DiNTkGLl-LfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 110- 144: avgrl DvNTcGLl-LfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 183- 217: avgrl DiNTsGLl-LfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 102- 136: aagrl DiDTtGLv-LmTDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 102- 136: sagrl DvDTtGLvlL-TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 102- 136: sagrl DvDTtGLv-LlTDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 107- 141: pigrl DkDSqGLifL-TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 102- 136: pigrl DyDTsGLllL-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 102- 136: pigrl DyDTsGLl-LlTNdGEfanKLmhPkyeiDKTYvAkV kgipp F 6: 63.0052 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 91- 125: aagrl DrDSeGLliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 91- 125: aagrl DrDSeGL--LilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 110- 144: svgrl DiNTkGLl-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 110- 144: svgrl DiNTkGL--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 110- 144: avgrl DvNTcGLl-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 110- 144: avgrl DvNTcGL--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 183- 217: avgrl DiNTsGLl-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 183- 217: avgrl DiNTsGL--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 102- 136: aagrl DiDTtGLv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 102- 136: sagrl DvDTtGLvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 102- 136: sagrl DvDTtGLv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 107- 141: pigrl DkDSqGLifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 102- 136: pigrl DyDTsGLllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 102- 136: pigrl DyDTsGLl-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 102- 136: pigrl DyDTsGL--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp G 7: 56.7331 8( 8) L-D-x-[DN]-[ST]-x-G-x(2,3)-L-x(2,4)-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 90- 125: yaagr LDrDSeGlliLtnn-GElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 109- 144: vsvgr LDiNTkGll-LftndGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 109- 144: iavgr LDvNTcGll-LfttdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 182- 217: iavgr LDiNTsGll-LfttdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 101- 136: haagr LDiDTtGlv-LmtddGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 101- 136: hsagr LDvDTtGlvlLtdd-GQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 101- 136: hsagr LDvDTtGlv-LltddGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 106- 141: fpigr LDkDSqGlifLtnh-GDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 101- 136: ypigr LDyDTsGlllLtnd-GEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 101- 136: ypigr LDyDTsGll-LltndGEfanKLmhPkyeiDKTYvAkV kgipp H 8: 52.4857 8( 8) G-L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 96- 125: drdse GLliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 96- 125: drdse GL--LilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 115- 144: dintk GLl-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 115- 144: dintk GL--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 115- 144: dvntc GLl-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 115- 144: dvntc GL--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 188- 217: dints GLl-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 188- 217: dints GL--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 107- 136: didtt GLv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 107- 136: dvdtt GLvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 107- 136: dvdtt GLv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 