------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file YBL055C_3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename YBL055C_3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: YABD_BACSU 255 YBF5_YEAST 418 YCFH_ECOLI 104 YCFH_HAEIN 260 YG64_HAEIN 251 YIGW_ECOLI 264 YJJV_ECOLI 259 YJJV_HAEIN 262 YMES_BACST 49 Pratt run started at Thu Feb 6 21:35:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 13( 9) D-x(3,5)-E-x(0,1)-L 2: 11.0102 13( 9) L-x(1,3)-D-x(3,4)-L 3: 10.5102 13( 9) A-x(0,2)-A-x(0,2)-G 4: 10.5102 11( 9) E-x(0,2)-R-x(2,4)-E 5: 10.5102 15( 9) E-x(2,4)-R-x(0,2)-A 6: 10.5102 14( 9) E-x(2,4)-L-x(0,2)-E 7: 10.5102 11( 9) V-x(0,2)-E-x(2,4)-L 8: 8.3401 24( 9) A-x(2)-L 9: 8.3401 22( 9) A-E 10: 8.3401 22( 9) E-R 11: 8.3401 17( 9) E-x(5)-A 12: 8.3401 19( 9) D-L 13: 8.3401 21( 9) E-x-L 14: 8.3401 14( 9) E-x-D 15: 8.3401 12( 9) A-V 16: 8.3401 16( 9) L-x-A 17: 8.3401 10( 9) A-x(5)-Q 18: 8.3401 28( 9) D-x(4)-L 19: 7.8401 33( 9) E-x(0,1)-L 20: 7.8401 32( 9) A-x(1,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.5238 11( 9) E-x(5)-A-x(4)-[LV] B 2: 11.0102 13( 9) D-x(3,5)-E-x(0,1)-L C 3: 11.0102 13( 9) L-x(1,3)-D-x(3,4)-L D 4: 10.9337 11( 9) E-x-L-x(4)-[DEQ] E 5: 10.5808 16( 9) D-x(4)-L-[ADEN] F 6: 10.5793 10( 9) D-L-x(3)-[AILV] G 7: 10.5102 13( 9) A-x(0,2)-A-x(0,2)-G H 8: 10.5102 11( 9) E-x(0,2)-R-x(2,4)-E I 9: 10.5102 15( 9) E-x(2,4)-R-x(0,2)-A J 10: 10.5102 14( 9) E-x(2,4)-L-x(0,2)-E K 11: 10.5102 11( 9) V-x(0,2)-E-x(2,4)-L L 12: 10.4337 12( 9) E-x(0,1)-L-x(4)-[DEQ] M 13: 10.2558 13( 9) E-R-x(2)-[AILPV] N 14: 9.7489 19( 9) A-x(1,2)-E-[AGILV] O 15: 8.3401 24( 9) A-x(2)-L P 16: 8.3401 22( 9) A-E Q 17: 8.3401 14( 9) E-x-D R 18: 8.3401 12( 9) A-V S 19: 8.3401 16( 9) L-x-A T 20: 8.3401 10( 9) A-x(5)-Q Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.5238 11( 9) E-x(5)-A-x(4)-[LV] Occurences: 11(9) YABD_BACSU : 19- 30: ydtdl EevierAkaekV erivv YBF5_YEAST : 332- 343: dapwc EikrthAsfqyL akyqe YCFH_ECOLI : 78- 89: dpydv EdlrrlAaeegV valge YCFH_HAEIN : 79- 90: epyda ErllrlAqdpkV iaige YCFH_HAEIN : 227- 238: paytr EvceyvAtlkgV saeaf YG64_HAEIN : 114- 125: yiell ErfiliAkkwdL plnlh YIGW_ECOLI : 79- 90: qaate EaiielAaqpeV