------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file YABO PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename YABO.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: Y042_HAEIN 224 YA32_SCHPO 394 YABO_ECOLI 219 YABO_HAEIN 219 YCEC_ECOLI 319 YCEC_HAEIN 322 YE35_HAEIN 182 YFII_ECOLI 287 YFII_HAEIN 324 YFII_PSEAE 185 YPH2_MYCCA 145 Pratt run started at Thu Feb 6 21:35:57 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 11( 11) R-L-D-x(2)-T 2: 12.5102 11( 11) L-D-x(2)-T 3: 11.5102 13( 11) K-x(0,2)-P-x(5)-H 4: 11.0102 15( 11) V-x(1,2)-R-x(0,2)-L 5: 11.0102 18( 11) K-x(2,3)-L-x(0,2)-V 6: 11.0102 18( 11) K-x(2,4)-L-x(0,1)-V 7: 11.0102 17( 11) V-x(2,4)-L-x(1,2)-K 8: 11.0102 19( 11) L-x(1,2)-V-x(0,2)-P 9: 11.0102 17( 11) L-x(1,3)-I-x(2,3)-D 10: 11.0102 13( 11) L-x(0,1)-K-x(2,4)-T 11: 10.5102 16( 11) H-x(0,2)-R-x(0,2)-L 12: 10.5102 24( 11) L-x(1,3)-I-x(1,3)-D 13: 8.3401 13( 11) D-x(2)-T 14: 8.3401 12( 11) H-R 15: 8.3401 18( 11) L-E 16: 8.3401 19( 11) L-x(5)-I 17: 8.3401 17( 11) D-x(5)-I 18: 8.3401 24( 11) V-x-K 19: 8.3401 18( 11) S-x-L 20: 8.3401 23( 11) V-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 19.8556 11( 11) R-L-D-x(2)-T-[ST] B 2: 17.8580 11( 11) H-R-x-[DE]-x(2)-[TV]-[ST] C 3: 16.8880 12( 11) H-x(0,2)-R-x(0,2)-L-[DQ]-x(2)-[GT] D 4: 15.6856 11( 11) L-D-x(2)-T-[ST] E 5: 13.7482 13( 11) K-x(0,2)-P-x-[DGNT]-x(3)-H F 6: 13.2546 12( 11) L-x(1,3)-I-x(2,3)-D-[DEGN] G 7: 13.2142 13( 11) V-x(1,2)-R-x(0,2)-L-x(3)-[EGST] H 8: 12.7546 13( 11) L-x(1,3)-I-x(1,3)-D-[DEGN] I 9: 11.5155 12( 11) D-x(2)-T-[ST] J 10: 11.0102 18( 11) K-x(2,3)-L-x(0,2)-V K 11: 11.0102 18( 11) K-x(2,4)-L-x(0,1)-V L 12: 11.0102 17( 11) V-x(2,4)-L-x(1,2)-K M 13: 11.0102 19( 11) L-x(1,2)-V-x(0,2)-P N 14: 11.0102 13( 11) L-x(0,1)-K-x(2,4)-T O 15: 10.2280 16( 11) V-x-K-[DGPST] P 16: 8.3401 18( 11) L-E Q 17: 8.3401 19( 11) L-x(5)-I R 18: 8.3401 17( 11) D-x(5)-I S 19: 8.3401 18( 11) S-x-L T 20: 8.3401 23( 11) V-x(3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 19.8556 11( 11) R-L-D-x(2)-T-[ST] Occurences: 11(11) Y042_HAEIN : 50- 56: vwlvh RLDkvTS gllil YA32_SCHPO : 154- 160: lypcn RLDrlTS glmff YABO_ECOLI : 62- 68: aesvh RLDmaTS gvivv YABO_HAEIN : 62- 68: cepah RLDmaTS giivf YCEC_ECOLI : 142- 148: lelvh RLDrdTS gvllv YCEC_HAEIN : 147- 153: lelvh RLDrdTS gilli YE35_HAEIN : 52- 58: vfpih RLDrpTS gvllf YFII_ECOLI : 98- 104: agivh RLDkdTT glmvv YFII_HAEIN : 136- 142: agivh RLDkdTT glmvv YFII_PSEAE : 136- 142: agivh RLDkdTT glmvv YPH2_MYCCA : 139- 145: ishvh RLDklTS B 2: 17.8580 11( 11) H-R-x-[DE]-x(2)-[TV]-[ST] Occurences: 11(11) Y042_HAEIN : 49- 56: kvwlv HRlDkvTS gllil YA32_SCHPO : 94- 101: vshha HRhEppVS dqpvg YABO_ECOLI : 61- 68: qaesv HRlDmaTS gvivv YABO_HAEIN : 61- 68: fcepa HRlDmaTS giivf YCEC_ECOLI : 141- 148: flelv HRlDrdTS gvllv YCEC_HAEIN : 146- 153: flelv HRlDrdTS gilli YE35_HAEIN : 51- 58: hvfpi HRlDrpTS gvllf YFII_ECOLI : 97- 104: ragiv HRlDkdTT glmvv YFII_HAEIN : 135- 142: ragiv HRlDkdTT glmvv YFII_PSEAE : 135- 142: ragiv HRlDkdTT glmvv YPH2_MYCCA : 138- 145: vishv HRlDklTS C 3: 16.8880 12( 11) H-x(0,2)-R-x(0,2)-L-[DQ]-x(2)-[GT] Occurences: 12(11) Y042_HAEIN : 49- 55: kvwlv H--R--LDkvT sglli YA32_SCHPO : 253- 263: ltgrt HqlRvhLQylG ypian YABO_ECOLI : 61- 67: qaesv H--R--LDmaT sgviv YABO_HAEIN : 61- 67: fcepa H--R--LDmaT sgiiv YCEC_ECOLI : 141- 147: flelv H--R--LDrdT sgvll YCEC_HAEIN : 146- 152: flelv H--R--LDrdT sgill YE35_HAEIN : 51- 57: hvfpi H--R--LDrpT sgvll YFII_ECOLI : 97- 103: ragiv H--R--LDkdT tglmv YFII_HAEIN : 135- 141: ragiv H--R--LDkdT tglmv YFII_PSEAE : 135- 141: ragiv H--R--LDkdT tglmv YPH2_MYCCA : 136- 144: sfvis HvhR--LDklT s YPH2_MYCCA : 138- 144: vishv H--R--LDklT s D 4: 15.6856 11( 11) L-D-x(2)-T-[ST] Occurences: 11(11) Y042_HAEIN : 51- 56: wlvhr LDkvTS gllil YA32_SCHPO : 155- 160: ypcnr LDrlTS glmff YABO_ECOLI : 63- 68: esvhr LDmaTS gvivv YABO_HAEIN : 63- 68: epahr LDmaTS giivf YCEC_ECOLI : 143- 148: elvhr LDrdTS gvllv YCEC_HAEIN : 148- 153: elvhr LDrdTS gilli YE35_HAEIN : 53- 58: fpihr LDrpTS gvllf YFII_ECOLI : 99- 104: givhr LDkdTT glmvv YFII_HAEIN : 137- 142: givhr LDkdTT glmvv YFII_PSEAE : 137- 142: givhr LDkdTT glmvv YPH2_MYCCA : 140- 145: shvhr LDklTS E 5: 13.7482 13( 11) K-x(0,2)-P-x-[DGNT]-x(3)-H Occurences: 13(11) Y042_HAEIN : 140- 147: rlfil K--PqTgktH qlrva YA32_SCHPO : 119- 126: yvvid K--PaGvpvH ptgry YA32_SCHPO : 246- 253: slvlc K--PlTgrtH qlrvh YABO_ECOLI : 155- 162: arvvl K--PiTgrsH qlrvh YABO_HAEIN : 153- 162: nstrv KltPvTgrsH qlrlh YCEC_ECOLI : 107- 114: ilvln K--PsGtavH ggsgl YCEC_HAEIN : 112- 119: liiln K--PsGiavH ggsgl YCEC_HAEIN : 238- 247: natlv KasPvTgrtH qirvh YE35_HAEIN : 16- 23: lvavn K--PaGmlvH rswld YFII_ECOLI : 59- 66: iiiin K--PrDlvvH pgagn YFII_HAEIN : 97- 104: iivin