------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file XPG_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename XPG_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FEN1_HUMAN 380 FEN1_MOUSE 378 RA13_SCHPO 1113 RAD2_SCHPO 380 RAD2_YEAST 1031 XPG_HUMAN 1186 XPG_MOUSE 1192 XPG_XENLA 1196 YKL3_YEAST 382 Pratt run started at Thu Feb 6 21:34:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 54.2107 9( 9) E-x(3)-L-L-x(3)-G-x-P-x(3)-A-P-x-E-A-E-A-x-C-x(2)-L 2: 48.5406 17( 9) L-x(0,1)-L-x(1,3)-G-x-P-x(3)-A-P-x-E-A-E-A-x-C-x(2)-L 3: 48.0406 17( 9) L-x(0,2)-L-x(1,3)-G-x-P-x(3)-A-P-x-E-A-E-A-x-C-x(2)-L 4: 44.8706 17( 9) L-x(1,3)-G-x-P-x(3)-A-P-x-E-A-E-A-x-C-x(2)-L 5: 37.5305 9( 9) P-x(3)-A-P-x-E-A-E-A-x-C-x(2)-L 6: 37.5305 9( 9) G-x(5)-A-P-x-E-A-E-A-x-C-x(2)-L 7: 37.5305 9( 9) I-x-P-x(2)-V-F-D-G-x(2)-P-x-L-K 8: 37.0305 9( 9) I-x-P-x(1,2)-V-F-D-G-x(2)-P-x-L-K 9: 37.0305 9( 9) I-x(0,1)-P-x(2)-V-F-D-G-x(2)-P-x-L-K 10: 36.5305 9( 9) I-x(0,1)-P-x(1,2)-V-F-D-G-x(2)-P-x-L-K 11: 35.5305 9( 9) I-x-P-x(0,2)-V-x(0,2)-F-D-G-x(2)-P-x-L-K 12: 33.3604 9( 9) A-P-x-E-A-E-A-x-C-x(2)-L 13: 33.3604 9( 9) P-x(2)-V-F-D-G-x(2)-P-x-L-K 14: 32.8604 9( 9) P-x(1,2)-V-F-D-G-x(2)-P-x-L-K 15: 32.3604 9( 9) P-x(2)-V-F-D-G-x(1,2)-P-x(1,2)-L-K 16: 31.3604 9( 9) P-x(0,2)-V-x(0,2)-F-D-G-x(2)-P-x-L-K 17: 29.1904 9( 9) P-x-E-A-E-A-x-C-x(2)-L 18: 28.1904 9( 9) V-F-D-G-x(1,2)-P-x(1,2)-L-K 19: 27.6904 9( 9) K-x(1,2)-A-x-D-x-S-x(4)-Q-x(5)-R-x(1,3)-G 20: 25.0203 9( 9) E-A-E-A-x-C-x(2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 76.9528 9( 9) E-[ACSV]-x-[EHKR]-L-L-x(2)-[FM]-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L B 2: 63.4597 17( 9) L-x(0,1)-L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L C 3: 62.9597 17( 9) L-x(0,2)-L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L D 4: 62.8527 9( 9) K-x(1,2)-A-[IV]-D-[AI]-S-[IM]-x-[IL]-x-Q-x-[LV]-x-[AGQ]-[AV]-R-x(1,3)-G-[DGNQ]-x-[ILV]-x-[NQS]-x(2)-[GILV]-x-[GT] E 5: 61.0600 9( 9) I-[KR]-P-x(0,2)-V-x(0,2)-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] F 6: 59.8119 9( 9) I-x-P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] G 7: 59.7896 17( 9) L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L H 8: 59.3119 9( 9) I-x-P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] I 9: 59.3119 9( 9) I-x(0,1)-P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] J 10: 58.8119 9( 9) I-x(0,1)-P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] K 11: 56.6196 9( 9) G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L L 12: 55.6418 9( 9) P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] M 13: 55.2059 9( 9) P-x-[FY]-V-F-D-G-x(1,2)-P-x(1,2)-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] N 14: 55.1418 9( 9) P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] O 15: 53.6418 9( 9) P-x(0,2)-V-x(0,2)-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] P 16: 49.7877 9( 9) P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Q 17: 47.8513 9( 9) V-F-D-G-x(1,2)-P-x(1,2)-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] R 18: 39.7713 9( 9) A-P-x-E-A-E-A-[QS]-C-[AS]-x-L S 19: 35.6013 9( 9) P-x-E-A-E-A-[QS]-C-[AS]-x-L T 20: 31.4312 9( 9) E-A-E-A-[QS]-C-[AS]-x-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 76.9528 9( 