------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file WHEP_TRS PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename WHEP_TRS.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SYEP_DROME 1714 SYEP_HUMAN 1440 SYG_BOMMO 687 SYG_HUMAN 685 SYH_HUMAN 509 SYH_MESAU 508 SYW_BOVIN 475 SYW_HUMAN 471 SYW_MOUSE 481 SYW_RABIT 475 Pratt run started at Thu Feb 6 21:34:07 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 14( 10) V-x(2)-L-K-x(3)-A 2: 16.1802 16( 10) L-K-x(2,3)-K-A 3: 16.1802 14( 10) K-x(4)-L-K-x(2,3)-K 4: 15.6802 12( 10) D-x(2,3)-K-x(4,5)-K-x(2)-K 5: 15.6802 13( 10) D-x(1,2)-K-x(4,5)-K-x(2)-K 6: 15.6802 16( 10) V-x(1,2)-L-K-x(3,4)-A 7: 15.6802 18( 10) V-x(0,1)-K-x(0,1)-L-x(3)-K 8: 15.6802 12( 10) A-x-K-x-L-x(3,5)-K 9: 15.6802 18( 10) A-x(1,2)-K-x(1,2)-L-x(3)-K 10: 15.6802 14( 10) A-x(0,1)-K-x-L-x(2,3)-K 11: 15.6802 13( 10) A-x(0,1)-K-x(0,1)-L-x(3)-K 12: 15.6802 14( 10) A-x(3)-L-x(3)-K-x(3,5)-K 13: 15.6802 16( 10) Q-x(3,4)-V-x(2)-L-x(0,1)-K 14: 15.6802 18( 10) L-x(4)-A-x(0,1)-Q-x(0,1)-G 15: 15.1802 13( 10) A-x(0,2)-K-x(2)-K-x(0,1)-K 16: 15.1802 10( 10) L-x-P-x(1,2)-A-x(0,2)-I 17: 15.1802 13( 10) Q-x(5)-K-x(0,1)-L-x(1,3)-K 18: 15.1802 10( 10) E-x-K-x(0,2)-K-x(2,3)-L 19: 15.1802 10( 10) T-x(0,1)-V-x(1,3)-S-x(2)-K 20: 15.1802 10( 10) S-x(1,3)-K-x(4)-E-x(1,2)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 45.4410 11( 10) V-[EKR]-x-L-K-[AEQST]-x(2)-A-[APS]-x(3)-[IV]-[DEK]-x-[AE]-V-x(2)-L-x(3)-K B 2: 40.3908 12( 10) V-x(1,2)-L-K-x(3)-A-[APS]-x(3)-[IV]-[DEK]-x-[AE]-V-x(2)-L-x(3)-K C 3: 22.4050 10( 10) Q-x(3)-[ADV]-x-K-x(0,1)-L-x(1,3)-K-[ADQ]-x(3)-[DEGQS] D 4: 21.3802 12( 10) A-[MV]-x(2)-L-x-[ANST]-x-K-x(3,5)-K E 5: 21.0805 10( 10) D-x(1,2)-K-x(4,5)-K-[ADNSTV]-x-K-x(3)-[DEPST]-x(4)-[ADQST] F 6: 18.9628 15( 10) Q-x(3,4)-V-x(2)-L-x(0,1)-K-x(3)-[AQ] G 7: 18.8977 13( 10) A-x(0,1)-K-x(0,1)-L-x(2)-[LP]-K H 8: 18.8308 14( 10) K-x(4)-L-K-x(2,3)-K-x(3)-[DEG] I 9: 18.7992 15( 10) L-K-x(2,3)-K-A-[APS] J 10: 18.3079 12( 10) V-x(0,1)-K-x(0,1)-L-x(3)-K-x-[PQS] K 11: 18.2978 17( 10) A-x(1,2)-K-x(1,2)-L-[LPV]-x(2)-K L 12: 17.9017 10( 10) D-x(2,3)-K-x(4,5)-K-[ANTV]-x-K M 13: 15.6802 12( 10) A-x-K-x-L-x(3,5)-K N 14: 15.6802 14( 10) A-x(0,1)-K-x-L-x(2,3)-K O 15: 15.6802 18( 10) L-x(4)-A-x(0,1)-Q-x(0,1)-G P 16: 15.1802 13( 10) A-x(0,2)-K-x(2)-K-x(0,1)-K Q 17: 15.1802 10( 10) L-x-P-x(1,2)-A-x(0,2)-I R 18: 15.1802 13( 10) Q-x(5)-K-x(0,1)-L-x(1,3)-K S 19: 15.1802 10( 10) E-x-K-x(0,2)-K-x(2,3)-L T 20: 15.1802 10( 