------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file XANTH_URACIL_PERMASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename XANTH_URACIL_PERMASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PBUX_BACSU 438 PYRP_BACCL 432 PYRP_BACSU 434 UAPA_EMENI 595 URAA_ECOLI 429 URAA_HAEIN 414 YICE_ECOLI 463 Pratt run started at Thu Feb 6 21:34:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 7( 7) P-x(2)-V-x-G-G 2: 16.6802 8( 7) G-x(5)-I-G-x(2)-L 3: 16.1802 9( 7) I-x(0,1)-P-x(2)-V-x-G 4: 16.1802 8( 7) A-x(5)-P-x(1,2)-V-x-G 5: 16.1802 9( 7) P-x(3)-G-x(5)-I-x(2,3)-L 6: 16.1802 9( 7) V-x(2,3)-I-G-x(2)-L 7: 16.1802 7( 7) G-x(4,5)-I-x-G-x(2)-L 8: 15.6802 7( 7) S-x(2,3)-I-x(3,4)-A-x(2)-A 9: 15.6802 8( 7) S-x(2,4)-I-x(3)-A-x(2)-A 10: 15.6802 7( 7) L-V-x(0,2)-S-x(2)-V 11: 15.6802 9( 7) V-x(0,1)-G-x(2,3)-L-x(2)-I 12: 15.6802 7( 7) L-L-x(0,1)-G-x(2,3)-A 13: 15.6802 11( 7) L-x(2,3)-I-x(2)-G-x(2,3)-A 14: 15.6802 10( 7) L-x(1,2)-I-x(2)-G-x(2,3)-A 15: 15.6802 9( 7) V-I-x(3,4)-G-x(3,4)-A 16: 15.6802 16( 7) P-x(1,2)-V-x-G-x(1,2)-V 17: 15.6802 9( 7) P-x(0,1)-V-x-G-x(1,2)-V 18: 15.6802 8( 7) A-x(5)-P-x(1,2)-V-x(1,2)-G 19: 15.6802 7( 7) G-x(0,1)-G-x(0,1)-T-L 20: 15.6802 8( 7) L-x(3,4)-G-x(0,1)-V-x(3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 48.9746 7( 7) P-x(2)-V-[LM]-G-G-x(4)-[LMV]-[FY]-[AG]-x-[IV]-[AGIV]-x(2)-G-x(3)-[LV]-x-[DEKR]-x(2)-[FILV]-[ADNT] B 2: 45.4076 7( 7) P-x(2)-V-x-G-G-x(4)-[LMV]-[FY]-[AG]-x-[IV]-[AGIV]-x(2)-G-x(3)-[LV]-x-[DEKR]-x(2)-[FILV]-[ADNT] C 3: 44.4417 8( 7) I-x(0,1)-P-x-[AIPV]-V-x-G-[GP]-x(2)-[ILMV]-[ALV]-[ILMV]-x-[GIL]-x-[ILV]-[AGI]-[AGSV]-x-[AG]-[FILMV] D 4: 35.5191 7( 7) A-x(5)-P-x(1,2)-V-x-G-[GPV]-x(4)-[ILMV]-x-[AGL]-x-[ILV]-[AGIV]-x(2)-G-x(3)-[ILV] E 5: 34.9642 7( 7) A-x(5)-P-x(1,2)-V-x-G-[GV]-x(4)-[FILMV]-x-[AGIL]-x-[AILV]-[AGIV]-x(2)-G-x(3)-[ILV] F 6: 30.8299 7( 7) G-x(2)-[IV]-x-[ILV]-I-G-[ILM]-[EGST]-L-x(3)-[AG] G 7: 29.4346 13( 7) P-x(1,2)-V-x-G-x(1,2)-V-x-[IL]-[ILV]-[GIL]-x(2)-[GILV]-[ILM] H 8: 29.4346 8( 7) P-x(0,1)-V-x-G-x(1,2)-V-x-[IL]-[ILV]-[GIL]-x(2)-[GILV]-[ILM] I 9: 28.2771 7( 7) P-[AILV]-x(2)-G-x-[STV]-x(2)-[FILV]-I-x(2,3)-L-x(3)-[AGP]-[FLMV] J 10: 24.4432 9( 7) V-x(2,3)-I-G-[ILM]-[EGST]-L-x(3)-[AG] K 11: 18.8487 7( 7) G-x(4,5)-I-x-G-x(2)-L-x(2)-[GIV] L 12: 17.9225 7( 