9) E-[ACSV]-x-[EHKR]-L-L-x(2)-[FM]-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 140- 166: kqhnd ECkHLLslMGIPYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 138- 164: kqhnd ECkHLLslMGIPYLdAPsEAEASCAaL akagk RA13_SCHPO : 760- 786: qvmik ECqELLrlFGLPYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 141- 167: rqhnd EAkRLLelMGIPFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 774- 800: mdmik EVqELLsrFGIPYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 771- 797: gqmfl ESqELLrlFGIPYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 784- 810: gqmfl ESqELLrlFGVPYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 804- 830: gqmcl ESqELLqlFGIPYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 138- 164: kehne EAqKLLglMGIPYIiAPtEAEAQCAeL akkgk B 2: 63.4597 17( 9) L-x(0,1)-L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 17(9) FEN1_HUMAN : 144- 166: deckh L-LslmGIPYLdAPsEAEASCAaL vkagk FEN1_HUMAN : 145- 166: eckhl LsLm--GIPYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 142- 164: deckh L-LslmGIPYLdAPsEAEASCAaL akagk FEN1_MOUSE : 143- 164: eckhl LsLm--GIPYLdAPsEAEASCAaL akagk RA13_SCHPO : 764- 786: kecqe L-LrlfGLPYIvAPqEAEAQCSkL lelkl RA13_SCHPO : 765- 786: ecqel LrLf--GLPYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 145- 167: deakr L-LelmGIPFVnAPcEAEAQCAaL arsgk RAD2_SCHPO : 146- 167: eakrl LeLm--GIPFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 778- 800: kevqe L-LsrfGIPYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 775- 797: lesqe L-LrlfGIPYIqAPmEAEAQCAiL dltdq XPG_HUMAN : 776- 797: esqel LrLf--GIPYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 788- 810: lesqe L-LrlfGVPYIqAPmEAEAQCAvL dlsdq XPG_MOUSE : 789- 810: esqel LrLf--GVPYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 808- 830: lesqe L-LqlfGIPYIvAPmEAEAQCAiL dltdq XPG_XENLA : 809- 830: esqel LqLf--GIPYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 142- 164: eeaqk L-LglmGIPYIiAPtEAEAQCAeL akkgk YKL3_YEAST : 143- 164: eaqkl LgLm--GIPYIiAPtEAEAQCAeL akkgk C 3: 62.9597 17( 9) L-x(0,2)-L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 17(9) FEN1_HUMAN : 144- 166: deckh LlsLm--GIPYLdAPsEAEASCAaL vkagk FEN1_HUMAN : 144- 166: deckh L--LslmGIPYLdAPsEAEASCAaL vkagk FEN1_HUMAN : 145- 166: eckhl Ls-Lm--GIPYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 142- 164: deckh LlsLm--GIPYLdAPsEAEASCAaL akagk FEN1_MOUSE : 142- 164: deckh L--LslmGIPYLdAPsEAEASCAaL akagk FEN1_MOUSE : 143- 164: eckhl Ls-Lm--GIPYLdAPsEAEASCAaL akagk RA13_SCHPO : 764- 786: kecqe LlrLf--GLPYIvAPqEAEAQCSkL lelkl RA13_SCHPO : 764- 786: kecqe L--LrlfGLPYIvAPqEAEAQCSkL lelkl RA13_SCHPO : 765- 786: ecqel Lr-Lf--GLPYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 145- 167: deakr LleLm--GIPFVnAPcEAEAQCAaL arsgk RAD2_SCHPO : 145- 167: deakr L--LelmGIPFVnAPcEAEAQCAaL arsgk RAD2_SCHPO : 146- 167: eakrl Le-Lm--GIPFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 778- 800: kevqe L--LsrfGIPYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 775- 797: lesqe LlrLf--GIPYIqAPmEAEAQCAiL dltdq XPG_HUMAN : 775- 797: lesqe L--LrlfGIPYIqAPmEAEAQCAiL dltdq XPG_HUMAN : 776- 797: esqel Lr-Lf--GIPYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 788- 810: lesqe LlrLf--GVPYIqAPmEAEAQCAvL dlsdq XPG_MOUSE : 788- 810: lesqe