10) T-x(0,1)-V-x(1,3)-S-x(2)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 45.4410 11( 10) V-[EKR]-x-L-K-[AEQST]-x(2)-A-[APS]-x(3)-[IV]-[DEK]-x-[AE]-V-x(2)-L-x(3)-K Occurences: 11(10) SYEP_DROME : 759- 783: qqgdl VRdLKSkkAAkdqIDvAVkkLlalK adyks SYEP_HUMAN : 692- 716: vqgdv VReLKAkkAPkedVDaAVkqLlslK aeyke SYEP_HUMAN : 843- 867: sqgev VRkLKTekAPkdqVDiAVqeLlqlK aqyks SYG_BOMMO : 24- 48: eqgdl VRkLKEekAPeidIKkAVaeLktrK kiled SYG_HUMAN : 24- 48: qqgdl VRkLKEdkAPqvdVDkAVaeLkarK rvlea SYH_HUMAN : 18- 42: lqger VRgLKQqkASaelIEeEVakLlklK aqlgp SYH_MESAU : 18- 42: srhrl VRgLKQqkASadqIEeEVakLlklK aqlgh SYW_BOVIN : 28- 52: aqgel VRdLKArnAAkdeIDsAVkmLlslK tsyka SYW_HUMAN : 23- 47: tqgel VRsLKAgnASkdeIDsAVkmLvslK msyka SYW_MOUSE : 27- 51: tqgel VRsLKAgnAPkdeIDsAVkmLlslK msyka SYW_RABIT : 27- 51: aqgel VKsLKArkAPkeeIDsAVkmLlslK tsyke B 2: 40.3908 12( 10) V-x(1,2)-L-K-x(3)-A-[APS]-x(3)-[IV]-[DEK]-x-[AE]-V-x(2)-L-x(3)-K Occurences: 12(10) SYEP_DROME : 759- 783: qqgdl VrdLKskkAAkdqIDvAVkkLlalK adyks SYEP_DROME : 831- 855: kqgdl VrdLKgkkASkpeIDaAVktLlelK aqykt SYEP_HUMAN : 692- 716: vqgdv VreLKakkAPkedVDaAVkqLlslK aeyke SYEP_HUMAN : 843- 867: sqgev VrkLKtekAPkdqVDiAVqeLlqlK aqyks SYG_BOMMO : 24- 48: eqgdl VrkLKeekAPeidIKkAVaeLktrK kiled SYG_HUMAN : 24- 48: qqgdl VrkLKedkAPqvdVDkAVaeLkarK rvlea SYH_HUMAN : 18- 42: lqger VrgLKqqkASaelIEeEVakLlklK aqlgp SYH_MESAU : 18- 42: srhrl VrgLKqqkASadqIEeEVakLlklK aqlgh SYW_BOVIN : 28- 52: aqgel VrdLKarnAAkdeIDsAVkmLlslK tsyka SYW_HUMAN : 23- 47: tqgel VrsLKagnASkdeIDsAVkmLvslK msyka SYW_MOUSE : 27- 51: tqgel VrsLKagnAPkdeIDsAVkmLlslK msyka SYW_RABIT : 27- 51: aqgel VksLKarkAPkeeIDsAVkmLlslK tsyke C 3: 22.4050 10( 10) Q-x(3)-[ADV]-x-K-x(0,1)-L-x(1,3)-K-[ADQ]-x(3)-[DEGQS] Occurences: 10(10) SYEP_DROME : 771- 788: kaakd QidvAvKkLlalKAdykS atgkd SYEP_HUMAN : 839- 855: dkvas QgevVrK-LkteKApkdQ vdiav SYG_BOMMO : 20- 36: anvke QgdlVrK-LkeeKApeiD ikkav SYG_HUMAN : 20- 36: lavrq QgdlVrK-LkedKApqvD vdkav SYH_HUMAN : 282- 298: vslve QllqDpK-LsqnKQaleG lgdlk SYH_MESAU : 282- 298: vclve QllqDpK-LsqnKQaveG lgdlk SYW_BOVIN : 199- 214: vplvi QmtdDeKyLw--KDltlD qaygy SYW_HUMAN : 194- 209: vplvi QmtdDeKyLw--KDltlD qaysy SYW_MOUSE : 198- 213: vplvi QmsdDeKyLw--KDltlE qaysy SYW_RABIT : 198- 213: vplvv QmsdDeKyLw--KDltlE qvygy D 4: 21.3802 12( 10) A-[MV]-x(2)-L-x-[ANST]-x-K-x(3,5)-K Occurences: 12(10) SYEP_DROME : 775- 787: dqidv AVkkLlAlKady--K satgk SYEP_DROME : 921- 933: atvda AVktLlSlKady--K aatgs SYEP_HUMAN : 708- 720: edvda AVkqLlSlKaey--K