------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file YBR002C PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename YBR002C.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: Y065_MYCLE 296 Y920_HAEIN 239 YARF_CORGL 234 YBL2_YEAST 286 YT14_STRFR 259 Pratt run started at Thu Feb 6 21:35:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 57.3807 6( 5) H-x(0,1)-L-x(5)-P-x(2)-D-L-x(2)-R-T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(3)-A 2: 53.2107 5( 5) P-x(2)-D-L-x(2)-R-T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 3: 49.0406 5( 5) D-L-x(2)-R-T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 4: 48.5406 7( 5) P-x(0,1)-D-x(0,2)-L-x(2)-R-T-S-G-x(2)-R-x-S-x-F-x(2)-W-Q 5: 44.8706 5( 5) L-x(2)-R-T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 6: 44.8706 5( 5) D-x(1,2)-L-x(1,2)-R-T-S-G-x(2)-R-x-S-x-F-x(2)-W-Q 7: 40.7005 5( 5) R-T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 8: 36.5305 5( 5) T-S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 9: 32.3604 5( 5) S-G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 10: 28.1904 5( 5) G-x(2)-R-x-S-x-F-x(0,1)-L-x(0,1)-W-Q 11: 24.0203 5( 5) S-x-E-N-x(2)-R-x(2,4)-E-x(3)-L 12: 23.5203 6( 5) S-x(0,1)-E-N-x(2)-R-x(2,4)-E-x(3)-L 13: 23.0203 5( 5) S-x-E-N-x(2)-R-x(2,4)-E-x(1,3)-L 14: 19.8503 5( 5) S-x-F-x(0,1)-L-x(0,1)-W-Q 15: 19.8503 5( 5) R-x(0,1)-S-x-F-x(0,1)-L-x(3)-A 16: 19.8503 5( 5) E-N-x(2)-R-x(2,4)-E-x(3)-L 17: 19.8503 6( 5) G-x(2)-R-x(0,1)-S-x(4)-W-x(1,2)-A 18: 19.8503 6( 5) R-x(1,2)-G-x(2)-R-x(0,1)-S-x(4)-W 19: 19.8503 5( 5) D-G-N-x(0,1)-R-x(1,2)-A 20: 19.8503 5( 5) M-x(0,1)-D-G-N-x(0,1)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 94.7881 6( 5) H-x(0,1)-L-x(3)-[DGN]-x-P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(3)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] B 2: 80.3604 5( 5) P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] C 3: 76.7552 7( 5) P-x(0,1)-D-x(0,2)-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] D 4: 73.4575 6( 5) H-x(0,1)-L-x(3)-[DGN]-x-P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L E 5: 70.4016 5( 5) D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] F 6: 67.2104 5( 5) D-x(1,2)-L-x(1,2)-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] G 7: 66.6116 5( 5) P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W H 8: 66.2316 5( 5) L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] I 9: 56.6528 5( 5) D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W J 10: 56.1868 5( 5) R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] K 11: 53.9420 5( 5) G-x-[QS]-R-x(0,1)-S-[DGN]-F-[LM]-[IL]-W-x(1,2)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] L 12: 52.4828 5( 5) L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W M 13: 52.0168 5( 5) T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] N 14: 50.5302 5( 5) R-x(1,2)-G-x-[QS]-R-x(0,1)-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] O 15: 47.8467 5( 5) S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] P 16: 43.6767 5( 5) G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Q 17: 42.4380 5( 5) R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W R 18: 39.6866 5( 5) R-x(0,1)-S-[DGN]-F-x(0,1)-L-x(3)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] S 19: 38.2680 5( 5) T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W T 20: 36.3877 5( 5) S-x-E-N-x(2)-R-x(2,4)-E-[ILV]-[EQRS]-x-L-[FM]-[DGQST]-[FILV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 