112- 141: dkdsq GLifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 107- 136: dydts GLllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 107- 136: dydts GLl-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 107- 136: dydts GL--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp I 9: 52.4857 8( 8) L-x(3,5)-G-L-x(1,3)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 90- 125: yaagr LdrdseGLlilTNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 109- 144: vsvgr LdintkGLllfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 109- 144: iavgr LdvntcGLllfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 182- 217: iavgr LdintsGLllfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 101- 136: haagr LdidttGLvlmTDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 101- 136: hsagr LdvdttGLvllTDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 106- 141: fpigr LdkdsqGLiflTNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 101- 136: ypigr LdydtsGLlllTNdGEfanKLmhPkyeiDKTYvAkV kgipp J 10: 49.3157 10( 8) L-x(1,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 10(8) Y694_HAEIN : 97- 125: rdseg LliL-TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 98- 125: dsegl Li-L-TNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 116- 144: intkg Ll-LfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 116- 144: vntcg Ll-LfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 189- 217: intsg Ll-LfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 108- 136: idttg Lv-LmTDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 108- 136: vdttg LvlL-TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 108- 136: vdttg Lv-LlTDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 113- 141: kdsqg LifL-TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 108- 136: ydtsg LllL-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 108- 136: ydtsg Ll-LlTNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 109- 136: dtsgl Ll-L-TNdGEfanKLmhPkyeiDKTYvAkV kgipp K 11: 48.8157 15( 8) L-x(0,2)-L-x(0,1)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 15(8) Y694_HAEIN : 97- 125: rdseg LliL-TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 98- 125: dsegl Li-L-TNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 116- 144: intkg Ll-LfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 117- 144: ntkgl L--LfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 116- 144: vntcg Ll-LfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 117- 144: ntcgl L--LfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 189- 217: intsg Ll-LfTTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 190- 217: ntsgl L--LfTTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 108- 136: idttg Lv-LmTDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 108- 136: vdttg LvlL-TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 108- 136: vdttg Lv-LlTDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 110- 136: ttglv L--L-TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 113- 141: kdsqg LifL-TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 108- 136: ydtsg LllL-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 108- 136: ydtsg Ll-LlTNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 109- 136: dtsgl Ll-L-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 109- 136: dtsgl L--LlTNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 110- 136: tsgll L--L-TNdGEfanKLmhPkyeiDKTYvAkV kgipp L 12: 48.3157 15( 8) L-x(0,2)-L-x(0,2)-T-[DNT]-x-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 15(8) Y694_HAEIN : 97- 125: rdseg LliL--TNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 97- 125: rdseg L--LilTNnGElqhRLadPkfktEKTYwVqV egipe Y694_HAEIN : 98- 125: dsegl