K--PkDlvvH pgagn YFII_PSEAE : 97- 104: ilvid K--PaGlvvH paagh YPH2_MYCCA : 96- 103: ilivn K--PnNlemH siynl F 6: 13.2546 12( 11) L-x(1,3)-I-x(2,3)-D-[DEGN] Occurences: 12(11) Y042_HAEIN : 156- 164: vamks LgspIlg-DG lygkn YA32_SCHPO : 217- 224: aptlg Lnr-Ihp-DG keast YABO_ECOLI : 14- 21: pqepw Lv--IlyqDD himvv YABO_HAEIN : 14- 21: plepy Ldi-Iyq-DN hlcvv YABO_HAEIN : 14- 21: plepy Ld--IiyqDN hlcvv YCEC_ECOLI : 91- 100: qkvaa LadvIlyeDD hilvl YCEC_HAEIN : 16- 22: ssvkm Lt--Ise-DE sgqri YCEC_HAEIN : 96- 105: nkvaa LenqIlfeDD cliil YE35_HAEIN : 2- 9: m Le--IlyqDG flvav YFII_ECOLI : 45- 52: pqdip Ld--IvyeDE diiii YFII_HAEIN : 83- 90: aenip Ln--IvyeDD diivi YFII_PSEAE : 83- 90: aqdie Le--IvyeDE hilvi YPH2_MYCCA : 82- 89: isnvn Ld--IvyeDN niliv G 7: 13.2142 13( 11) V-x(1,2)-R-x(0,2)-L-x(3)-[EGST] Occurences: 13(11) Y042_HAEIN : 48- 55: pkvwl Vh-R--LdkvT sglli YA32_SCHPO : 293- 301: gsnes VimR--LseiG kteta YABO_ECOLI : 60- 67: pqaes Vh-R--LdmaT sgviv YABO_HAEIN : 141- 149: vtkfe VlaR--LpnnS trvkl YCEC_ECOLI : 140- 147: rflel Vh-R--LdrdT sgvll YCEC_HAEIN : 145- 152: rflel Vh-R--LdrdT sgill YE35_HAEIN : 22- 31: pagml Vh-RswLdphE tqfvm YE35_HAEIN : 89- 98: ksyla Vv-RgyLqgkE ridyp YFII_ECOLI : 96- 103: pragi Vh-R--LdkdT tglmv YFII_ECOLI : 181- 191: mehfr VhtRlrLrleT grthq YFII_HAEIN : 134- 141: pragi Vh-R--LdkdT tglmv YFII_PSEAE : 134- 141: pragi Vh-R--LdkdT tglmv YPH2_MYCCA : 137- 144: fvish Vh-R--LdklT s H 8: 12.7546 13( 11) L-x(1,3)-I-x(1,3)-D-[DEGN] Occurences: 13(11) Y042_HAEIN : 156- 164: vamks LgspIlg-DG lygkn YA32_SCHPO : 217- 224: aptlg Lnr-Ihp-DG keast YABO_ECOLI : 14- 21: pqepw Lv--IlyqDD himvv YABO_HAEIN : 14- 21: plepy Ldi-Iyq-DN hlcvv YABO_HAEIN : 14- 21: plepy Ld--IiyqDN hlcvv YCEC_ECOLI : 91- 100: qkvaa LadvIlyeDD hilvl YCEC_HAEIN : 16- 22: ssvkm Lt--Ise-DE sgqri YCEC_HAEIN : 96- 105: nkvaa LenqIlfeDD cliil YE35_HAEIN : 2- 9: m Le--IlyqDG flvav YFII_ECOLI : 45- 52: pqdip Ld--IvyeDE diiii YFII_HAEIN : 83- 90: aenip Ln--IvyeDD diivi YFII_PSEAE : 36- 43: hsrsr LagwIk--DG rltvd YFII_PSEAE : 83- 90: aqdie Le--IvyeDE hilvi YPH2_MYCCA : 82- 89: isnvn Ld--IvyeDN niliv I 9: 11.5155 12( 11) D-x(2)-T-[ST] Occurences: 12(11) Y042_HAEIN : 52- 56: lvhrl DkvTS gllil YA32_SCHPO : 156- 160: pcnrl DrlTS glmff YA32_SCHPO : 237- 241: kriaf DghTS lvlck YABO_ECOLI : 64- 68: svhrl DmaTS gvivv YABO_HAEIN : 64- 68: pahrl DmaTS giivf YCEC_ECOLI : 144- 148: lvhrl DrdTS gvllv YCEC_HAEIN : 149- 153: lvhrl DrdTS gilli YE35_HAEIN : 54- 58: pihrl DrpTS gvllf YFII_ECOLI : 100- 104: ivhrl DkdTT glmvv YFII_HAEIN : 138- 142: ivhrl DkdTT glmvv YFII_PSEAE : 138- 142: ivhrl DkdTT glmvv YPH2_MYCCA : 141- 145: hvhrl DklTS J 10: 11.0102 18( 11) K-x(2,3)-L-x(0,2)-V Occurences: 18(11) Y042_HAEIN : 44- 48: qlnvp Kvw-L--V hrldk Y042_HAEIN : 145- 151: kpqtg KthqLr-V amksl YA32_SCHPO : 18- 25: ceyvf KgdgLrrV ppyyy YA32_SCHPO : 43- 48: lrwyg Ktl-Le-V fntef YA32_SCHPO : 378- 383: ktqlp Kwa-Ld-V ccrdp YABO_ECOLI : 28- 35: imvvn KpsgLlsV pgrle YABO_HAEIN : 28- 35: lcvvn KpsgLlsV pgnqp YCEC_ECOLI : 87- 94: sphlq KvaaLadV ilyed YCEC_ECOLI : 174- 180: ekgmq Kdy-LalV rgqwq YCEC_HAEIN : 179- 185: vktvq Kdy-LalV rgqwq YE35_HAEIN : 84- 89: qkyvq Ksy-La-V vrgyl YE35_HAEIN : 84- 90: qkyvq Ksy-LavV rgylq YFII_ECOLI : 59- 64: iiiin KprdL--V vhpga YFII_ECOLI : 59- 65: iiiin KprdLv-V hpgag YFII_HAEIN : 97- 102: iivin KpkdL--V vhpga YFII_HAEIN : 97- 103: iivin KpkdLv-V hpgag YFII_HAEIN : 194- 200: arhat Krt-LmaV hpmgk YFII_HAEIN : 274- 281: vlrnf KrqaLhaV mlrla YFII_PSEAE : 41- 47: lagwi KdgrLt-V dgavv YFII_PSEAE : 97- 102: ilvid KpagL--V vhpaa YFII_PSEAE : 97- 103: ilvid KpagLv-V hpaag YPH2_MYCCA : 115- 119: lddmv Ksy-L--V dkkey K 11: 11.0102 18( 11) K-x(2,4)-L-x(0,1)-V Occurences: 18(11) Y042_HAEIN : 44- 48: qlnvp Kvw--L-V hrldk Y042_HAEIN : 145- 151: kpqtg Kthq-LrV amksl YA32_SCHPO : 43- 48: lrwyg Ktl--LeV fntef YA32_SCHPO : 378- 383: ktqlp Kwa--LdV ccrdp YABO_ECOLI : 28- 35: imvvn KpsglLsV pgrle YABO_HAEIN : 28- 35: lcvvn KpsglLsV pgnqp YCEC_ECOLI : 174- 180: ekgmq KdylaL-V rgqwq YCEC_HAEIN : 179- 185: vktvq KdylaL-V rgqwq YE35_HAEIN : 16- 22: lvavn KpagmL-V hrswl YE35_HAEIN : 84- 89: qkyvq Ksy--LaV vrgyl YFII_ECOLI : 59- 64: iiiin Kprd-L-V vhpga YFII_ECOLI : 59- 65: iiiin Kprd-LvV hpgag YFII_ECOLI : 101- 108: vhrld KdttgLmV vaktv YFII_HAEIN : 97- 102: iivin Kpkd-L-V vhpga YFII_HAEIN : 97- 103: iivin Kpkd-LvV hpgag YFII_HAEIN : 139- 146: vhrld KdttgLmV vakti YFII_PSEAE : 41- 47: lagwi Kdgr-LtV dgavv YFII_PSEAE : 97- 102: ilvid Kpag-L-V vhpaa YFII_PSEAE : 97- 103: ilvid Kpag-LvV hpaag YFII_PSEAE : 139- 146: vhrld KdttgLmV vaktl YPH2_MYCCA : 115- 119: lddmv Ksy--L-V dkkey L 12: 11.0102 17( 11) V-x(2,4)-L-x(1,2)-K Occurences: 17(11) Y042_HAEIN : 48- 53: pkvwl Vhr--Ld-K vtsgl YA32_SCHPO : 