------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file XPA_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename XPA_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RA14_YEAST 247 XPA_CHICK 267 XPA_DROME 296 XPA_HUMAN 273 XPA_XENLA 267 Pratt run started at Thu Feb 6 21:34:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 5( 5) L-x-T-x-T-E-x-K-x(0,1)-E-x(0,1)-Y-x-L-x-D 2: 32.3604 5( 5) T-x-T-E-x-K-x(0,1)-E-x(0,1)-Y-x-L-x-D 3: 28.1904 5( 5) T-E-x-K-x(0,1)-E-x(0,1)-Y-x-L-x-D 4: 27.6904 7( 5) K-x(0,2)-K-x(2,3)-K-K-x-K-x(2)-R-x(3)-R 5: 27.6904 6( 5) L-x(1,2)-T-x(0,2)-E-x-K-x(2)-Y-x-L-x-D 6: 27.6904 5( 5) K-x(3)-L-x-K-x(1,2)-C-x(0,2)-D-x(5)-P-x-L 7: 24.5203 8( 5) K-x(2,3)-K-K-x-K-x(2)-R-x(3)-R 8: 24.0203 5( 5) E-x(1,2)-L-x(5)-K-x(0,1)-N-P-H 9: 24.0203 5( 5) L-x-D-x-D-x(3)-R-x(0,1)-E-x(0,1)-P 10: 24.0203 5( 5) E-x-K-x(0,1)-E-x(0,1)-Y-x-L-x-D 11: 24.0203 6( 5) L-x(0,1)-T-x-T-E-x-K-x(0,1)-E 12: 24.0203 5( 5) M-x(0,2)-D-x(2)-L-x(3)-F-x(4)-C-x(2)-C 13: 23.5203 5( 5) K-x(1,3)-E-x(2)-L-x(0,1)-D-x(5)-R-E 14: 23.5203 5( 5) E-x(0,2)-L-x-D-x-D-x(3)-R-x(0,1)-E 15: 23.5203 5( 5) K-x-E-x(1,3)-K-x(1,2)-D-x(5)-P-x-L 16: 23.5203 5( 5) E-x(0,1)-K-x(3)-L-x-K-x(3,5)-K-x(4)-L 17: 23.0203 5( 5) T-x(2,4)-E-x(0,2)-L-x-D-x-D-x(3)-R 18: 23.0203 5( 5) E-x(1,3)-K-x(3)-L-x-K-x(3,5)-K-x(4)-L 19: 23.0203 5( 5) E-x(4)-Y-x-L-x(0,2)-K-x(3,5)-K-x(4)-L 20: 20.8503 5( 5) K-K-x-K-x(2)-R-x(3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 107.1693 5( 5) E-x(1,2)-L-x-[FHY]-x(2)-[EKR]-K-x(0,1)-N-P-H-x(3)-[FW]-[AG]-[DER]-M-x-L-[FY]-[LV]-[HKR]-x-[EQ]-[IV]-x(3)-[AS]-[FL]-[EK]-x-W-G-[GNS]-[EQ]-E-[AEGS]-L-x-[ER]-x(2)-[EQ]-x-R B 2: 105.0437 6( 5) L-x(0,1)-T-[KR]-T-E-[AC]-K-x(0,1)-E-x(2)-[FL]-x(2)-[CD]-x(4)-[DKR]-E-[DP]-x-[FL]-[HKR]-x-[IL]-x-[KR]-x-N-P-H-x(3)-[FW]-[AG]-[DER]-M-x-L-[FY]-[LV]-[HKR]-x-[EQ]-[IV] C 3: 90.8190 5( 5) M-x(0,2)-D-[PS]-x-L-x-[DNQ]-x-F-x(3)-[TV]-C-[DK]-x-C-[RS]-[DK]-x-[DEH]-[DEP]-[EKR]-x(2)-[AL]-[IL]-x(3)-[ET]-[AE]-x(2)-E-x(2)-[FL]-x-[DT]-[CD]-[DP]-x(3)-[DR]-E-[DP] D 4: 77.3458 5( 5) L-[IL]-T-[KR]-T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] E 5: 69.8891 5( 5) T-[KR]-T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] F 6: 67.8156 6( 