Li-L--TNnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 116- 144: intkg Ll-Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 116- 144: intkg L--LlfTNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_BUCAP : 117- 144: ntkgl L--Lf-TNdGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 116- 144: vntcg Ll-Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 116- 144: vntcg L--LlfTTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_ECOLI : 117- 144: ntcgl L--Lf-TTdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 189- 217: intsg Ll-Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 189- 217: intsg L--LlfTTdGElanRLmhPsrevEREYsVrV fgqvd YCIL_HAEIN : 190- 217: ntsgl L--Lf-TTdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 108- 136: idttg Lv-Lm-TDdGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 108- 136: vdttg LvlL--TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 108- 136: vdttg Lv-Ll-TDdGQwshRItsPkhhcEKTYlVtL adpve YEJD_HAEIN : 110- 136: ttglv L--L--TDdGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 113- 141: kdsqg LifL--TNhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 108- 136: ydtsg LllL--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 108- 136: ydtsg Ll-Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 108- 136: ydtsg L--LllTNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 109- 136: dtsgl Ll-L--TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 109- 136: dtsgl L--Ll-TNdGEfanKLmhPkyeiDKTYvAkV kgipp YPUL_BACSU : 110- 136: tsgll L--L--TNdGEfanKLmhPkyeiDKTYvAkV kgipp M 13: 45.7136 8( 8) G-L-x(1,3)-T-x(0,2)-G-[DEQT]-x(3)-[KR]-[IL]-x(2)-[AP]-x(4)-[DE]-[KR]-[ET]-Y-x-[AIV]-x-[ILV] Occurences: 8(8) Y694_HAEIN : 96- 125: drdse GLlilTnnGElqhRLadPkfktEKTYwVqV egipe YCIL_BUCAP : 115- 144: dintk GLllfTndGTlanKLmhPrsqiEREYnIrI fgemn YCIL_ECOLI : 115- 144: dvntc GLllfTtdGElanRLmhPsrevEREYaVrV fgqvd YCIL_HAEIN : 188- 217: dints GLllfTtdGElanRLmhPsrevEREYsVrV fgqvd YEJD_ECOLI : 107- 136: didtt GLvlmTddGQwshRItsPrhhcEKTYlVtL espva YEJD_HAEIN : 107- 136: dvdtt GLvllTddGQwshRItsPkhhcEKTYlVtL adpve YJBC_ECOLI : 112- 141: dkdsq GLiflTnhGDlvnKIlrAgndhEKEYlVtV dkpit YPUL_BACSU : 107- 136: dydts GLlllTndGEfanKLmhPkyeiDKTYvAkV kgipp N 14: 37.7098 8( 8) G-R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T Occurences: 8(8) Y694_HAEIN : 88- 101: nvyaa GRLDrDSeGLliL--T nngel Y694_HAEIN : 88- 101: nvyaa GRLDrDSeGL--LilT nngel YCIL_BUCAP : 107- 120: rwvsv GRLDiNTkGLl-Lf-T ndgtl YCIL_BUCAP : 107- 120: rwvsv GRLDiNTkGL--LlfT ndgtl YCIL_ECOLI : 107- 120: rwiav GRLDvNTcGLl-Lf-T tdgel YCIL_ECOLI : 107- 120: rwiav GRLDvNTcGL--LlfT tdgel YCIL_HAEIN : 180- 193: rwiav GRLDiNTsGLl-Lf-T tdgel YCIL_HAEIN : 180- 193: rwiav GRLDiNTsGL--LlfT tdgel YEJD_ECOLI : 99- 112: klhaa GRLDiDTtGLv-Lm-T ddgqw YEJD_HAEIN : 99- 112: klhsa GRLDvDTtGLvlL--T ddgqw YEJD_HAEIN : 99- 112: klhsa GRLDvDTtGLv-Ll-T ddgqw YJBC_ECOLI : 104- 117: rvfpi GRLDkDSqGLifL--T nhgdl YPUL_BACSU : 99- 112: riypi GRLDyDTsGLllL--T ndgef YPUL_BACSU : 99- 112: riypi GRLDyDTsGLl-Ll-T ndgef YPUL_BACSU : 99- 112: riypi GRLDyDTsGL--LllT ndgef O 15: 33.5398 8( 8) R-L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T Occurences: 8(8) Y694_HAEIN : 89- 101: vyaag RLDrDSeGLliL--T nngel Y694_HAEIN : 89- 101: vyaag RLDrDSeGL--LilT nngel YCIL_BUCAP : 108- 120: wvsvg RLDiNTkGLl-Lf-T ndgtl YCIL_BUCAP : 108- 120: wvsvg RLDiNTkGL--LlfT ndgtl YCIL_ECOLI : 108- 120: wiavg RLDvNTcGLl-Lf-T tdgel YCIL_ECOLI : 108- 120: wiavg RLDvNTcGL--LlfT tdgel YCIL_HAEIN : 181- 193: wiavg RLDiNTsGLl-Lf-T tdgel YCIL_HAEIN : 181- 193: wiavg RLDiNTsGL--LlfT tdgel YEJD_ECOLI : 100- 112: lhaag RLDiDTtGLv-Lm-T ddgqw YEJD_HAEIN : 100- 112: lhsag RLDvDTtGLvlL--T ddgqw YEJD_HAEIN : 100- 112: lhsag RLDvDTtGLv-Ll-T ddgqw YJBC_ECOLI : 105- 117: vfpig RLDkDSqGLifL--T