ektgq SYEP_HUMAN : 708- 722: edvda AVkqLlSlKaeykeK tgqey SYEP_HUMAN : 781- 793: akine AVecLlSlKaqy--K ektgk SYEP_HUMAN : 781- 795: akine AVecLlSlKaqykeK tgkey SYG_BOMMO : 40- 54: idikk AVaeLkTrKkiledK elsla SYG_HUMAN : 40- 54: vdvdk AVaeLkArKrvleaK elalq SYH_HUMAN : 140- 154: faryl AMnkLtNiKryhiaK vyrrd SYH_MESAU : 140- 154: fgryl AMnnLtNiKryhiaK vyrrd SYW_BOVIN : 44- 56: deids AVkmLlSlKtsy--K aatge SYW_HUMAN : 39- 51: deids AVkmLvSlKmsy--K aaage SYW_MOUSE : 43- 55: deids AVkmLlSlKmsy--K aamge SYW_RABIT : 43- 55: eeids AVkmLlSlKtsy--K eamge E 5: 21.0805 10( 10) D-x(1,2)-K-x(4,5)-K-[ADNSTV]-x-K-x(3)-[DEPST]-x(4)-[ADQST] Occurences: 10(10) SYEP_DROME : 785- 804: lalka Dy-Ksatg-KDwKpgqTsatsA pvpaa SYEP_HUMAN : 890- 911: gaedk DkkKkekenKSeKqnkPqkqnD gqrkd SYG_BOMMO : 36- 57: kapei DikKavaelKTrKkilEdkelS lapae SYG_HUMAN : 36- 57: kapqv DvdKavaelKArKrvlEakelA lqpkd SYH_HUMAN : 48- 69: aqlgp DesKqkfvlKTpKgtrDysprQ mavre SYH_MESAU : 48- 69: aqlgh DesKqkfvlKTpKgtrDysprQ mavre SYW_BOVIN : 367- 387: siflt DtaKqikt-KVnKhafSggrdT veehr SYW_HUMAN : 363- 383: siflt DtaKqikt-KVnKhafSggrdT ieehr SYW_MOUSE : 367- 387: siflt DtaKqiks-KVnKhafSggrdT veehr SYW_RABIT : 367- 387: siflt DtaKqikt-KVnKhafSggrdT ieehr F 6: 18.9628 15( 10) Q-x(3,4)-V-x(2)-L-x(0,1)-K-x(3)-[AQ] Occurences: 15(10) SYEP_DROME : 754- 767: dsqit QqgdlVrdL-KskkA akdqi SYEP_DROME : 755- 767: sqitq Qgdl-VrdL-KskkA akdqi SYEP_DROME : 827- 839: asivk Qgdl-VrdL-KgkkA skpei SYEP_DROME : 901- 913: sqita Qgdk-VreL-KsakA dkatv SYEP_HUMAN : 688- 700: nrvav Qgdv-VreL-KakkA pkedv SYEP_HUMAN : 839- 851: dkvas Qgev-VrkL-KtekA pkdqv SYG_BOMMO : 20- 32: anvke Qgdl-VrkL-KeekA peidi SYG_HUMAN : 19- 32: rlavr QqgdlVrkL-KedkA pqvdv SYG_HUMAN : 20- 32: lavrq Qgdl-VrkL-KedkA pqvdv SYH_HUMAN : 14- 26: elvkl Qger-VrgL-KqqkA saeli SYH_MESAU : 30- 44: kasad QieeeVakLlKlkaQ lghde SYW_BOVIN : 24- 36: hsiaa Qgel-VrdL-KarnA akdei SYW_HUMAN : 19- 31: nsiat Qgel-VrsL-KagnA skdei SYW_MOUSE : 23- 35: nsiat Qgel-VrsL-KagnA pkdei SYW_RABIT : 23- 35: ssiaa Qgel-VksL-KarkA pkeei G 7: 18.8977 13( 10) A-x(0,1)-K-x(0,1)-L-x(2)-[LP]-K Occurences: 13(10) SYEP_DROME : 775- 783: dqidv AvKkLlaLK adyks SYEP_DROME : 847- 855: peida AvKtLleLK aqykt SYEP_DROME : 921- 929: atvda AvKtLlsLK adyka SYEP_DROME : 1151- 1157: idaev A-K-LlaLK akyke SYEP_HUMAN : 708- 716: edvda AvKqLlsLK aeyke SYG_BOMMO : 433- 441: girla AeKkLpaPK qievv SYG_HUMAN : 428- 436: kvplv AeKpLkePK tvnvv SYH_HUMAN : 36- 42: ieeev A-K-LlkLK aqlgp SYH_MESAU : 36- 