136- 142: ynhnt Vlhi-Lm-K enkcs YA32_SCHPO : 277- 284: yankr VwgpsLg-K ngegs YABO_ECOLI : 70- 77: matsg VivvaLt-K aaere YABO_ECOLI : 72- 77: tsgvi Vva--Lt-K aaere YABO_HAEIN : 72- 77: tsgii Vfa--Ls-K aadre YCEC_ECOLI : 81- 87: reeea Vsph-Lq-K vaala YCEC_ECOLI : 191- 197: shvks Vqap-Ll-K nilqs YCEC_HAEIN : 195- 202: qshik ViqasLl-K nelss YE35_HAEIN : 89- 97: ksyla VvrgyLqgK eridy YE35_HAEIN : 90- 97: sylav Vrgy-LqgK eridy YFII_ECOLI : 96- 101: pragi Vhr--Ld-K dttgl YFII_HAEIN : 134- 139: pragi Vhr--Ld-K dttgl YFII_HAEIN : 158- 163: aqtkl Vrd--Lq-K rkitr YFII_PSEAE : 134- 139: pragi Vhr--Ld-K dttgl YPH2_MYCCA : 114- 121: clddm Vksy-LvdK keydi YPH2_MYCCA : 137- 142: fvish Vhr--Ld-K lts M 13: 11.0102 19( 11) L-x(1,2)-V-x(0,2)-P Occurences: 19(11) Y042_HAEIN : 40- 43: lvakq Ln-V--P kvwlv YA32_SCHPO : 22- 26: fkgdg LrrV--P pyyye YA32_SCHPO : 22- 27: fkgdg LrrVp-P yyyey YA32_SCHPO : 208- 213: icdap LltVa-P tlgln YA32_SCHPO : 209- 213: cdapl Lt-Va-P tlgln YABO_ECOLI : 32- 36: nkpsg LlsV--P grlee YABO_ECOLI : 33- 36: kpsgl Ls-V--P grlee YABO_HAEIN : 23- 29: yqdnh LcvVnkP sglls YABO_HAEIN : 32- 36: nkpsg LlsV--P gnqpq YABO_HAEIN : 33- 36: kpsgl Ls-V--P gnqpq YCEC_ECOLI : 30- 34: flrtq LkgV--P ksmiy YCEC_HAEIN : 35- 39: yllak LkgV--P ksliy YE35_HAEIN : 11- 17: yqdgf LvaVnkP agmlv YE35_HAEIN : 132- 138: tdyeg LkiVemP ypagr YFII_ECOLI : 63- 67: nkprd Lv-Vh-P gagnp YFII_HAEIN : 101- 105: nkpkd Lv-Vh-P gagnp YFII_HAEIN : 197- 202: atkrt LmaVh-P mgkpa YFII_PSEAE : 101- 105: dkpag Lv-Vh-P aaghq YFII_PSEAE : 119- 123: llnal LyhV--P dianv YPH2_MYCCA : 92- 97: ednni Li-VnkP nnlem N 14: 11.0102 13( 11) L-x(0,1)-K-x(2,4)-T Occurences: 13(11) Y042_HAEIN : 139- 143: lrlfi L-Kpq--T gkthq YA32_SCHPO : 244- 249: htslv LcKpl--T grthq YABO_ECOLI : 154- 158: tarvv L-Kpi--T grshq YABO_HAEIN : 131- 137: rldfv LgKrav-T kfevl YCEC_ECOLI : 105- 111: dhilv LnKpsg-T avhgg YCEC_HAEIN : 236- 243: yinat LvKaspvT grthq YE35_HAEIN : 151- 158: tarys LvKliphT gqktp YFII_ECOLI : 99- 104: givhr LdKdt--T glmvv YFII_HAEIN : 137- 142: givhr LdKdt--T glmvv YFII_HAEIN : 161- 167: klvrd LqKrki-T reyea YFII_PSEAE : 137- 142: givhr LdKdt--T glmvv YPH2_MYCCA : 15- 22: dqnqt LfKflkkT fkttp YPH2_MYCCA : 19- 25: tlfkf LkKtfk-T tpisv YPH2_MYCCA : 19- 25: tlfkf L-KktfkT tpisv YPH2_MYCCA : 19- 26: tlfkf LkKtfktT pisvi O 15: 10.2280 16( 11) V-x-K-[DGPST] Occurences: 