vaige YJJV_ECOLI : 22- 33: fsgde EaslqrAaqagV gkiiv YJJV_HAEIN : 98- 109: ctava EiglerAipdlL tdelw YJJV_HAEIN : 122- 133: qchff EsqlylAkqfnL pvnih YMES_BACST : 19- 30: yeedl EqvierAraegV shivv B 2: 11.0102 13( 9) D-x(3,5)-E-x(0,1)-L Occurences: 13(9) YABD_BACSU : 69- 75: pvdai Dmte--EdL awike YABD_BACSU : 74- 81: dmtee DlawikE-L sahek YBF5_YEAST : 140- 147: dnpsm Deayn-EsL yakvi YBF5_YEAST : 367- 374: knkla DklnaeE-L ymvkg YBF5_YEAST : 367- 374: knkla Dklna-EeL ymvkg YCFH_ECOLI : 11- 18: shchl Dgldy-EsL hkdvd YCFH_ECOLI : 73- 80: plnqn Dpydv-EdL rrlaa YCFH_HAEIN : 11- 18: shchl Daldy-EnL hknis YG64_HAEIN : 105- 112: enpnl DyvpyiE-L lerfi YG64_HAEIN : 105- 113: enpnl DyvpyiElL erfil YG64_HAEIN : 135- 142: hivhn DveialE-L lqkhn YG64_HAEIN : 135- 143: hivhn DveialElL qkhni YIGW_ECOLI : 183- 190: tgwvc DerrglE-L rellp YJJV_ECOLI : 75- 81: lekhs Dvsl--EqL qqale YJJV_HAEIN : 107- 113: eraip Dlltd-E-L wakqc YMES_BACST : 44- 49: drpti Drai--E-L C 3: 11.0102 13( 9) L-x(1,3)-D-x(3,4)-L Occurences: 13(9) YABD_BACSU : 2- 9: m Lf--DthahL naeqy YABD_BACSU : 199- 207: pndrl LietDcpf-L tphpf YBF5_YEAST : 36- 45: atdsp LkyyDiglnL tdpmf YCFH_ECOLI : 3- 10: mf Lv--DshchL dgldy YCFH_ECOLI : 10- 18: dshch LdglDyes-L hkdvd YCFH_ECOLI : 18- 26: ldyes Lhk-DvddvL akaaa YCFH_HAEIN : 10- 18: dshch LdalDyen-L hknis YCFH_HAEIN : 202- 210: pmerl LvetDspy-L apvpy YG64_HAEIN : 2- 9: m Lf--DshlhL dqlsd YIGW_ECOLI : 203- 211: paekl LietDapy-L lprdl YIGW_ECOLI : 203- 212: paekl LietDapylL prdlt YJJV_ECOLI : 115- 122: erqqw Ll--DeqlkL akryd YJJV_HAEIN : 202- 209: qaiak Lpl-Dalv-L etdsp YMES_BACST : 2- 9: m Lf--DthahL navqy D 4: 10.9337 11( 9) E-x-L-x(4)-[DEQ] Occurences: 11(9) YABD_BACSU : 73- 80: idmte EdLawikE lsahe YBF5_YEAST : 309- 316: slrte EnLavvkQ ipter YBF5_YEAST : 320- 327: kqipt ErLlletD apwce YCFH_ECOLI : 16- 23: dgldy EsLhkdvD dvlak YCFH_HAEIN : 79- 86: epyda ErLlrlaQ dpkvi YCFH_HAEIN : 199- 206: ryvpm ErLlvetD spyla YG64_HAEIN : 217- 224: ragis EqLlavlQ klael YIGW_ECOLI : 200- 207: plipa EkLlietD apyll YJJV_ECOLI : 79- 86: sdvsl EqLqqalE rrpak YJJV_HAEIN : 19- 26: qqftg EpLsqliD nakqa YMES_BACST : 16- 23: avqye EdLeqviE rarae E 5: 10.5808 16( 9) D-x(4)-L-[ADEN] Occurences: 