7) L-V-x(0,2)-S-x-[AGIV]-V M 13: 17.5632 8( 7) S-x(2,4)-I-[AEGST]-x(2)-A-x(2)-A N 14: 15.6802 7( 7) S-x(2,3)-I-x(3,4)-A-x(2)-A O 15: 15.6802 9( 7) V-x(0,1)-G-x(2,3)-L-x(2)-I P 16: 15.6802 7( 7) L-L-x(0,1)-G-x(2,3)-A Q 17: 15.6802 11( 7) L-x(2,3)-I-x(2)-G-x(2,3)-A R 18: 15.6802 10( 7) L-x(1,2)-I-x(2)-G-x(2,3)-A S 19: 15.6802 9( 7) V-I-x(3,4)-G-x(3,4)-A T 20: 15.6802 16( 7) P-x(1,2)-V-x-G-x(1,2)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 48.9746 7( 7) P-x(2)-V-[LM]-G-G-x(4)-[LMV]-[FY]-[AG]-x-[IV]-[AGIV]-x(2)-G-x(3)-[LV]-x-[DEKR]-x(2)-[FILV]-[ADNT] Occurences: 7(7) PBUX_BACSU : 333- 362: fttii PsaVLGGamvaMFGmVIayGikmLsRidFA kqenl PYRP_BACCL : 335- 364: lissi PtpVMGGvsilLFGiIAssGlrmLiDsrVD fgqtr PYRP_BACSU : 340- 369: lissv PsaVMGGvsflLFGiIAssGlrmLiDnkID yennr UAPA_EMENI : 469- 498: aivai PnsVMGGmktfLFAsVVisGqaiVaKapFT rrnrf URAA_ECOLI : 330- 359: aiqmi PlpVMGGvsllLYGvIGasGirvLiEskVD ynkaq URAA_HAEIN : 330- 359: flsti PtiVMGGimmlVFGsIAvvGmstLiRgkVD vtear YICE_ECOLI : 376- 405: fvqhi PepVLGGatlvMFGtIAasGvriVsRepLN rrail B 2: 45.4076 7( 7) P-x(2)-V-x-G-G-x(4)-[LMV]-[FY]-[AG]-x-[IV]-[AGIV]-x(2)-G-x(3)-[LV]-x-[DEKR]-x(2)-[FILV]-[ADNT] Occurences: 7(7) PBUX_BACSU : 333- 362: fttii PsaVlGGamvaMFGmVIayGikmLsRidFA kqenl PYRP_BACCL : 335- 364: lissi PtpVmGGvsilLFGiIAssGlrmLiDsrVD fgqtr PYRP_BACSU : 340- 369: lissv PsaVmGGvsflLFGiIAssGlrmLiDnkID yennr UAPA_EMENI : 469- 498: aivai PnsVmGGmktfLFAsVVisGqaiVaKapFT rrnrf URAA_ECOLI : 330- 359: aiqmi PlpVmGGvsllLYGvIGasGirvLiEskVD ynkaq URAA_HAEIN : 330- 359: flsti PtiVmGGimmlVFGsIAvvGmstLiRgkVD vtear YICE_ECOLI : 376- 405: fvqhi PepVlGGatlvMFGtIAasGvriVsRepLN rrail C 3: 44.4417 8( 7) I-x(0,1)-P-x-[AIPV]-V-x-G-[GP]-x(2)-[ILMV]-[ALV]-[ILMV]-x-[GIL]-x-[ILV]-[AGI]-[AGSV]-x-[AG]-[FILMV] Occurences: 8(7) PBUX_BACSU : 331- 353: aaftt IiPsAVlGGamVAMfGmVIAyGI kmlsr PBUX_BACSU : 332- 353: aftti I-PsAVlGGamVAMfGmVIAyGI kmlsr PYRP_BACCL : 334- 355: aliss I-PtPVmGGvsILLfGiIASsGL rmlid PYRP_BACSU : 122- 144: gwlmk IlPpVVvGPviIVIgLgLAStAV nmamy UAPA_EMENI : 238- 260: kviqk IfPpIVtGPtvMLIgIsLIGtGF kdwag URAA_ECOLI : 329- 350: aaiqm I-PlPVmGGvsLLLyGvIGAsGI rvlie URAA_HAEIN : 329- 350: aflst I-PtIVmGGimMLVfGsIAVvGM stlir YICE_ECOLI : 375- 396: gfvqh I-PePVlGGatLVMfGtIAAsGV rivsr D 4: 35.5191 7( 