L--LrlfGVPYIqAPmEAEAQCAvL dlsdq XPG_MOUSE : 789- 810: esqel Lr-Lf--GVPYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 808- 830: lesqe LlqLf--GIPYIvAPmEAEAQCAiL dltdq XPG_XENLA : 808- 830: lesqe L--LqlfGIPYIvAPmEAEAQCAiL dltdq XPG_XENLA : 809- 830: esqel Lq-Lf--GIPYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 142- 164: eeaqk LlgLm--GIPYIiAPtEAEAQCAeL akkgk YKL3_YEAST : 142- 164: eeaqk L--LglmGIPYIiAPtEAEAQCAeL akkgk YKL3_YEAST : 143- 164: eaqkl Lg-Lm--GIPYIiAPtEAEAQCAeL akkgk D 4: 62.8527 9( 9) K-x(1,2)-A-[IV]-D-[AI]-S-[IM]-x-[IL]-x-Q-x-[LV]-x-[AGQ]-[AV]-R-x(1,3)-G-[DGNQ]-x-[ILV]-x-[NQS]-x(2)-[GILV]-x-[GT] Occurences: 9(9) FEN1_HUMAN : 30- 60: syfgr Kv-AIDASMsIyQfLiAVRqg-GDvLqNeeGeT tshlm FEN1_MOUSE : 30- 60: syfgr Kv-AIDASMsIyQfLiAVRqg-GDvLqNeeGeT tslmg RA13_SCHPO : 25- 57: etlvn KrlAIDASIwIyQfLkAVRdkeGNqLkSshVvG ffrri RAD2_SCHPO : 30- 61: nyfgr Kv-AIDASMsLyQfLiQVRsqdGQqLmNeqGeT tshlm RAD2_YEAST : 25- 57: esled KrmAVDASIwIyQfLkAVRdqeGNaVkNshItG ffrri XPG_HUMAN : 25- 57: ealeg KilAVDISIwLnQaLkGVRdrhGNsIeNphLlT lfhrl XPG_MOUSE : 25- 57: ealeg KvlAVDISIwLnQaLkGVRdshGNvIeNahLlT lfhrl XPG_XENLA : 25- 57: gtleg KilAVDISIwLnQaVkGARdrqGNaIqNahLlT lfhrl YKL3_YEAST : 30- 61: sffgr Kv-AIDASMsLyQfLiAVRqqdGGqLtNeaGeT tshlm E 5: 61.0600 9( 9) I-[KR]-P-x(0,2)-V-x(0,2)-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 79- 108: mmeng IKPvyV--FDGkPPqLKsgELakRsERraeaE kqlqq FEN1_HUMAN : 79- 108: mmeng IKP--VyvFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IKPvyV--FDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IKP--VyvFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 70- 99: llffg IKPvfV--FDGgAPsLKrqTIqkRqARrldrE enatv RA13_SCHPO : 70- 99: llffg IKP--VfvFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 80- 109: ivdng IKPcfV--FDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 70- 99: llyfg IRPvfV--FDGgVPvLKreTIrqRkERrqgkR esaks RAD2_YEAST : 70- 99: llyfg IRP--VfvFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 70- 99: llffr IRPifV--FDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 70- 99: llffr IRPifV--FDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 70- 99: llffr IRPifV--FDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 80- 109: midng IKPcyV--FDGkPPdLKshELtkRsSRrvetE kklae F 6: 59.8119 9( 9) I-x-P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 79- 108: mmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 70- 99: llffg IkPvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 80- 109: ivdng IkPcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 70- 99: llyfg IrPvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 70- 99: llffr IrPifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 70- 99: llffr IrPifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 70- 99: llffr IrPifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 80- 109: midng IkPcyVFDGkPPdLKshELtkRsSRrvetE kklae G 7: 59.7896 17( 9) L-x(1,3)-G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 17(9) FEN1_HUMAN : 145- 166: eckhl LslmGIPYLdAPsEAEASCAaL vkagk FEN1_HUMAN : 147- 166: khlls Lm--GIPYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 143- 164: eckhl LslmGIPYLdAPsEAEASCAaL akagk FEN1_MOUSE : 145- 164: khlls Lm--GIPYLdAPsEAEASCAaL akagk RA13_SCHPO : 765- 786: ecqel