16(9) YABD_BACSU : 4- 10: mlf DthahLN aeqyd YBF5_YEAST : 63- 69: qyhpa DyvklLE raaqr YBF5_YEAST : 233- 239: rsacd DfvqiLE rfiag YBF5_YEAST : 285- 291: tgsai DlqklLN lspni YCFH_ECOLI : 5- 11: mflv DshchLD gldye YCFH_ECOLI : 21- 27: eslhk DvddvLA kaaar YCFH_ECOLI : 33- 39: kaaar DvkfcLA vattl YCFH_HAEIN : 5- 11: mfiv DshchLD aldye YCFH_HAEIN : 33- 39: kahar DvkhlLA igvtl YCFH_HAEIN : 119- 125: fgsqi DianqLD kpvii YG64_HAEIN : 4- 10: mlf DshlhLD qlsde YG64_HAEIN : 135- 141: hivhn DveiaLE llqkh YIGW_ECOLI : 183- 189: tgwvc DerrgLE lrell YJJV_ECOLI : 117- 123: qqwll DeqlkLA krydl YJJV_HAEIN : 5- 11: mhff DththLN ylqqf YMES_BACST : 4- 10: mlf DthahLN avqye F 6: 10.5793 10( 9) D-L-x(3)-[AILV] Occurences: 10(9) YABD_BACSU : 17- 22: eqydt DLeevI eraka YBF5_YEAST : 285- 290: tgsai DLqklL nlspn YBF5_YEAST : 400- 405: evkdv DLatlI dttwk YCFH_ECOLI : 79- 84: pydve DLrrlA aeegv YCFH_HAEIN : 170- 175: xkkal DLgfyI scsgi YG64_HAEIN : 124- 129: iakkw DLplnL hivhn YIGW_ECOLI : 123- 128: lriaa DLnmpV fmhcr YJJV_ECOLI : 127- 132: lakry DLpviL hsrrt YJJV_HAEIN : 176- 181: akrfv DLgykI gvggt YMES_BACST : 17- 22: vqyee DLeqvI erara G 7: 10.5102 13( 9) A-x(0,2)-A-x(0,2)-G Occurences: 13(9) YABD_BACSU : 58- 61: ydfiy A--Ai-G whpvd YABD_BACSU : 145- 149: lkeeg Ae-Av-G gimhc YABD_BACSU : 145- 150: lkeeg Ae-AvgG imhcf YBF5_YEAST : 122- 127: cvnef Ad-AsqG dkasa YCFH_ECOLI : 84- 88: dlrrl A--AeeG vvalg YCFH_HAEIN : 109- 115: adnka AqqAvfG sqidi YG64_HAEIN : 56- 58: kklyi A--A--G fhpeq YIGW_ECOLI : 28- 32: dvvac AfdA--G vngll YIGW_ECOLI : 167- 172: reemq AcvAh-G iyigi YJJV_ECOLI : 28- 32: aslqr AaqA--G vgkii YJJV_ECOLI : 28- 32: aslqr A--AqaG vgkii YJJV_ECOLI : 28- 34: aslqr AaqAgvG kiivp YJJV_ECOLI : 29- 32: slqra Aq-A--G vgkii YJJV_ECOLI : 29- 34: slqra Aq-AgvG kiivp YJJV_ECOLI : 61- 64: yqply A--Al-G lhpgm YJJV_HAEIN : 95- 100: dtnct Av-AeiG lerai YMES_BACST : 25- 29: qvier Ar-Ae-G vshiv H 8: 10.5102 11( 9) E-x(0,2)-R-x(2,4)-E Occurences: 11(9) YABD_BACSU : 23- 28: leevi E--Raka-E kveri YBF5_YEAST : 320- 325: kqipt E--Rlll-E tdapw YBF5_YEAST : 348- 353: lakyq Ev-Rdf--E ypafk YCFH_ECOLI : 78- 86: dpydv EdlRrlaaE egvva YCFH_HAEIN : 191- 199: aeair EviRyvpmE