5) L-x(1,2)-T-x(0,2)-E-[AC]-K-[AEQ]-[DE]-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] G 7: 62.4709 5( 5) T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] H 8: 58.3008 5( 5) E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] I 9: 57.4859 5( 5) E-x(2)-[AEQ]-[EK]-Y-[AL]-L-x(0,2)-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] J 10: 54.7103 5( 5) K-x(1,3)-E-x-[GL]-L-x(0,1)-D-x-[DE]-x-[DEQ]-[KR]-R-E-[EP]-x(3)-[FHY]-x(2)-[EKR]-K-x(2)-[EH]-x(4)-[EG] K 11: 52.1556 5( 5) E-x(0,1)-K-x-[AE]-x-L-x-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] L 12: 51.6556 5( 5) E-x(1,3)-K-x-[AE]-x-L-x-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] M 13: 50.1621 7( 5) K-x(0,2)-K-x(2,3)-K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] N 14: 46.9921 8( 5) K-x(2,3)-K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] O 15: 43.3220 5( 5) K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] P 16: 42.3926 5( 5) L-x-D-x-D-[FIL]-x-[HK]-R-x(0,1)-E-x(0,1)-P-x-[LP]-[HKR]-x-[GI]-x(3)-[NR] Q 17: 35.4028 5( 5) T-x(2,4)-E-x(0,2)-L-x-D-x-D-[FIL]-x-[HK]-R-x-[EP]-x-[LP] R 18: 35.3792 5( 5) E-x(0,2)-L-x-D-x-D-[FIL]-x-[HK]-R-x(0,1)-E-x(4)-[FHY]-x(4)-[AN] S 19: 34.0863 5( 5) K-x-[AE]-x-L-x-K-x(1,2)-C-x(0,2)-D-x(4)-[DE]-P-x-L T 20: 28.9277 5( 5) K-[AEQT]-E-x(1,3)-K-x(1,2)-D-x(4)-[DE]-P-x-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 107.1693 5( 5) E-x(1,2)-L-x-[FHY]-x(2)-[EKR]-K-x(0,1)-N-P-H-x(3)-[FW]-[AG]-[DER]-M-x-L-[FY]-[LV]-[HKR]-x-[EQ]-[IV]-x(3)-[AS]-[FL]-[EK]-x-W-G-[GNS]-[EQ]-E-[AEGS]-L-x-[ER]-x(2)-[EQ]-x-R Occurences: 5(5) RA14_YEAST : 122- 170: pelnd Ed-LfHrlEKpNPHsgtFARMqLFVRcEVeafAFKkWGGEEGLdEewQrR eegka XPA_CHICK : 153- 201: dldkr EpvLrFivKK-NPHnprWGDMkLYLKlQVikrALEvWGNEESLqEakEqR rdsre XPA_DROME : 180- 228: dfdkr EpkLrYisRK-NPHnvrWGEMkLYLHlQIhqrALEvWGSEEELvRheQaR edkre XPA_HUMAN : 159- 207: dlekr EppLkFivKK-NPHhsqWGDMkLYLKlQIvkrSLEvWGSQEALeEakEvR qenre XPA_XENLA : 153- 201: didkr EpvLkFilKK-NPHnthWGDMkLYLKaQVikrSLEvWGSEEALeEakEvR kdnrd B 2: 105.0437 6( 5) L-x(0,1)-T-[KR]-T-E-[AC]-K-x(0,1)-E-x(2)-[FL]-x(2)-[CD]-x(4)-[DKR]-E-[DP]-x-[FL]-[HKR]-x-[IL]-x-[KR]-x-N-P-H-x(3)-[FW]-[AG]-[DER]-M-x-L-[FY]-[LV]-[HKR]-x-[EQ]-[IV] Occurences: 6(5) RA14_YEAST : 102- 149: pekya