nhgdl YPUL_BACSU : 100- 112: iypig RLDyDTsGLllL--T ndgef YPUL_BACSU : 100- 112: iypig RLDyDTsGLl-Ll-T ndgef YPUL_BACSU : 100- 112: iypig RLDyDTsGL--LllT ndgef P 16: 29.3697 8( 8) L-D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T Occurences: 8(8) Y694_HAEIN : 90- 101: yaagr LDrDSeGLliL--T nngel Y694_HAEIN : 90- 101: yaagr LDrDSeGL--LilT nngel YCIL_BUCAP : 109- 120: vsvgr LDiNTkGLl-Lf-T ndgtl YCIL_BUCAP : 109- 120: vsvgr LDiNTkGL--LlfT ndgtl YCIL_ECOLI : 109- 120: iavgr LDvNTcGLl-Lf-T tdgel YCIL_ECOLI : 109- 120: iavgr LDvNTcGL--LlfT tdgel YCIL_HAEIN : 182- 193: iavgr LDiNTsGLl-Lf-T tdgel YCIL_HAEIN : 182- 193: iavgr LDiNTsGL--LlfT tdgel YEJD_ECOLI : 101- 112: haagr LDiDTtGLv-Lm-T ddgqw YEJD_HAEIN : 101- 112: hsagr LDvDTtGLvlL--T ddgqw YEJD_HAEIN : 101- 112: hsagr LDvDTtGLv-Ll-T ddgqw YJBC_ECOLI : 106- 117: fpigr LDkDSqGLifL--T nhgdl YPUL_BACSU : 101- 112: ypigr LDyDTsGLllL--T ndgef YPUL_BACSU : 101- 112: ypigr LDyDTsGLl-Ll-T ndgef YPUL_BACSU : 101- 112: ypigr LDyDTsGL--LllT ndgef Q 17: 25.6997 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,1)-T Occurences: 8(8) Y694_HAEIN : 91- 101: aagrl DrDSeGLliL-T nngel YCIL_BUCAP : 110- 120: svgrl DiNTkGLl-LfT ndgtl YCIL_ECOLI : 110- 120: avgrl DvNTcGLl-LfT tdgel YCIL_HAEIN : 183- 193: avgrl DiNTsGLl-LfT tdgel YEJD_ECOLI : 102- 112: aagrl DiDTtGLv-LmT ddgqw YEJD_HAEIN : 102- 112: sagrl DvDTtGLvlL-T ddgqw YEJD_HAEIN : 102- 112: sagrl DvDTtGLv-LlT ddgqw YJBC_ECOLI : 107- 117: pigrl DkDSqGLifL-T nhgdl YPUL_BACSU : 102- 112: pigrl DyDTsGLllL-T ndgef YPUL_BACSU : 102- 112: pigrl DyDTsGLl-LlT ndgef R 18: 25.1997 8( 8) D-x-[DN]-[ST]-x-G-L-x(0,2)-L-x(0,2)-T Occurences: 8(8) Y694_HAEIN : 91- 101: aagrl DrDSeGLliL--T nngel Y694_HAEIN : 91- 101: aagrl DrDSeGL--LilT nngel YCIL_BUCAP : 110- 120: svgrl DiNTkGLl-Lf-T ndgtl YCIL_BUCAP : 110- 120: svgrl DiNTkGL--LlfT ndgtl YCIL_ECOLI : 110- 120: avgrl DvNTcGLl-Lf-T tdgel YCIL_ECOLI : 110- 120: avgrl DvNTcGL--LlfT tdgel YCIL_HAEIN : 183- 193: avgrl DiNTsGLl-Lf-T tdgel YCIL_HAEIN : 183- 193: avgrl DiNTsGL--LlfT tdgel YEJD_ECOLI : 102- 112: aagrl DiDTtGLv-Lm-T ddgqw YEJD_HAEIN : 102- 112: sagrl DvDTtGLvlL--T ddgqw YEJD_HAEIN : 102- 112: sagrl DvDTtGLv-Ll-T ddgqw YJBC_ECOLI : 107- 117: pigrl DkDSqGLifL--T nhgdl YPUL_BACSU : 102- 112: pigrl DyDTsGLllL--T ndgef YPUL_BACSU : 102- 112: pigrl DyDTsGLl-Ll-T ndgef YPUL_BACSU : 102- 112: pigrl DyDTsGL--LllT ndgef S 19: 23.7648 13( 8) D-x(2,4)-G-L-x(0,2)-L-x-[NT]-x-[DG]-[DEG] Occurences: 13(8) Y694_HAEIN : 91- 105: aagrl DrdseGLliLtNnGE lqhrl Y694_HAEIN : 93- 105: grldr Dse--GLliLtNnGE lqhrl YCIL_BUCAP : 110- 123: svgrl DintkGLl-LfTnDG tlank YCIL_ECOLI : 110- 123: avgrl DvntcGLl-LfTtDG elanr YCIL_HAEIN : 183- 196: avgrl DintsGLl-LfTtDG elanr YEJD_ECOLI : 102- 115: aagrl DidttGLv-LmTdDG qwshr YEJD_ECOLI : 104- 115: grldi Dtt--GLv-LmTdDG qwshr YEJD_HAEIN : 102- 115: sagrl DvdttGLv-LlTdDG qwshr YEJD_HAEIN : 104- 115: grldv Dtt--GLv-LlTdDG qwshr YJBC_ECOLI : 107- 121: pigrl DkdsqGLifLtNhGD lvnki YJBC_ECOLI : 109- 121: grldk Dsq--GLifLtNhGD lvnki YPUL_BACSU : 102- 115: pigrl DydtsGLl-LlTnDG efank YPUL_BACSU : 102- 116: pigrl DydtsGLllLtNdGE fankl YPUL_BACSU : 104- 115: grldy Dts--GLl-LlTnDG efank YPUL_BACSU : 104- 116: grldy Dts--GLllLtNdGE fankl T 20: 22.4698 8( 8) G-[IL]-[LPV]-x(2)-T-x(0,1)-D-x-[AEGQT]-x(2)-[NRS] Occurences: 8(8) Y694_HAEIN : 127- 138: wvqve GIPeeT-DlAqlR kgvel YCIL_BUCAP : 115- 127: dintk GLLlfTnDgTlaN klmhp YCIL_ECOLI : 115- 127: dvntc GLLlfTtDgElaN rlmhp YCIL_HAEIN : 188- 200: dints GLLlfTtDgElaN rlmhp YEJD_ECOLI : 107- 118: didtt GLVlmT-DdGqwS hrits YEJD_HAEIN : 107- 118: dvdtt GLVllT-DdGqwS hrits YJBC_ECOLI : 77- 89: lnkpv GIVstTeDgErdN ivdfv YPUL_BACSU : 107- 119: dydts GLLllTnDgEfaN klmhp Number of patterns evaluated by Pratt:2866 Total running time: 2 seconds