rllve YCFH_HAEIN : 199- 204: ryvpm E--Rllv-E tdspy YG64_HAEIN : 211- 217: qhegf E--RagisE qllav YIGW_ECOLI : 184- 189: gwvcd Er-Rgl--E lrell YIGW_ECOLI : 184- 189: gwvcd E--Rrgl-E lrell YJJV_ECOLI : 235- 243: favlc ElrRepadE iaqal YJJV_HAEIN : 229- 233: qpnrp E--Riv--E sfkal YMES_BACST : 23- 28: leqvi E--Rara-E gvshi I 9: 10.5102 15( 9) E-x(2,4)-R-x(0,2)-A Occurences: 15(9) YABD_BACSU : 19- 25: ydtdl EevieR--A kaekv YABD_BACSU : 19- 27: ydtdl EevieRakA ekver YABD_BACSU : 20- 25: dtdle Evie-R--A kaekv YABD_BACSU : 20- 27: dtdle Evie-RakA ekver YBF5_YEAST : 332- 338: dapwc Eik--RthA sfqyl YCFH_ECOLI : 78- 84: dpydv Edlr-Rl-A aeegv YCFH_ECOLI : 78- 84: dpydv Edl--RrlA aeegv YCFH_ECOLI : 78- 85: dpydv Edlr-RlaA eegvv YCFH_HAEIN : 79- 85: epyda Erll-Rl-A qdpkv YG64_HAEIN : 208- 213: spwqh Egfe-R--A giseq YIGW_ECOLI : 108- 113: nfstp Eeqe-R--A fvaql YIGW_ECOLI : 109- 113: fstpe Eqe--R--A fvaql YJJV_ECOLI : 22- 28: fsgde EaslqR--A aqagv YJJV_ECOLI : 22- 29: fsgde EaslqRa-A qagvg YJJV_ECOLI : 44- 51: patea Enfa-RvlA laeny YJJV_ECOLI : 224- 231: qpnrp Eqaa-RvfA vlcel YJJV_ECOLI : 235- 241: favlc Elr--RepA deiaq YJJV_HAEIN : 98- 104: ctava EigleR--A ipdll YMES_BACST : 19- 25: yeedl EqvieR--A raegv YMES_BACST : 19- 27: yeedl EqvieRarA egvsh YMES_BACST : 23- 27: leqvi Era--R--A egvsh J 10: 10.5102 14( 9) E-x(2,4)-L-x(0,2)-E Occurences: 14(9) YABD_BACSU : 227- 234: vkyva EqiaeLk-E mtfee YBF5_YEAST : 320- 325: kqipt Erll-L--E tdapw YBF5_YEAST : 320- 325: kqipt Erl--Ll-E tdapw YCFH_ECOLI : 78- 86: dpydv EdlrrLaaE egvva YCFH_ECOLI : 87- 94: rlaae EgvvaLg-E tgqdy YCFH_HAEIN : 199- 204: ryvpm Erl--Lv-E tdspy YG64_HAEIN : 137- 141: vhndv Eia--L--E llqkh YIGW_ECOLI : 137- 144: crdah ErfmtLl-E pwldk YIGW_ECOLI : 184- 189: gwvcd Errg-L--E lrell YIGW_ECOLI : 200- 205: plipa Ekl--Li-E tdapy YJJV_ECOLI : 110- 118: ddpqf ErqqwLldE qlkla YJJV_HAEIN : 76- 83: iqeha EndliLl-E qalkn YJJV_HAEIN : 98- 102: ctava Eig--L--E raipd YJJV_HAEIN : 247- 255: rnepa ElikkLtwE nacqi YMES_BACST : 15- 19: navqy Eed--L--E qvier K 11: 10.5102 11( 9) V-x(0,2)-E-x(2,4)-L Occurences: 11(9) YABD_BACSU : 225- 232: syvky Va-EqiaeL kemtf YBF5_YEAST : 203- 209: kemqk VffEeq--L kiscl