LrlfGLPYIvAPqEAEAQCSkL lelkl RA13_SCHPO : 767- 786: qellr Lf--GLPYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 146- 167: eakrl LelmGIPFVnAPcEAEAQCAaL arsgk RAD2_SCHPO : 148- 167: krlle Lm--GIPFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 779- 800: evqel LsrfGIPYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 776- 797: esqel LrlfGIPYIqAPmEAEAQCAiL dltdq XPG_HUMAN : 778- 797: qellr Lf--GIPYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 789- 810: esqel LrlfGVPYIqAPmEAEAQCAvL dlsdq XPG_MOUSE : 791- 810: qellr Lf--GVPYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 809- 830: esqel LqlfGIPYIvAPmEAEAQCAiL dltdq XPG_XENLA : 811- 830: qellq Lf--GIPYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 143- 164: eaqkl LglmGIPYIiAPtEAEAQCAeL akkgk YKL3_YEAST : 145- 164: qkllg Lm--GIPYIiAPtEAEAQCAeL akkgk H 8: 59.3119 9( 9) I-x-P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 79- 108: mmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 70- 99: llffg IkPvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 80- 109: ivdng IkPcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 70- 99: llyfg IrPvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 70- 99: llffr IrPifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 70- 99: llffr IrPifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 70- 99: llffr IrPifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 80- 109: midng IkPcyVFDGkPPdLKshELtkRsSRrvetE kklae I 9: 59.3119 9( 9) I-x(0,1)-P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 79- 108: mmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 70- 99: llffg IkPvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 80- 109: ivdng IkPcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 70- 99: llyfg IrPvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 70- 99: llffr IrPifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 70- 99: llffr IrPifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 70- 99: llffr IrPifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 80- 109: midng IkPcyVFDGkPPdLKshELtkRsSRrvetE kklae J 10: 58.8119 9( 9) I-x(0,1)-P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 79- 108: mmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 77- 106: rmeng IkPvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 70- 99: llffg IkPvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 80- 109: ivdng IkPcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 70- 99: llyfg IrPvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 70- 99: llffr IrPifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 70- 99: llffr IrPifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 70- 99: llffr IrPifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 80- 109: midng IkPcyVFDGkPPdLKshELtkRsSRrvetE kklae K 11: 56.6196 9( 9) G-[ILV]-P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 149- 166: llslm GIPYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 147- 164: llslm GIPYLdAPsEAEASCAaL akagk RA13_SCHPO : 769- 786: llrlf GLPYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 150- 167: llelm GIPFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 783- 800: llsrf GIPYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 780- 797: llrlf GIPYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 793- 810: llrlf GVPYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 813- 830: llqlf GIPYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 147- 164: llglm GIPYIiAPtEAEAQCAeL akkgk L 12: 55.6418 9( 9) P-x(2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 81- 108: engik PvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik PvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 72- 99: ffgik PvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 82- 109: dngik PcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 72- 99: yfgir PvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 72- 99: ffrir PifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 72- 99: ffrir PifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 72- 99: ffrir PifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 82- 109: dngik PcyVFDGkPPdLKshELtkRsSRrvetE kklae M 13: 55.2059 9( 9) P-x-[FY]-V-F-D-G-x(1,2)-P-x(1,2)-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 81- 108: engik PvYVFDGkpPq-LKsgELakRsERraeaE kqlqq FEN1_HUMAN : 81- 108: engik PvYVFDGk-PpqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik PvYVFDGkpPq-LKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik PvYVFDGk-PpqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 72- 99: ffgik PvFVFDGgaPs-LKrqTIqkRqARrldrE enatv RAD2_SCHPO : 82- 109: dngik PcFVFDGkpPt-LKsgELakRvARhqkaR edqee RAD2_SCHPO : 82- 109: dngik PcFVFDGk-PptLKsgELakRvARhqkaR edqee RAD2_YEAST : 72- 99: yfgir PvFVFDGgvPv-LKreTIrqRkERrqgkR esaks XPG_HUMAN : 72- 99: ffrir PiFVFDGdaPl-LKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 72- 99: ffrir PiFVFDGdaPl-LKkqTLakRrQRkdsaS idsrk XPG_XENLA : 72- 99: ffrir PiFVFDGeaPl-LKrqTLakRrQRtdkaS ndark YKL3_YEAST : 82- 109: dngik PcYVFDGkpPd-LKshELtkRsSRrvetE kklae YKL3_YEAST : 82- 109: dngik PcYVFDGk-PpdLKshELtkRsSRrvetE kklae N 14: 55.1418 9( 9) P-x(1,2)-V-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 81- 108: engik PvyVFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik PvyVFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 72- 99: ffgik PvfVFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 82- 109: dngik PcfVFDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 72- 99: yfgir PvfVFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 72- 99: ffrir PifVFDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 72- 99: ffrir PifVFDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 72- 99: ffrir PifVFDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 82- 109: dngik PcyVFDGkPPdLKshELtkRsSRrvetE kklae O 15: 53.6418 9( 9) P-x(0,2)-V-x(0,2)-F-D-G-x-[APV]-P-x-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 81- 108: engik PvyV--FDGkPPqLKsgELakRsERraeaE kqlqq FEN1_HUMAN : 81- 108: engik P--VyvFDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik PvyV--FDGkPPqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 79- 106: engik P--VyvFDGkPPqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 72- 99: ffgik PvfV--FDGgAPsLKrqTIqkRqARrldrE enatv RA13_SCHPO : 72- 99: ffgik P--VfvFDGgAPsLKrqTIqkRqARrldrE enatv RAD2_SCHPO : 82- 109: dngik PcfV--FDGkPPtLKsgELakRvARhqkaR edqee RAD2_YEAST : 72- 99: yfgir PvfV--FDGgVPvLKreTIrqRkERrqgkR esaks RAD2_YEAST : 72- 99: yfgir P--VfvFDGgVPvLKreTIrqRkERrqgkR esaks XPG_HUMAN : 72- 99: ffrir PifV--FDGdAPlLKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 72- 99: ffrir PifV--FDGdAPlLKkqTLakRrQRkdsaS idsrk XPG_XENLA : 72- 99: ffrir PifV--FDGeAPlLKrqTLakRrQRtdkaS ndark YKL3_YEAST : 82- 109: dngik PcyV--FDGkPPdLKshELtkRsSRrvetE kklae P 16: 49.7877 9( 9) P-[FY]-[ILV]-x-A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 151- 166: slmgi PYLdAPsEAEASCAaL vkagk FEN1_MOUSE : 149- 164: slmgi PYLdAPsEAEASCAaL akagk RA13_SCHPO : 771- 786: rlfgl PYIvAPqEAEAQCSkL lelkl RAD2_SCHPO : 152- 167: elmgi PFVnAPcEAEAQCAaL arsgk RAD2_YEAST : 785- 800: srfgi PYItAPmEAEAQCAeL lqlnl XPG_HUMAN : 782- 797: rlfgi PYIqAPmEAEAQCAiL dltdq XPG_MOUSE : 795- 810: rlfgv PYIqAPmEAEAQCAvL dlsdq XPG_XENLA : 815- 830: qlfgi PYIvAPmEAEAQCAiL dltdq YKL3_YEAST : 149- 164: glmgi PYIiAPtEAEAQCAeL akkgk Q 17: 47.8513 9( 9) V-F-D-G-x(1,2)-P-x(1,2)-L-K-x(2)-[ET]-[IL]-x(2)-R-x-[AEQS]-R-x(4)-[ERS] Occurences: 9(9) FEN1_HUMAN : 84- 108: ikpvy VFDGkpPq-LKsgELakRsERraeaE kqlqq FEN1_HUMAN : 84- 108: ikpvy VFDGk-PpqLKsgELakRsERraeaE kqlqq FEN1_MOUSE : 82- 106: ikpvy VFDGkpPq-LKsgELakRsERraeaE kqlqq FEN1_MOUSE : 82- 106: ikpvy VFDGk-PpqLKsgELakRsERraeaE kqlqq RA13_SCHPO : 75- 99: ikpvf VFDGgaPs-LKrqTIqkRqARrldrE enatv RAD2_SCHPO : 85- 109: ikpcf VFDGkpPt-LKsgELakRvARhqkaR edqee RAD2_SCHPO : 85- 109: ikpcf VFDGk-PptLKsgELakRvARhqkaR edqee RAD2_YEAST : 75- 99: irpvf VFDGgvPv-LKreTIrqRkERrqgkR esaks XPG_HUMAN : 75- 99: irpif VFDGdaPl-LKkqTLvkRrQRkdlaS sdsrk XPG_MOUSE : 75- 99: irpif VFDGdaPl-LKkqTLakRrQRkdsaS idsrk XPG_XENLA : 75- 99: irpif VFDGeaPl-LKrqTLakRrQRtdkaS ndark YKL3_YEAST : 85- 109: ikpcy VFDGkpPd-LKshELtkRsSRrvetE kklae YKL3_YEAST : 85- 109: ikpcy VFDGk-PpdLKshELtkRsSRrvetE kklae R 18: 39.7713 9( 9) A-P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 155- 166: ipyld APsEAEASCAaL vkagk FEN1_MOUSE : 153- 164: ipyld APsEAEASCAaL akagk RA13_SCHPO : 775- 786: lpyiv APqEAEAQCSkL lelkl RAD2_SCHPO : 156- 167: ipfvn APcEAEAQCAaL arsgk RAD2_YEAST : 789- 800: ipyit APmEAEAQCAeL lqlnl XPG_HUMAN : 786- 797: ipyiq APmEAEAQCAiL dltdq XPG_MOUSE : 799- 810: vpyiq APmEAEAQCAvL dlsdq XPG_XENLA : 819- 830: ipyiv APmEAEAQCAiL dltdq YKL3_YEAST : 153- 164: ipyii APtEAEAQCAeL akkgk S 19: 35.6013 9( 9) P-x-E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 156- 166: pylda PsEAEASCAaL vkagk FEN1_MOUSE : 154- 164: pylda PsEAEASCAaL akagk RA13_SCHPO : 776- 786: pyiva PqEAEAQCSkL lelkl RAD2_SCHPO : 157- 167: pfvna PcEAEAQCAaL arsgk RAD2_YEAST : 790- 800: pyita PmEAEAQCAeL lqlnl XPG_HUMAN : 787- 797: pyiqa PmEAEAQCAiL dltdq XPG_MOUSE : 800- 810: pyiqa PmEAEAQCAvL dlsdq XPG_XENLA : 820- 830: pyiva PmEAEAQCAiL dltdq YKL3_YEAST : 154- 164: pyiia PtEAEAQCAeL akkgk T 20: 31.4312 9( 9) E-A-E-A-[QS]-C-[AS]-x-L Occurences: 9(9) FEN1_HUMAN : 158- 166: ldaps EAEASCAaL vkagk FEN1_MOUSE : 156- 164: ldaps EAEASCAaL akagk RA13_SCHPO : 778- 786: ivapq EAEAQCSkL lelkl RAD2_SCHPO : 159- 167: vnapc EAEAQCAaL arsgk RAD2_YEAST : 792- 800: itapm EAEAQCAeL lqlnl XPG_HUMAN : 789- 797: iqapm EAEAQCAiL dltdq XPG_MOUSE : 802- 810: iqapm EAEAQCAvL dlsdq XPG_XENLA : 822- 830: ivapm EAEAQCAiL dltdq YKL3_YEAST : 156- 164: iiapt EAEAQCAeL akkgk Number of patterns evaluated by Pratt:27376 Total running time: 30 seconds