94.7881 6( 5) H-x(0,1)-L-x(3)-[DGN]-x-P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(3)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] Occurences: 6(5) Y065_MYCLE : 230- 278: stitr H-LqrpDiPDVDLFVRTSGeQRsSNFmLwqaAyTEyifqDklwPdYdrrD lwaac Y920_HAEIN : 171- 220: nstfq HhLatqNaPPVDLLIRTSGeQRiSNFlLwqiAyAElyfsDvlwPdFnqlE fnrai Y920_HAEIN : 172- 220: stfqh H-LatqNaPPVDLLIRTSGeQRiSNFlLwqiAyAElyfsDvlwPdFnqlE fnrai YARF_CORGL : 160- 208: daist H-LytsGqPDPDLVIRTSGeQRlSGFmLwqsAySEiwftDtywPaFrpsT ssapf YBL2_YEAST : 193- 240: stles H-LytaGvPPLDLLIRTSGvSRlSDF-LiwqAsSKgvriElldClWpefG pirma YT14_STRFR : 194- 242: dditr H-LytaGqPDPDLVIRTSGeQRmSNFlLwqsAySElyfcEaywPaFreiD flral B 2: 80.3604 5( 5) P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 237- 266: qrpdi PDVDLFVRTSGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 179- 208: atqna PPVDLLIRTSGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 179- 208: atqna PPVDLLIRTSGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 167- 196: ytsgq PDPDLVIRTSGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 200- 229: ytagv PPLDLLIRTSGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 201- 230: ytagq PDPDLVIRTSGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 201- 230: ytagq PDPDLVIRTSGeQRmSNF-LlWQsAysElyF ceayw C 3: 76.7552 7( 5) P-x(0,1)-D-x(0,2)-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 7(5) Y065_MYCLE : 237- 266: qrpdi P-DvdLFVRTSGeQRsSNFMLWQaAytEyiF qdklw Y920_HAEIN : 180- 208: tqnap PvD--LLIRTSGeQRiSNFLLWQiAyaElyF sdvlw YARF_CORGL : 167- 196: ytsgq P-DpdLVIRTSGeQRlSGFMLWQsAysEiwF tdtyw YARF_CORGL : 169- 196: sgqpd P-D--LVIRTSGeQRlSGFMLWQsAysEiwF tdtyw YBL2_YEAST : 201- 229: tagvp PlD--LLIRTSGvSRlSDFLIWQaSskGvrI elldc YT14_STRFR : 201- 230: ytagq P-DpdLVIRTSGeQRmSNFLLWQsAysElyF ceayw YT14_STRFR : 203- 230: agqpd P-D--LVIRTSGeQRmSNFLLWQsAysElyF ceayw D 4: 73.4575 6( 5) H-x(0,1)-L-x(3)-[DGN]-x-P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L Occurences: 6(5) Y065_MYCLE : 230- 256: stitr H-LqrpDiPDVDLFVRTSGeQRsSNFmL wqaay Y920_HAEIN : 171- 198: nstfq HhLatqNaPPVDLLIRTSGeQRiSNFlL wqiay Y920_HAEIN : 172- 198: stfqh H-LatqNaPPVDLLIRTSGeQRiSNFlL wqiay YARF_CORGL : 160- 186: daist H-LytsGqPDPDLVIRTSGeQRlSGFmL wqsay YBL2_YEAST : 193- 218: stles H-LytaGvPPLDLLIRTSGvSRlSDF-L iwqas YT14_STRFR : 194- 220: dditr H-LytaGqPDPDLVIRTSGeQRmSNFlL wqsay E 5: 70.4016 5( 5) D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 240- 266: dipdv DLFVRTSGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 182- 208: nappv DLLIRTSGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 182- 208: nappv DLLIRTSGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 170- 196: gqpdp DLVIRTSGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 203- 229: gvppl DLLIRTSGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 204- 230: gqpdp DLVIRTSGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 204- 230: gqpdp DLVIRTSGeQRmSNF-LlWQsAysElyF ceayw F 6: 67.2104 5( 5) D-x(1,2)-L-x(1,2)-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 238- 266: rpdip DvdLfvRTSGeQRsSNFMLWQaAytEyiF qdklw Y920_HAEIN : 182- 208: nappv Dl-Li-RTSGeQRiSNFLLWQiAyaElyF sdvlw YARF_CORGL : 168- 196: tsgqp DpdLviRTSGeQRlSGFMLWQsAysEiwF tdtyw YBL2_YEAST : 203- 229: gvppl Dl-Li-RTSGvSRlSDFLIWQaSskGvrI elldc YT14_STRFR : 202- 230: tagqp DpdLviRTSGeQRmSNFLLWQsAysElyF ceayw G 7: 66.6116 5( 