YCFH_ECOLI : 77- 83: ndpyd V--EdlrrL aaeeg YCFH_HAEIN : 196- 202: eviry VpmErl--L vetds YCFH_HAEIN : 228- 235: aytre Vc-EyvatL kgvsa YG64_HAEIN : 136- 140: ivhnd V--Eia--L ellqk YG64_HAEIN : 136- 142: ivhnd V--EialeL lqkhn YIGW_ECOLI : 181- 188: gitgw VcdErrg-L elrel YJJV_ECOLI : 95- 100: akvva Vg-Eig--L dlfgd YJJV_ECOLI : 95- 102: akvva Vg-EigldL fgddp YJJV_HAEIN : 96- 101: tncta Va-Eig--L eraip YJJV_HAEIN : 232- 238: rperi V--EsfkaL ctlrn YMES_BACST : 12- 18: ahlna VqyEed--L eqvie L 12: 10.4337 12( 9) E-x(0,1)-L-x(4)-[DEQ] Occurences: 12(9) YABD_BACSU : 73- 80: idmte EdLawikE lsahe YBF5_YEAST : 309- 316: slrte EnLavvkQ ipter YBF5_YEAST : 320- 327: kqipt ErLlletD apwce YCFH_ECOLI : 16- 23: dgldy EsLhkdvD dvlak YCFH_HAEIN : 79- 86: epyda ErLlrlaQ dpkvi YCFH_HAEIN : 199- 206: ryvpm ErLlvetD spyla YG64_HAEIN : 217- 224: ragis EqLlavlQ klael YIGW_ECOLI : 83- 89: eeaii E-LaaqpE vvaig YIGW_ECOLI : 200- 207: plipa EkLlietD apyll YJJV_ECOLI : 79- 86: sdvsl EqLqqalE rrpak YJJV_HAEIN : 19- 26: qqftg EpLsqliD nakqa YMES_BACST : 16- 23: avqye EdLeqviE rarae M 13: 10.2558 13( 9) E-R-x(2)-[AILPV] Occurences: 13(9) YABD_BACSU : 23- 27: leevi ERakA ekver YABD_BACSU : 31- 35: kaekv ERivV vgfdr YBF5_YEAST : 239- 243: fvqil ERfiA gftde YBF5_YEAST : 320- 324: kqipt ERllL etdap YCFH_ECOLI : 56- 60: rdlvg ERdnV vfscg YCFH_HAEIN : 199- 203: ryvpm ERllV etdsp YG64_HAEIN : 114- 118: yiell ERfiL iakkw YG64_HAEIN : 211- 215: qhegf ERagI seqll YIGW_ECOLI : 111- 115: tpeeq ERafV aqlri YIGW_ECOLI : 184- 188: gwvcd ERrgL elrel YJJV_ECOLI : 86- 90: lqqal ERrpA kvvav YJJV_HAEIN : 102- 106: aeigl ERaiP dlltd YMES_BACST : 23- 27: leqvi ERarA egvsh N 14: 9.7489 19( 9) A-x(1,2)-E-[AGILV] Occurences: 19(9) YABD_BACSU : 118- 121: nqial Ak-EV nlpii YBF5_YEAST : 92- 95: aesqs Ai-EL vssvk YBF5_YEAST : 371- 374: adkln Ae-EL ymvkg YCFH_ECOLI : 84- 88: dlrrl AaeEG vvalg YCFH_ECOLI : 85- 88: lrrla Ae-EG vvalg YCFH_HAEIN : 92- 96: dpkvi AigEI gldyy YCFH_HAEIN : 188- 192: fknae AirEV iryvp YG64_HAEIN : 87- 91: hssis AigEV glphy YG64_HAEIN : 139- 142: ndvei Al-EL lqkhn YIGW_ECOLI : 76- 80: sqwqa AteEA iiela YIGW_ECOLI : 80- 84: aatee AiiEL aaqpe YIGW_ECOLI : 86- 90: iiela AqpEV vaige