7) A-x(5)-P-x(1,2)-V-x-G-[GPV]-x(4)-[ILMV]-x-[AGL]-x-[ILV]-[AGIV]-x(2)-G-x(3)-[ILV] Occurences: 7(7) PBUX_BACSU : 327- 356: fpkia AfttiiPsaVlGGamvaMfGmVIayGikmL sridf PYRP_BACCL : 329- 358: vgkit AlissiPtpVmGGvsilLfGiIAssGlrmL idsrv PYRP_BACSU : 334- 363: igkis AlissvPsaVmGGvsflLfGiIAssGlrmL idnki UAPA_EMENI : 463- 492: fakfa AaivaiPnsVmGGmktfLfAsVVisGqaiV akapf URAA_ECOLI : 324- 353: vgkla AaiqmiPlpVmGGvsllLyGvIGasGirvL ieskv URAA_HAEIN : 324- 353: cgkvg AflstiPtiVmGGimmlVfGsIAvvGmstL irgkv YICE_ECOLI : 153- 181: rvlhl ArriitPl-VsGVvvmiIgLsLIqvGltsI gggya E 5: 34.9642 7( 7) A-x(5)-P-x(1,2)-V-x-G-[GV]-x(4)-[FILMV]-x-[AGIL]-x-[AILV]-[AGIV]-x(2)-G-x(3)-[ILV] Occurences: 7(7) PBUX_BACSU : 327- 356: fpkia AfttiiPsaVlGGamvaMfGmVIayGikmL sridf PYRP_BACCL : 329- 358: vgkit AlissiPtpVmGGvsilLfGiIAssGlrmL idsrv PYRP_BACSU : 334- 363: igkis AlissvPsaVmGGvsflLfGiIAssGlrmL idnki UAPA_EMENI : 463- 492: fakfa AaivaiPnsVmGGmktfLfAsVVisGqaiV akapf URAA_ECOLI : 324- 353: vgkla AaiqmiPlpVmGGvsllLyGvIGasGirvL ieskv URAA_HAEIN : 324- 353: cgkvg AflstiPtiVmGGimmlVfGsIAvvGmstL irgkv YICE_ECOLI : 153- 181: rvlhl ArriitPl-VsGVvvmiIgLsLIqvGltsI gggya F 6: 30.8299 7( 7) G-x(2)-[IV]-x-[ILV]-I-G-[ILM]-[EGST]-L-x(3)-[AG] Occurences: 7(7) PBUX_BACSU : 127- 141: ppvvt GsvVtIIGITLmpvA mnnma PYRP_BACCL : 127- 141: ppvvv GpvIiVIGLGLagtA vgmam PYRP_BACSU : 129- 143: ppvvv GpvIiVIGLGLastA vnmam UAPA_EMENI : 245- 259: ppivt GptVmLIGISLigtG fkdwa URAA_ECOLI : 126- 140: ppaam GaiVaVIGLELagvA agmag URAA_HAEIN : 128- 142: ppvvv GpvIiIIGMGLapiA vdmsl YICE_ECOLI : 163- 177: tplvs GvvVmIIGLSLiqvG ltsig G 7: 29.4346 13( 7) P-x(1,2)-V-x-G-x(1,2)-V-x-[IL]-[ILV]-[GIL]-x(2)-[GILV]-[ILM] Occurences: 13(7) PBUX_BACSU : 122- 138: lvsff PpvVtGsvVtIIGitLM pvamn PBUX_BACSU : 123- 138: vsffp Pv-VtGsvVtIIGitLM pvamn PYRP_BACCL : 122- 137: vmkll PpvVvGp-ViIVIglGL agtav PYRP_BACCL : 123- 137: mkllp Pv-VvGp-ViIVIglGL agtav PYRP_BACCL : 335- 350: lissi PtpVmGg-VsILLfgII assgl PYRP_BACSU : 124- 139: lmkil PpvVvGp-ViIVIglGL astav PYRP_BACSU : 125- 139: mkilp Pv-VvGp-ViIVIglGL astav UAPA_EMENI : 240- 256: iqkif PpiVtGptVmLIGisLI gtgfk UAPA_EMENI : 241- 256: qkifp Pi-VtGptVmLIGisLI gtgfk URAA_ECOLI : 330- 345: aiqmi PlpVmGg-VsLLLygVI gasgi URAA_HAEIN : 123- 138: lqrff PpvVvGp-ViIIIgmGL apiav