5) P-[DP]-[LPV]-D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W Occurences: 5(5) Y065_MYCLE : 237- 257: qrpdi PDVDLFVRTSGeQRsSNFmL-W qaayt Y920_HAEIN : 179- 199: atqna PPVDLLIRTSGeQRiSNFlL-W qiaya Y920_HAEIN : 179- 199: atqna PPVDLLIRTSGeQRiSNF-LlW qiaya YARF_CORGL : 167- 187: ytsgq PDPDLVIRTSGeQRlSGFmL-W qsays YBL2_YEAST : 200- 220: ytagv PPLDLLIRTSGvSRlSDF-LiW qassk YT14_STRFR : 201- 221: ytagq PDPDLVIRTSGeQRmSNFlL-W qsays YT14_STRFR : 201- 221: ytagq PDPDLVIRTSGeQRmSNF-LlW qsays H 8: 66.2316 5( 5) L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 241- 266: ipdvd LFVRTSGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 183- 208: appvd LLIRTSGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 183- 208: appvd LLIRTSGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 171- 196: qpdpd LVIRTSGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 204- 229: vppld LLIRTSGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 205- 230: qpdpd LVIRTSGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 205- 230: qpdpd LVIRTSGeQRmSNF-LlWQsAysElyF ceayw I 9: 56.6528 5( 5) D-L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W Occurences: 5(5) Y065_MYCLE : 240- 257: dipdv DLFVRTSGeQRsSNFmL-W qaayt Y920_HAEIN : 182- 199: nappv DLLIRTSGeQRiSNFlL-W qiaya Y920_HAEIN : 182- 199: nappv DLLIRTSGeQRiSNF-LlW qiaya YARF_CORGL : 170- 187: gqpdp DLVIRTSGeQRlSGFmL-W qsays YBL2_YEAST : 203- 220: gvppl DLLIRTSGvSRlSDF-LiW qassk YT14_STRFR : 204- 221: gqpdp DLVIRTSGeQRmSNFlL-W qsays YT14_STRFR : 204- 221: gqpdp DLVIRTSGeQRmSNF-LlW qsays J 10: 56.1868 5( 5) R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 244- 266: vdlfv RTSGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 186- 208: vdlli RTSGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 186- 208: vdlli RTSGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 174- 196: pdlvi RTSGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 207- 229: ldlli RTSGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 208- 230: pdlvi RTSGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 208- 230: pdlvi RTSGeQRmSNF-LlWQsAysElyF ceayw K 11: 53.9420 5( 5) G-x-[QS]-R-x(0,1)-S-[DGN]-F-[LM]-[IL]-W-x(1,2)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] Occurences: 5(5) Y065_MYCLE : 247- 278: fvrts GeQRsSNFMLWqaAyTEyifqDklwPdYdrrD lwaac Y920_HAEIN : 189- 220: lirts GeQRiSNFLLWqiAyAElyfsDvlwPdFnqlE fnrai YARF_CORGL : 177- 208: virts GeQRlSGFMLWqsAySEiwftDtywPaFrpsT ssapf YBL2_YEAST : 210- 240: lirts GvSRlSDFLIWq-AsSKgvriElldClWpefG pirma YT14_STRFR : 211- 242: virts GeQRmSNFLLWqsAySElyfcEaywPaFreiD flral L 12: 52.4828 5( 5) L-[FLV]-[IV]-R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W Occurences: 5(5) Y065_MYCLE : 241- 257: ipdvd LFVRTSGeQRsSNFmL-W qaayt Y920_HAEIN : 183- 199: appvd LLIRTSGeQRiSNFlL-W qiaya Y920_HAEIN : 183- 199: appvd LLIRTSGeQRiSNF-LlW qiaya YARF_CORGL : 171- 187: qpdpd LVIRTSGeQRlSGFmL-W qsays YBL2_YEAST : 204- 220: vppld LLIRTSGvSRlSDF-LiW qassk YT14_STRFR : 205- 221: qpdpd LVIRTSGeQRmSNFlL-W qsays YT14_STRFR : 205- 221: qpdpd LVIRTSGeQRmSNF-LlW qsays M 13: 52.0168 5( 5) T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 245- 266: dlfvr TSGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 187- 208: dllir TSGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 187- 208: dllir TSGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 175- 196: dlvir TSGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 208- 229: dllir TSGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 209- 230: dlvir TSGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 209- 230: dlvir TSGeQRmSNF-LlWQsAysElyF ceayw N 14: 50.5302 5( 5) R-x(1,2)-G-x-[QS]-R-x(0,1)-S-[DGN]-F-[LM]-[IL]-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 244- 266: vdlfv RtsGeQRsSNFMLWQaAytEyiF qdklw Y920_HAEIN : 186- 208: vdlli RtsGeQRiSNFLLWQiAyaElyF sdvlw YARF_CORGL : 174- 196: pdlvi RtsGeQRlSGFMLWQsAysEiwF tdtyw YBL2_YEAST : 207- 229: ldlli RtsGvSRlSDFLIWQaSskGvrI elldc YT14_STRFR : 208- 230: pdlvi RtsGeQRmSNFLLWQsAysElyF ceayw O 15: 47.8467 5( 5) S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 246- 266: lfvrt SGeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 188- 208: llirt SGeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 188- 208: llirt SGeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 176- 196: lvirt SGeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 209- 229: llirt SGvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 210- 230: lvirt SGeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 210- 230: lvirt SGeQRmSNF-LlWQsAysElyF ceayw P 16: 43.6767 5( 5) G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W-Q-x-[AS]-x(2)-[EG]-x(2)-[FI] Occurences: 5(5) Y065_MYCLE : 247- 266: fvrts GeQRsSNFmL-WQaAytEyiF qdklw Y920_HAEIN : 189- 208: lirts GeQRiSNFlL-WQiAyaElyF sdvlw Y920_HAEIN : 189- 208: lirts GeQRiSNF-LlWQiAyaElyF sdvlw YARF_CORGL : 177- 196: virts GeQRlSGFmL-WQsAysEiwF tdtyw YBL2_YEAST : 210- 229: lirts GvSRlSDF-LiWQaSskGvrI elldc YT14_STRFR : 211- 230: virts GeQRmSNFlL-WQsAysElyF ceayw YT14_STRFR : 211- 230: virts GeQRmSNF-LlWQsAysElyF ceayw Q 17: 42.4380 5( 5) R-T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W Occurences: 5(5) Y065_MYCLE : 244- 257: vdlfv RTSGeQRsSNFmL-W qaayt Y920_HAEIN : 186- 199: vdlli RTSGeQRiSNFlL-W qiaya Y920_HAEIN : 186- 199: vdlli RTSGeQRiSNF-LlW qiaya YARF_CORGL : 174- 187: pdlvi RTSGeQRlSGFmL-W qsays YBL2_YEAST : 207- 220: ldlli RTSGvSRlSDF-LiW qassk YT14_STRFR : 208- 221: pdlvi RTSGeQRmSNFlL-W qsays YT14_STRFR : 208- 221: pdlvi RTSGeQRmSNF-LlW qsays R 18: 39.6866 5( 5) R-x(0,1)-S-[DGN]-F-x(0,1)-L-x(3)-A-x-[AST]-[EK]-x(4)-[DE]-x(3)-[CP]-x-[FWY]-x(3)-[DEGT] Occurences: 5(5) Y065_MYCLE : 250- 278: tsgeq RsSNFmLwqaAyTEyifqDklwPdYdrrD lwaac Y920_HAEIN : 192- 220: tsgeq RiSNFlLwqiAyAElyfsDvlwPdFnqlE fnrai YARF_CORGL : 180- 208: tsgeq RlSGFmLwqsAySEiwftDtywPaFrpsT ssapf YBL2_YEAST : 213- 240: tsgvs RlSDF-LiwqAsSKgvriElldClWpefG pirma YT14_STRFR : 214- 242: tsgeq RmSNFlLwqsAySElyfcEaywPaFreiD flral S 19: 38.2680 5( 5) T-S-G-x-[QS]-R-x-S-[DGN]-F-x(0,1)-L-x(0,1)-W Occurences: 5(5) Y065_MYCLE : 245- 257: dlfvr TSGeQRsSNFmL-W qaayt Y920_HAEIN : 187- 199: dllir TSGeQRiSNFlL-W qiaya Y920_HAEIN : 187- 199: dllir TSGeQRiSNF-LlW qiaya YARF_CORGL : 175- 187: dlvir TSGeQRlSGFmL-W qsays YBL2_YEAST : 208- 220: dllir TSGvSRlSDF-LiW qassk YT14_STRFR : 209- 221: dlvir TSGeQRmSNFlL-W qsays YT14_STRFR : 209- 221: dlvir TSGeQRmSNF-LlW qsays T 20: 36.3877 5( 5) S-x-E-N-x(2)-R-x(2,4)-E-[ILV]-[EQRS]-x-L-[FM]-[DGQST]-[FILV] Occurences: 5(5) Y065_MYCLE : 121- 138: slyaf StENwkRsve-EVRfLMGF nrdvv Y920_HAEIN : 63- 80: tlyaf SsENwsRpeq-EISaLMSL fmqal YARF_CORGL : 50- 67: dvyll SmENlgRsse-ELQlLFDI advad YBL2_YEAST : 85- 102: tvfaf SiENfkRssr-EVEsLMTL areri YT14_STRFR : 79- 97: tvfvc StENlqRrgdtEVSfLMQV ieqvv Number of patterns evaluated by Pratt:4516 Total running time: 2 seconds