YJJV_ECOLI : 40- 43: kiivp At-EA enfar YJJV_ECOLI : 94- 98: pakvv AvgEI gldlf YJJV_ECOLI : 241- 244: lrrep Ad-EI aqall YJJV_HAEIN : 40- 44: kilvv AvkEA dfkti YJJV_HAEIN : 95- 99: dtnct AvaEI glera YMES_BACST : 25- 29: qvier AraEG vshiv YMES_BACST : 46- 49: ptidr Ai-EL O 15: 8.3401 24( 9) A-x(2)-L Occurences: 24(9) YABD_BACSU : 248- 251: itten AkrL frin YBF5_YEAST : 92- 95: aesqs AieL vssvk YBF5_YEAST : 283- 286: sftgs AidL qklln YBF5_YEAST : 366- 369: kknkl AdkL naeel YBF5_YEAST : 371- 374: adkln AeeL ymvkg YCFH_ECOLI : 41- 44: fclav AttL pgylh YCFH_HAEIN : 78- 81: eepyd AerL lrlaq YCFH_HAEIN : 121- 124: sqidi AnqL dkpvi YCFH_HAEIN : 168- 171: efxkk AldL gfyis YG64_HAEIN : 39- 42: tnlns AkkL lnlkq YG64_HAEIN : 139- 142: ndvei AleL lqkhn YG64_HAEIN : 189- 192: ktqyv AqhL slnrl YIGW_ECOLI : 49- 52: resqq AqkL arqys YIGW_ECOLI : 121- 124: aqlri AadL nmpvf YIGW_ECOLI : 199- 202: lplip AekL lietd YIGW_ECOLI : 208- 211: lietd ApyL lprdl YIGW_ECOLI : 245- 248: wrged AawL aattd YJJV_ECOLI : 47- 50: eaenf ArvL alaen YJJV_ECOLI : 62- 65: qplya AlgL hpgml YJJV_ECOLI : 142- 145: thdkl AmhL krhdl YJJV_ECOLI : 200- 203: aklpl AslL letda YJJV_ECOLI : 245- 248: padei AqaL lnnty YJJV_HAEIN : 206- 209: klpld AlvL etdsp YMES_BACST : 46- 49: ptidr AieL P 16: 8.3401 22( 9) A-E Occurences: 22(9) YABD_BACSU : 11- 12: hahln AE qydtd YABD_BACSU : 27- 28: ierak AE kveri YABD_BACSU : 145- 146: lkeeg AE avggi YABD_BACSU : 159- 160: cftgs AE varec YABD_BACSU : 226- 227: yvkyv AE qiael YABD_BACSU : 230- 231: vaeqi AE lkemt YBF5_YEAST : 87- 88: tgssi AE sqsai YBF5_YEAST : 371- 372: adkln AE elymv YCFH_ECOLI : 85- 86: lrrla AE egvva YCFH_HAEIN : 78- 79: eepyd AE rllrl YCFH_HAEIN : 148- 149: lrqhr AE kcggv YCFH_HAEIN : 186- 187: vtfkn AE airev YCFH_HAEIN : 240- 241: lkgvs AE afaqi YG64_HAEIN : 227- 228: vlqkl AE lkslp YIGW_ECOLI : 199- 200: lplip AE kllie YJJV_ECOLI : 43- 44: vpate AE nfarv YJJV_ECOLI : 53- 54: rvlal AE nyqpl YJJV_ECOLI : 166- 167: gslqq AE rfvql YJJV_HAEIN : 75- 76: yiqeh AE ndlil YJJV_HAEIN : 97- 98: nctav AE igler YJJV_HAEIN : 246- 247: lrnep AE likkl YMES_BACST : 27- 28: ierar AE gvshi Q 17: 8.3401 14( 9) E-x-D Occurences: 14(9) YABD_BACSU : 52- 54: memie