URAA_HAEIN : 124- 138: qrffp Pv-VvGp-ViIIIgmGL apiav YICE_ECOLI : 159- 174: rriit Pl-VsGvvVmIIGlsLI qvglt H 8: 29.4346 8( 7) P-x(0,1)-V-x-G-x(1,2)-V-x-[IL]-[ILV]-[GIL]-x(2)-[GILV]-[ILM] Occurences: 8(7) PBUX_BACSU : 123- 138: vsffp PvVtGsvVtIIGitLM pvamn PYRP_BACCL : 123- 137: mkllp PvVvGp-ViIVIglGL agtav PYRP_BACCL : 337- 350: ssipt P-VmGg-VsILLfgII assgl PYRP_BACSU : 125- 139: mkilp PvVvGp-ViIVIglGL astav UAPA_EMENI : 241- 256: qkifp PiVtGptVmLIGisLI gtgfk URAA_ECOLI : 332- 345: qmipl P-VmGg-VsLLLygVI gasgi URAA_HAEIN : 124- 138: qrffp PvVvGp-ViIIIgmGL apiav YICE_ECOLI : 159- 174: rriit PlVsGvvVmIIGlsLI qvglt I 9: 28.2771 7( 7) P-[AILV]-x(2)-G-x-[STV]-x(2)-[FILV]-I-x(2,3)-L-x(3)-[AGP]-[FLMV] Occurences: 7(7) PBUX_BACSU : 123- 142: vsffp PVvtGsVvtIIgitLmpvAM nnmag PYRP_BACCL : 123- 142: mkllp PVvvGpViiVIglgLagtAV gmamn PYRP_BACSU : 125- 144: mkilp PVvvGpViiVIglgLastAV nmamy UAPA_EMENI : 241- 260: qkifp PIvtGpTvmLIgisLigtGF kdwag URAA_ECOLI : 66- 85: ckgki PAylGsSfaFIspvLlllPL gyeva URAA_HAEIN : 124- 143: qrffp PVvvGpViiIIgmgLapiAV dmslg YICE_ECOLI : 159- 178: rriit PLvsGvVvmIIglsLiqvGL tsigg J 10: 24.4432 9( 7) V-x(2,3)-I-G-[ILM]-[EGST]-L-x(3)-[AG] Occurences: 9(7) PBUX_BACSU : 129- 141: vvtgs VvtiIGITLmpvA mnnma PBUX_BACSU : 130- 141: vtgsv Vti-IGITLmpvA mnnma PYRP_BACCL : 129- 141: vvvgp ViivIGLGLagtA vgmam PYRP_BACSU : 131- 143: vvvgp ViivIGLGLastA vnmam UAPA_EMENI : 248- 259: vtgpt Vml-IGISLigtG fkdwa URAA_ECOLI : 129- 140: amgai Vav-IGLELagvA agmag URAA_HAEIN : 130- 142: vvvgp ViiiIGMGLapiA vdmsl YICE_ECOLI : 165- 177: lvsgv VvmiIGLSLiqvG ltsig YICE_ECOLI : 166- 177: vsgvv Vmi-IGLSLiqvG ltsig K 11: 18.8487 7( 7) G-x(4,5)-I-x-G-x(2)-L-x(2)-[GIV] Occurences: 7(7) PBUX_BACSU : 127- 140: ppvvt Gsvvt-IiGitLmpV amnnm PYRP_BACCL : 397- 411: sfqit GmalsaIvGvlLnlI lpgrp PYRP_BACSU : 403- 417: gfqvs GmalaaIvGviLnlI lpqak UAPA_EMENI : 396- 410: levrg GtfesrIqGavLadG tnsvv URAA_ECOLI : 391- 405: aaelk GmalatIvGigLslI fklis URAA_HAEIN : 128- 141: ppvvv Gpvii-IiGmgLapI avdms YICE_ECOLI : 163- 176: tplvs Gvvvm-IiGlsLiqV gltsi L 12: 17.9225 7( 7) L-V-x(0,2)-S-x-[AGIV]-V Occurences: 7(7) PBUX_BACSU : 243- 249: vaivs LVe-StGV yfalg PYRP_BACCL : 252- 258: highq LVl-SkVV grdli PYRP_BACSU : 40- 47: ilvpk LVgmSpAV alvts UAPA_EMENI : 136- 