LlTKTECK-EdyFltDpelnDEDlFHrLeKpNPHsgtFARMqLFVRcEV eafaf RA14_YEAST : 103- 149: ekyal L-TKTECK-EdyFltDpelnDEDlFHrLeKpNPHsgtFARMqLFVRcEV eafaf XPA_CHICK : 132- 180: edkhk LiTRTEAKeEylLkdCdldkREPvLRfIvKkNPHnprWGDMkLYLKlQV ikral XPA_DROME : 159- 207: derya LiTRTEAKaEylLkdCdfdkREPkLRyIsRkNPHnvrWGEMkLYLHlQI hqral XPA_HUMAN : 138- 186: ddkhk LiTKTEAKqEylLkdCdlekREPpLKfIvKkNPHhsqWGDMkLYLKlQI vkrsl XPA_XENLA : 132- 180: eekhk LiTRTEAKqEylLkdCdidkREPvLKfIlKkNPHnthWGDMkLYLKaQV ikrsl C 3: 90.8190 5( 5) M-x(0,2)-D-[PS]-x-L-x-[DNQ]-x-F-x(3)-[TV]-C-[DK]-x-C-[RS]-[DK]-x-[DEH]-[DEP]-[EKR]-x(2)-[AL]-[IL]-x(3)-[ET]-[AE]-x(2)-E-x(2)-[FL]-x-[DT]-[CD]-[DP]-x(3)-[DR]-E-[DP] Occurences: 5(5) RA14_YEAST : 76- 123: hinie M--DPvLhDvFklqVCKqCSKeHPEkyALltkTEckEdyFlTDPelnDED lfhrl XPA_CHICK : 107- 154: cgkef M--DSyLmQhFdwaTCDnCRDaEDKhkLItrtEAkeEylLkDCDldkREP vlrfi XPA_DROME : 132- 181: lecgd MfaDSyLfNnFghsVCDkCRDkDERyaLItrtEAkaEylLkDCDfdkREP klryi XPA_HUMAN : 113- 160: cgkef M--DSyLmNhFdlpTCDnCRDaDDKhkLItktEAkqEylLkDCDlekREP plkfi XPA_XENLA : 107- 154: cgkdf M--DSyLsNhFdlaVCDsCRDaEEKhkLItrtEAkqEylLkDCDidkREP vlkfi D 4: 77.3458 5( 5) L-[IL]-T-[KR]-T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] Occurences: 5(5) RA14_YEAST : 102- 127: pekya LLTKTECK-EdYFLtDPELNDEDLfhR lekpn XPA_CHICK : 132- 157: edkhk LITRTEAKeE-YLLkDCDLDKREPvlR fivkk XPA_CHICK : 132- 157: edkhk LITRTEAK-EeYLLkDCDLDKREPvlR fivkk XPA_DROME : 159- 184: derya LITRTEAKaE-YLLkDCDFDKREPklR yisrk XPA_HUMAN : 138- 163: ddkhk LITKTEAKqE-YLLkDCDLEKREPplK fivkk XPA_XENLA : 132- 157: eekhk LITRTEAKqE-YLLkDCDIDKREPvlK filkk E 5: 69.8891 5( 5) T-[KR]-T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] Occurences: 5(5) RA14_YEAST : 104- 127: kyall TKTECK-EdYFLtDPELNDEDLfhR lekpn XPA_CHICK : 134- 157: khkli TRTEAKeE-YLLkDCDLDKREPvlR fivkk XPA_CHICK : 134- 157: khkli TRTEAK-EeYLLkDCDLDKREPvlR fivkk XPA_DROME : 161- 184: ryali TRTEAKaE-YLLkDCDFDKREPklR yisrk XPA_HUMAN : 140- 163: khkli TKTEAKqE-YLLkDCDLEKREPplK fivkk XPA_XENLA : 134- 157: khkli TRTEAKqE-YLLkDCDIDKREPvlK filkk F 6: 67.8156 6( 5) L-x(1,2)-T-x(0,2)-E-[AC]-K-[AEQ]-[DE]-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] Occurences: 6(5) RA14_YEAST : 102- 127: pekya Ll-TktECKEDYFLtDPELNDEDLfhR