16(11) Y042_HAEIN : 23- 26: segis VhKD qeeqg YA32_SCHPO : 16- 19: kdcey VfKG dglrr YABO_ECOLI : 26- 29: dhimv VnKP sglls YABO_ECOLI : 153- 156: ntarv VlKP itgrs YABO_HAEIN : 26- 29: nhlcv VnKP sglls YCEC_ECOLI : 33- 36: tqlkg VpKS miyri YCEC_HAEIN : 38- 41: aklkg VpKS liyri YCEC_HAEIN : 47- 50: liyri VrKG evrvn YCEC_HAEIN : 54- 57: kgevr VnKG rikpe YCEC_HAEIN : 177- 180: lrvkt VqKD ylalv YE35_HAEIN : 14- 17: gflva VnKP agmlv YE35_HAEIN : 82- 85: feqky VqKS ylavv YFII_ECOLI : 109- 112: tglmv VaKT vpaqt YFII_HAEIN : 147- 150: tglmv VaKT ipaqt YFII_PSEAE : 147- 150: tglmv VaKT leaht YPH2_MYCCA : 94- 97: nnili VnKP nnlem P 16: 8.3401 18( 11) L-E Occurences: 18(11) Y042_HAEIN : 183- 184: lhatq LE fdyln YA32_SCHPO : 46- 47: ygktl LE vfnte YABO_ECOLI : 39- 40: svpgr LE ehkds YABO_HAEIN : 10- 11: eynpp LE pyldi YABO_HAEIN : 104- 105: ivwgh LE ndyge YCEC_ECOLI : 60- 61: kpeyk LE agdev YCEC_ECOLI : 137- 138: pearf LE lvhrl YCEC_HAEIN : 96- 97: nkvaa LE nqilf YCEC_HAEIN : 142- 143: pearf LE lvhrl YE35_HAEIN : 2- 3: m LE ilyqd YFII_ECOLI : 189- 190: rlrlr LE tgrth YFII_HAEIN : 227- 228: rlrlr LE tgrth YFII_HAEIN : 316- 317: lkady LE hqdel YFII_PSEAE : 66- 67: gaqlv LE aeqea YFII_PSEAE : 83- 84: aqdie LE ivyed YFII_PSEAE : 151- 152: vvakt LE ahtkl YPH2_MYCCA : 100- 101: nkpnn LE mhsiy YPH2_MYCCA : 128- 129: eydiy LE nsfvi Q 17: 8.3401 19( 11) L-x(5)-I Occurences: 19(11) Y042_HAEIN : 74- 80: aefsr LfsehkI hktyl YA32_SCHPO : 82- 88: gnvdt LiengyI vshha YABO_ECOLI : 17- 23: pwlvi LyqddhI mvvnk YABO_ECOLI : 110- 116: spaeg LvdlplI cdwpn YABO_ECOLI : 169- 175: lrvhm LalghpI lgdrf YABO_HAEIN : 10- 16: eynpp LepyldI iyqdn YABO_HAEIN : 169- 175: lrlhm LalghpI lgdkf YABO_HAEIN : 200- 206: lhaee LtithpI tgetm YCEC_ECOLI : 96- 102: ladvi LyeddhI lvlnk YCEC_ECOLI : 200- 206: llkni LqsgerI vrvsq YCEC_HAEIN : 110- 116: dclii LnkpsgI avhgg YCEC_HAEIN : 205- 211: llkne LssgerI vrvse YE35_HAEIN : 94- 100: vvrgy LqgkerI dyplk YFII_ECOLI : 81- 87: vlnal LhyyppI advpr YFII_ECOLI : 245- 251: lhatm LrlyhpI sgiem YFII_HAEIN : 119- 125: vlnal LyhyppI vevpr YFII_HAEIN : 283- 289: lhavm LrlahpI tgemm YFII_PSEAE : 119- 125: llnal LyhvpdI anvpr YPH2_MYCCA : 128- 134: eydiy LensfvI shvhr R 18: 8.3401 17( 11) D-x(5)-I Occurences: 17(11) Y042_HAEIN : 186- 192: tqlef DylnnfI svtcl YA32_SCHPO : 111- 117: givhe DesyvvI dkpag YA32_SCHPO : 387- 393: dvccr DpnalpI e