143: dlqqy LVstSlIV cglls URAA_ECOLI : 103- 108: gvlfc LV--SfIV kkagt URAA_HAEIN : 340- 347: ggimm LVfgSiAV vgmst YICE_ECOLI : 160- 165: riitp LV--SgVV vmiig M 13: 17.5632 8( 7) S-x(2,4)-I-[AEGST]-x(2)-A-x(2)-A Occurences: 8(7) PBUX_BACSU : 420- 432: vynvf SkakkIEqeAdlA eqkta PYRP_BACCL : 390- 402: avlki SdsfqITgmAlsA ivgvl PYRP_BACCL : 392- 402: lkisd Sfq--ITgmAlsA ivgvl PYRP_BACSU : 312- 323: itrvf Svfv-IGgaAviA lcfgf UAPA_EMENI : 483- 493: tflfa Svv--ISgqAivA kapft URAA_ECOLI : 302- 313: itrvy Stwv-IGgaAifA illsc URAA_HAEIN : 388- 399: dvgnv Slkg-ISlcAivA iilnl YICE_ECOLI : 224- 234: ylrva Slv--IAmaAgyA lawfm N 14: 15.6802 7( 7) S-x(2,3)-I-x(3,4)-A-x(2)-A Occurences: 7(7) PBUX_BACSU : 10- 21: fgktl Slg-IqhvlAmyA gaivv PYRP_BACCL : 392- 402: lkisd Sfq-Itgm-AlsA ivgvl PYRP_BACSU : 312- 323: itrvf SvfvIgga-AviA lcfgf UAPA_EMENI : 483- 493: tflfa Svv-Isgq-AivA kapft URAA_ECOLI : 302- 313: itrvy StwvIgga-AifA illsc URAA_HAEIN : 388- 399: dvgnv SlkgIslc-AivA iilnl YICE_ECOLI : 224- 234: ylrva Slv-Iama-AgyA lawfm O 15: 15.6802 9( 7) V-x(0,1)-G-x(2,3)-L-x(2)-I Occurences: 9(7) PBUX_BACSU : 295- 303: afsqn V-GlvqLtgI kknav PYRP_BACCL : 404- 411: alsai V-Gvl-LnlI lpgrp PYRP_BACSU : 401- 409: qggfq VsGma-LaaI vgvil PYRP_BACSU : 410- 417: alaai V-Gvi-LnlI lpqak UAPA_EMENI : 359- 368: tfpls VyGpmvLpiI avfii URAA_ECOLI : 398- 405: alati V-Gig-LslI fklis URAA_HAEIN : 322- 329: sfcgk V-Gaf-LstI ptivm URAA_HAEIN : 384- 392: nmfvd V-GnvsLkgI slcai YICE_ECOLI : 93- 100: kawgp V-Gsg-LlsI qgtsf P 16: 15.6802 7( 7) L-L-x(0,1)-G-x(2,3)-A Occurences: 7(7) PBUX_BACSU : 278- 285: eglav LLgGifnA fpyta PYRP_BACCL : 345- 351: ggvsi LLfGii-A ssglr PYRP_BACSU : 350- 356: ggvsf LLfGii-A ssglr UAPA_EMENI : 323- 330: svvig LLvGcivA aacgy URAA_ECOLI : 340- 347: ggvsl LLyGvigA sgirv URAA_HAEIN : 267- 273: glhrt LL-GdgiA taaas YICE_ECOLI : 200- 207: apknl LLaGvvlA liill Q 17: 15.6802 11( 7) L-x(2,3)-I-x(2)-G-x(2,3)-A Occurences: 11(7) PBUX_BACSU : 187- 197: ksvsi Lig-IliGtfiA yfmgk PYRP_BACCL : 185- 195: slipv Lvg-IvvGylyA lavgl PYRP_BACCL : 407- 418: aivgv LlnlIlpGrpqA aenlf PYRP_BACCL : 408- 418: ivgvl Lnl-IlpGrpqA aenlf PYRP_BACSU : 191- 201: slipv Lig-IigGylfA ltqgi UAPA_EMENI : 450- 459: gyccc Lil-IvaGif-A kfaaa URAA_ECOLI : 56- 67: gigtl LylfIckGkipA