lekpn RA14_YEAST : 103- 127: ekyal LtkT--ECKEDYFLtDPELNDEDLfhR lekpn XPA_CHICK : 132- 157: edkhk Li-TrtEAKEEYLLkDCDLDKREPvlR fivkk XPA_DROME : 159- 184: derya Li-TrtEAKAEYLLkDCDFDKREPklR yisrk XPA_HUMAN : 138- 163: ddkhk Li-TktEAKQEYLLkDCDLEKREPplK fivkk XPA_XENLA : 132- 157: eekhk Li-TrtEAKQEYLLkDCDIDKREPvlK filkk G 7: 62.4709 5( 5) T-E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] Occurences: 5(5) RA14_YEAST : 106- 127: alltk TECK-EdYFLtDPELNDEDLfhR lekpn XPA_CHICK : 136- 157: klitr TEAKeE-YLLkDCDLDKREPvlR fivkk XPA_CHICK : 136- 157: klitr TEAK-EeYLLkDCDLDKREPvlR fivkk XPA_DROME : 163- 184: alitr TEAKaE-YLLkDCDFDKREPklR yisrk XPA_HUMAN : 142- 163: klitk TEAKqE-YLLkDCDLEKREPplK fivkk XPA_XENLA : 136- 157: klitr TEAKqE-YLLkDCDIDKREPvlK filkk H 8: 58.3008 5( 5) E-[AC]-K-x(0,1)-E-x(0,1)-Y-[FL]-L-x-D-[CP]-[DE]-[FIL]-[DEN]-[DK]-[ER]-[DE]-[LP]-x(2)-[KR] Occurences: 5(5) RA14_YEAST : 107- 127: lltkt ECK-EdYFLtDPELNDEDLfhR lekpn XPA_CHICK : 137- 157: litrt EAKeE-YLLkDCDLDKREPvlR fivkk XPA_CHICK : 137- 157: litrt EAK-EeYLLkDCDLDKREPvlR fivkk XPA_DROME : 164- 184: litrt EAKaE-YLLkDCDFDKREPklR yisrk XPA_HUMAN : 143- 163: litkt EAKqE-YLLkDCDLEKREPplK fivkk XPA_XENLA : 137- 157: litrt EAKqE-YLLkDCDIDKREPvlK filkk I 9: 57.4859 5( 5) E-x(2)-[AEQ]-[EK]-Y-[AL]-L-x(0,2)-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] Occurences: 5(5) RA14_YEAST : 95- 129: kqcsk EhpEKYALltKtec--KEDyfLtdPelnDEDlfhrLE kpnph XPA_CHICK : 137- 171: litrt EakEEYLL--KdcdldKREpvLrfIvkkNPHnprwGD mklyl XPA_DROME : 164- 198: litrt EakAEYLL--KdcdfdKREpkLryIsrkNPHnvrwGE mklyl XPA_HUMAN : 143- 177: litkt EakQEYLL--KdcdleKREppLkfIvkkNPHhsqwGD mklyl XPA_XENLA : 137- 171: litrt EakQEYLL--KdcdidKREpvLkfIlkkNPHnthwGD mklyl J 10: 54.7103 5( 5) K-x(1,3)-E-x-[GL]-L-x(0,1)-D-x-[DE]-x-[DEQ]-[KR]-R-E-[EP]-x(3)-[FHY]-x(2)-[EKR]-K-x(2)-[EH]-x(4)-[EG] Occurences: 5(5) RA14_YEAST : 156- 188: afafk KwggEeGL-DeEwQRREEgkaHrrEKkyEkkikE mrlkt XPA_CHICK : 139- 170: trtea Ke--EyLLkDcDlDKREPvlrFivKKnpHnprwG dmkly XPA_DROME : 166- 197: trtea Ka--EyLLkDcDfDKREPklrYisRKnpHnvrwG emkly XPA_HUMAN : 145- 176: tktea Kq--EyLLkDcDlEKREPplkFivKKnpHhsqwG dmkly XPA_XENLA : 139- 170: trtea Kq--EyLLkDcDiDKREPvlkFilKKnpHnthwG dmkly