YABO_ECOLI : 44- 50: leehk DsvmtrI qrdyp YABO_HAEIN : 64- 70: pahrl DmatsgI ivfal YCEC_ECOLI : 16- 22: vaita DeagqrI dnflr YCEC_HAEIN : 21- 27: ltise DesgqrI dnyll YCEC_HAEIN : 149- 155: lvhrl DrdtsgI lliak YCEC_HAEIN : 308- 314: fnasl DhqmkaI lqklr YE35_HAEIN : 128- 134: qeait DyeglkI vempy YFII_ECOLI : 51- 57: divye DediiiI nkprd YFII_ECOLI : 89- 95: yppia DvpragI vhrld YFII_HAEIN : 89- 95: nivye DddiivI nkpkd YFII_HAEIN : 160- 166: tklvr DlqkrkI treye YFII_PSEAE : 89- 95: eivye DehilvI dkpag YPH2_MYCCA : 64- 70: vvevy DsnkpiI rdqfn YPH2_MYCCA : 120- 126: ksylv DkkeydI ylens S 19: 8.3401 18( 11) S-x-L Occurences: 18(11) Y042_HAEIN : 56- 58: ldkvt SgL lilal Y042_HAEIN : 72- 74: saaef SrL fsehk YA32_SCHPO : 147- 149: kenkc SlL ypcnr YA32_SCHPO : 160- 162: ldrlt SgL mffsk YA32_SCHPO : 307- 309: kteta SpL lqyew YABO_ECOLI : 30- 32: vvnkp SgL lsvpg YABO_HAEIN : 30- 32: vvnkp SgL lsvpg YCEC_ECOLI : 117- 119: avhgg SgL sfgvi YCEC_ECOLI : 158- 160: vakkr SaL rslhe YCEC_HAEIN : 122- 124: avhgg SgL nfgvi YCEC_HAEIN : 163- 165: iakkr SaL rnlhe YCEC_HAEIN : 199- 201: kviqa SlL knels YE35_HAEIN : 25- 27: mlvhr SwL dphet YE35_HAEIN : 85- 87: kyvqk SyL avvrg YFII_ECOLI : 230- 232: seafi StL rkfdr YFII_HAEIN : 33- 35: peysr SrL ktwie YFII_PSEAE : 34- 36: pehsr SrL agwik YPH2_MYCCA : 116- 118: ddmvk SyL vdkke T 20: 8.3401 23( 11) V-x(3)-L Occurences: 23(11) Y042_HAEIN : 36- 40: gltel VakqL nvpkv Y042_HAEIN : 54- 58: hrldk VtsgL lilal YA32_SCHPO : 136- 140: ynhnt VlhiL mkenk YA32_SCHPO : 211- 215: apllt VaptL glnri YA32_SCHPO : 293- 297: gsnes VimrL seigk YABO_ECOLI : 35- 39: sglls VpgrL eehkd YABO_ECOLI : 111- 115: paegl VdlpL icdwp YABO_HAEIN : 100- 104: hyqai VwghL endyg YABO_HAEIN : 141- 145: vtkfe VlarL pnnst YCEC_ECOLI : 81- 85: reeea VsphL qkvaa YCEC_ECOLI : 123- 127: glsfg ViegL ralrp YCEC_ECOLI : 191- 195: shvks VqapL lknil YCEC_HAEIN : 38- 42: aklkg VpksL iyriv YCEC_HAEIN : 128- 132: glnfg VieaL ralrp YE35_HAEIN : 35- 39: hetqf VmqtL rdqig YE35_HAEIN : 90- 94: sylav VrgyL qgker YFII_ECOLI : 76- 80: npdgt VlnaL lhyyp YFII_ECOLI : 181- 185: mehfr VhtrL rlrle YFII_HAEIN : 114- 118: npngt VlnaL lyhyp YFII_HAEIN : 281- 285: qalha VmlrL ahpit YFII_PSEAE : 11- 15: qraae VpfeL ggqrl YFII_PSEAE : 147- 151: tglmv VaktL eahtk YPH2_MYCCA : 114- 118: clddm VksyL vdkke Number of patterns evaluated by Pratt:552 Total running time: 1 seconds