ylgss URAA_HAEIN : 182- 191: kglmk Lip-ImfGit-A gyilc YICE_ECOLI : 178- 187: liqvg Lts-IggGya-A msdnt YICE_ECOLI : 357- 367: gfvva Lml-IvlGlfpA vsgfv YICE_ECOLI : 440- 451: wlknl LssgIaaGgitA ivlnl R 18: 15.6802 10( 7) L-x(1,2)-I-x(2)-G-x(2,3)-A Occurences: 10(7) PBUX_BACSU : 187- 197: ksvsi LigIliGtfiA yfmgk PYRP_BACCL : 185- 195: slipv LvgIvvGylyA lavgl PYRP_BACCL : 408- 418: ivgvl LnlIlpGrpqA aenlf PYRP_BACSU : 60- 69: gtlay Ll-ItkGqipA ylgss PYRP_BACSU : 191- 201: slipv LigIigGylfA ltqgi UAPA_EMENI : 450- 459: gyccc LilIvaGif-A kfaaa URAA_ECOLI : 58- 67: gtlly Lf-IckGkipA ylgss URAA_HAEIN : 182- 191: kglmk LipImfGit-A gyilc YICE_ECOLI : 178- 187: liqvg LtsIggGya-A msdnt YICE_ECOLI : 357- 367: gfvva LmlIvlGlfpA vsgfv S 19: 15.6802 9( 7) V-I-x(3,4)-G-x(3,4)-A Occurences: 9(7) PBUX_BACSU : 308- 318: ikkna VIvvt-GvilmA fglfp PYRP_BACCL : 129- 138: vvvgp VIivi-Glgl-A gtavg PYRP_BACCL : 376- 385: lvias VIlvi-Gigg-A vlkis PYRP_BACSU : 131- 140: vvvgp VIivi-Glgl-A stavn PYRP_BACSU : 381- 390: liits VIlvi-Gvgg-A fiqvs UAPA_EMENI : 320- 330: kscsv VIgllvGciv-A aacgy UAPA_EMENI : 320- 331: kscsv VIgllvGcivaA acgyf URAA_ECOLI : 371- 380: lilts VIlii-Gvsg-A kvnig URAA_HAEIN : 130- 139: vvvgp VIiii-Gmgl-A piavd YICE_ECOLI : 226- 236: rvasl VIamaaGyal-A wfmgm T 20: 15.6802 16( 7) P-x(1,2)-V-x-G-x(1,2)-V Occurences: 16(7) PBUX_BACSU : 122- 129: lvsff PpvVtGs-V vtiig PBUX_BACSU : 122- 130: lvsff PpvVtGsvV tiigi PBUX_BACSU : 123- 129: vsffp Pv-VtGs-V vtiig PBUX_BACSU : 123- 130: vsffp Pv-VtGsvV tiigi PYRP_BACCL : 122- 129: vmkll PpvVvGp-V iivig PYRP_BACCL : 123- 129: mkllp Pv-VvGp-V iivig PYRP_BACCL : 335- 342: lissi PtpVmGg-V sillf PYRP_BACSU : 124- 131: lmkil PpvVvGp-V iivig PYRP_BACSU : 125- 131: mkilp Pv-VvGp-V iivig PYRP_BACSU : 340- 347: lissv PsaVmGg-V sfllf UAPA_EMENI : 240- 248: iqkif PpiVtGptV mligi UAPA_EMENI : 241- 248: qkifp Pi-VtGptV mligi UAPA_EMENI : 356- 364: wvktf PlsVyGpmV lpiia URAA_ECOLI : 330- 337: aiqmi PlpVmGg-V sllly URAA_HAEIN : 123- 130: lqrff PpvVvGp-V iiiig URAA_HAEIN : 124- 130: qrffp Pv-VvGp-V iiiig YICE_ECOLI : 159- 165: rriit Pl-VsGv-V vmiig YICE_ECOLI : 159- 166: rriit Pl-VsGvvV miigl YICE_ECOLI : 366- 372: vlglf Pa-VsGf-V qhipe Number of patterns evaluated by Pratt:17963 Total running time: 10 seconds