K 11: 52.1556 5( 5) E-x(0,1)-K-x-[AE]-x-L-x-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] Occurences: 5(5) RA14_YEAST : 98- 129: skehp E-KyAlLtKtec--KEDyfLtdPelnDEDlfhrLE kpnph XPA_CHICK : 137- 171: litrt EaKeEyLlKdcdldKREpvLrfIvkkNPHnprwGD mklyl XPA_DROME : 164- 198: litrt EaKaEyLlKdcdfdKREpkLryIsrkNPHnvrwGE mklyl XPA_HUMAN : 143- 177: litkt EaKqEyLlKdcdleKREppLkfIvkkNPHhsqwGD mklyl XPA_XENLA : 137- 171: litrt EaKqEyLlKdcdidKREpvLkfIlkkNPHnthwGD mklyl L 12: 51.6556 5( 5) E-x(1,3)-K-x-[AE]-x-L-x-K-x(3,5)-K-[ER]-[DE]-x(2)-L-x(2)-[IP]-x(3)-[DN]-[EP]-[DH]-x(4)-[GL]-[DE] Occurences: 5(5) RA14_YEAST : 95- 129: kqcsk EhpeKyAlLtKtec--KEDyfLtdPelnDEDlfhrLE kpnph XPA_CHICK : 137- 171: litrt Ea--KeEyLlKdcdldKREpvLrfIvkkNPHnprwGD mklyl XPA_DROME : 164- 198: litrt Ea--KaEyLlKdcdfdKREpkLryIsrkNPHnvrwGE mklyl XPA_HUMAN : 143- 177: litkt Ea--KqEyLlKdcdleKREppLkfIvkkNPHhsqwGD mklyl XPA_XENLA : 137- 171: litrt Ea--KqEyLlKdcdidKREpvLkfIlkkNPHnthwGD mklyl M 13: 50.1621 7( 5) K-x(0,2)-K-x(2,3)-K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] Occurences: 7(5) RA14_YEAST : 180- 198: ahrre K--Kye-KKIKEMRlkTRAQeY tnrlr XPA_CHICK : 209- 229: srekm Kq-KrfdKKVKELRraVRSSlW kktas XPA_DROME : 236- 256: kreeg KarKyn-KKMKQLRmeVRSSiY tkkth XPA_HUMAN : 215- 235: nrekm KqkKfd-KKVKELRraVRSSvW kreti XPA_HUMAN : 215- 235: nrekm Kq-KkfdKKVKELRraVRSSvW kreti XPA_HUMAN : 217- 235: ekmkq K--Kfd-KKVKELRraVRSSvW kreti XPA_XENLA : 209- 229: nrdkm KqkKfd-KKVKELRrtVRSSlW kkeas XPA_XENLA : 209- 229: nrdkm Kq-KkfdKKVKELRrtVRSSlW kkeas XPA_XENLA : 211- 229: dkmkq K--Kfd-KKVKELRrtVRSSlW kkeas N 14: 46.9921 8( 5) K-x(2,3)-K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] Occurences: 8(5) RA14_YEAST : 180- 198: ahrre KkyeKKIKEMRlkTRAQeY tnrlr RA14_YEAST : 181- 198: hrrek Kye-KKIKEMRlkTRAQeY tnrlr XPA_CHICK : 211- 229: ekmkq KrfdKKVKELRraVRSSlW kktas XPA_DROME : 239- 256: egkar Kyn-KKMKQLRmeVRSSiY tkkth XPA_HUMAN : 217- 235: ekmkq KkfdKKVKELRraVRSSvW kreti XPA_HUMAN : 218- 235: kmkqk Kfd-KKVKELRraVRSSvW kreti XPA_XENLA : 211- 229: dkmkq KkfdKKVKELRrtVRSSlW kkeas XPA_XENLA : 212- 229: kmkqk Kfd-KKVKELRrtVRSSlW kkeas O 15: 43.3220 5( 5) K-K-[IMV]-K-[EQ]-[LM]-R-x(2)-[TV]-R-[AS]-[QS]-x-[WY] Occurences: 