EyD fiyaa YABD_BACSU : 72- 74: aidmt EeD lawik YABD_BACSU : 201- 203: drlli EtD cpflt YBF5_YEAST : 248- 250: agftd ErD tfqlq YBF5_YEAST : 325- 327: erlll EtD apwce YCFH_ECOLI : 56- 58: rdlvg ErD nvvfs YCFH_HAEIN : 204- 206: erllv EtD spyla YG64_HAEIN : 200- 202: nrlmi EtD spwqh YIGW_ECOLI : 205- 207: eklli EtD apyll YJJV_ECOLI : 205- 207: aslll EtD apdmp YJJV_HAEIN : 43- 45: vvavk EaD fktiq YJJV_HAEIN : 76- 78: iqeha EnD lille YJJV_HAEIN : 210- 212: dalvl EtD spdmp YMES_BACST : 15- 17: navqy EeD leqvi R 18: 8.3401 12( 9) A-V Occurences: 12(9) YABD_BACSU : 147- 148: eegae AV ggimh YBF5_YEAST : 312- 313: teenl AV vkqip YCFH_ECOLI : 39- 40: vkfcl AV attlp YCFH_HAEIN : 112- 113: kaaqq AV fgsqi YG64_HAEIN : 31- 32: iigml AV stnln YG64_HAEIN : 221- 222: seqll AV lqkla YIGW_ECOLI : 153- 154: dklpg AV lhcft YJJV_ECOLI : 94- 95: pakvv AV geigl YJJV_ECOLI : 231- 232: aarvf AV lcelr YJJV_HAEIN : 40- 41: kilvv AV keadf YJJV_HAEIN : 95- 96: dtnct AV aeigl YMES_BACST : 11- 12: hahln AV qyeed S 19: 8.3401 16( 9) L-x-A Occurences: 16(9) YABD_BACSU : 9- 11: dthah LnA eqydt YABD_BACSU : 81- 83: awike LsA hekvv YBF5_YEAST : 147- 149: aynes LyA kvisn YBF5_YEAST : 257- 259: fqlqk LgA ssssg YBF5_YEAST : 369- 371: kladk LnA eelym YCFH_ECOLI : 83- 85: edlrr LaA eegvv YCFH_HAEIN : 10- 12: dshch LdA ldyen YCFH_HAEIN : 37- 39: rdvkh LlA igvtl YG64_HAEIN : 118- 120: lerfi LiA kkwdl YG64_HAEIN : 219- 221: giseq LlA vlqkl YIGW_ECOLI : 84- 86: eaiie LaA qpevv YIGW_ECOLI : 248- 250: edaaw LaA ttdan YJJV_ECOLI : 59- 61: enyqp LyA alglh YJJV_HAEIN : 113- 115: lltde LwA kqchf YJJV_HAEIN : 204- 206: iaklp LdA lvlet YMES_BACST : 9- 11: dthah LnA vqyee T 20: 8.3401 10( 9) A-x(5)-Q Occurences: 10(9) YABD_BACSU : 7- 13: lfdth AhlnaeQ ydtdl YBF5_YEAST : 230- 236: lhmrs AcddfvQ ilerf YCFH_ECOLI : 91- 97: eegvv AlgetgQ dyyyt YCFH_HAEIN : 104- 110: dyyys AdnkaaQ qavfg YG64_HAEIN : 57- 63: klyia AgfhpeQ qlpsl YIGW_ECOLI : 49- 55: resqq AqklarQ ysscw YJJV_ECOLI : 51- 57: farvl AlaenyQ plyaa YJJV_HAEIN : 28- 34: qlidn AkqadvQ kilvv YJJV_HAEIN : 44- 50: vavke AdfktiQ nmtal YMES_BACST : 7- 13: lfdth AhlnavQ yeedl Number of patterns evaluated by Pratt:203 Total running time: 1 seconds