5(5) RA14_YEAST : 184- 198: ekkye KKIKEMRlkTRAQeY tnrlr XPA_CHICK : 215- 229: qkrfd KKVKELRraVRSSlW kktas XPA_DROME : 242- 256: arkyn KKMKQLRmeVRSSiY tkkth XPA_HUMAN : 221- 235: qkkfd KKVKELRraVRSSvW kreti XPA_XENLA : 215- 229: qkkfd KKVKELRrtVRSSlW kkeas P 16: 42.3926 5( 5) L-x-D-x-D-[FIL]-x-[HK]-R-x(0,1)-E-x(0,1)-P-x-[LP]-[HKR]-x-[GI]-x(3)-[NR] Occurences: 5(5) RA14_YEAST : 119- 140: ltdpe LnDeDLfHRlEkPnPHsGtfaR mqlfv XPA_CHICK : 144- 163: keeyl LkDcDLdKR-E-PvLRfIvkkN phnpr XPA_DROME : 171- 190: kaeyl LkDcDFdKR-E-PkLRyIsrkN phnvr XPA_HUMAN : 150- 169: kqeyl LkDcDLeKR-E-PpLKfIvkkN phhsq XPA_XENLA : 144- 163: kqeyl LkDcDIdKR-E-PvLKfIlkkN phnth Q 17: 35.4028 5( 5) T-x(2,4)-E-x(0,2)-L-x-D-x-D-[FIL]-x-[HK]-R-x-[EP]-x-[LP] Occurences: 5(5) RA14_YEAST : 115- 131: edyfl Tdp--E--LnDeDLfHRlEkP nphsg XPA_CHICK : 136- 156: klitr TeakeEylLkDcDLdKRePvL rfivk XPA_DROME : 163- 183: alitr TeakaEylLkDcDFdKRePkL ryisr XPA_HUMAN : 142- 162: klitk TeakqEylLkDcDLeKRePpL kfivk XPA_XENLA : 136- 156: klitr TeakqEylLkDcDIdKRePvL kfilk R 18: 35.3792 5( 5) E-x(0,2)-L-x-D-x-D-[FIL]-x-[HK]-R-x(0,1)-E-x(4)-[FHY]-x(4)-[AN] Occurences: 5(5) RA14_YEAST : 118- 139: fltdp E--LnDeDLfHRlEkpnpHsgtfA rmqlf XPA_CHICK : 141- 163: teake EylLkDcDLdKR-EpvlrFivkkN phnpr XPA_DROME : 168- 190: teaka EylLkDcDFdKR-EpklrYisrkN phnvr XPA_HUMAN : 147- 169: teakq EylLkDcDLeKR-EpplkFivkkN phhsq XPA_XENLA : 141- 163: teakq EylLkDcDIdKR-EpvlkFilkkN phnth S 19: 34.0863 5( 5) K-x-[AE]-x-L-x-K-x(1,2)-C-x(0,2)-D-x(4)-[DE]-P-x-L Occurences: 5(5) RA14_YEAST : 99- 119: kehpe KyAlLtKteCkeDyfltDPeL ndedl XPA_CHICK : 139- 156: trtea KeEyLlKd-C--DldkrEPvL rfivk XPA_DROME : 166- 183: trtea KaEyLlKd-C--DfdkrEPkL ryisr XPA_HUMAN : 145- 162: tktea KqEyLlKd-C--DlekrEPpL kfivk XPA_XENLA : 139- 156: trtea KqEyLlKd-C--DidkrEPvL kfilk T 20: 28.9277 5( 5) K-[AEQT]-E-x(1,3)-K-x(1,2)-D-x(4)-[DE]-P-x-L Occurences: 5(5) RA14_YEAST : 105- 119: yallt KTEc--Ke-DyfltDPeL ndedl XPA_CHICK : 139- 156: trtea KEEyllKdcDldkrEPvL rfivk XPA_DROME : 166- 183: trtea KAEyllKdcDfdkrEPkL ryisr XPA_HUMAN : 145- 162: tktea KQEyllKdcDlekrEPpL kfivk XPA_XENLA : 139- 156: trtea KQEyllKdcDidkrEPvL kfilk Number of patterns evaluated by Pratt:6341 Total running time: 2 seconds