42: ieeev A-K-LlkLK aqlgh SYW_BOVIN : 44- 52: deids AvKmLlsLK tsyka SYW_HUMAN : 39- 47: deids AvKmLvsLK msyka SYW_MOUSE : 43- 51: deids AvKmLlsLK msyka SYW_RABIT : 43- 51: eeids AvKmLlsLK tsyke H 8: 18.8308 14( 10) K-x(4)-L-K-x(2,3)-K-x(3)-[DEG] Occurences: 14(10) SYEP_DROME : 777- 791: idvav KkllaLKadyKsatG kdwkp SYEP_DROME : 849- 863: idaav KtlleLKaqyKtltG qdwkp SYEP_DROME : 923- 937: vdaav KtllsLKadyKaatG sdwkp SYEP_DROME : 1002- 1016: veaev KlllaLKtdyKsltG qewkp SYEP_DROME : 1077- 1091: idpev KtllaLKgeyKtlsG kdwtp SYEP_HUMAN : 710- 724: vdaav KqllsLKaeyKektG qeykp SYG_BOMMO : 39- 52: eidik KavaeLKtr-KkilE dkels SYG_BOMMO : 39- 53: eidik KavaeLKtrkKileD kelsl SYG_HUMAN : 39- 52: qvdvd KavaeLKar-KrvlE akela SYH_HUMAN : 51- 64: gpdes KqkfvLKtp-KgtrD ysprq SYH_MESAU : 51- 64: ghdes KqkfvLKtp-KgtrD ysprq SYW_BOVIN : 46- 60: idsav KmllsLKtsyKaatG edykv SYW_HUMAN : 41- 55: idsav KmlvsLKmsyKaaaG edyka SYW_MOUSE : 45- 59: idsav KmllsLKmsyKaamG eeyka SYW_RABIT : 45- 59: idsav KmllsLKtsyKeamG edyka I 9: 18.7992 15( 10) L-K-x(2,3)-K-A-[APS] Occurences: 15(10) SYEP_DROME : 762- 768: dlvrd LKsk-KAA kdqid SYEP_DROME : 834- 840: dlvrd LKgk-KAS kpeid SYEP_DROME : 928- 935: ktlls LKadyKAA tgsdw SYEP_DROME : 1062- 1068: dkirk LKse-KAA knvid SYEP_HUMAN : 66- 72: awqeq LKqk-KAP vhvkr SYEP_HUMAN : 695- 701: dvvre LKak-KAP kedvd SYEP_HUMAN : 846- 852: evvrk LKte-KAP kdqvd SYG_BOMMO : 27- 33: dlvrk LKee-KAP eidik SYG_HUMAN : 27- 33: dlvrk LKed-KAP qvdvd SYH_HUMAN : 21- 27: ervrg LKqq-KAS aelie SYH_MESAU : 21- 27: rlvrg LKqq-KAS adqie SYW_BOVIN : 51- 58: kmlls LKtsyKAA tgedy SYW_HUMAN : 46- 53: kmlvs LKmsyKAA agedy SYW_MOUSE : 50- 57: kmlls LKmsyKAA mgeey SYW_RABIT : 30- 36: elvks LKar-KAP keeid J 10: 18.3079 12( 10) V-x(0,1)-K-x(0,1)-L-x(3)-K-x-[PQS] Occurences: 12(10) SYEP_DROME : 848- 857: eidaa V-KtLlelKaQ yktlt SYEP_HUMAN : 765- 774: aqgev VrK-LkaeKsP kakin SYEP_HUMAN : 843- 852: sqgev VrK-LkteKaP kdqvd SYG_BOMMO : 24- 33: eqgdl VrK-LkeeKaP eidik SYG_HUMAN : 24- 33: qqgdl VrK-LkedKaP qvdvd SYH_HUMAN : 35- 44: lieee VaK-LlklKaQ lgpde SYH_MESAU : 35- 44: qieee VaK-LlklKaQ lghde SYW_BOVIN : 45- 54: eidsa V-KmLlslKtS ykaat SYW_HUMAN : 40- 49: eidsa V-KmLvslKmS ykaaa SYW_MOUSE : 44- 53: eidsa V-KmLlslKmS ykaam SYW_RABIT : 27- 36: aqgel V-KsLkarKaP keeid SYW_RABIT : 44- 53: eidsa V-KmLlslKtS ykeam K 11: 18.2978 17( 10) A-x(1,2)-K-x(1,2)-L-[LPV]-x(2)-K Occurences: 17(10) SYEP_DROME : 775- 783: dqidv Av-Kk-LLalK adyks SYEP_DROME : 846- 855: kpeid AavKt-LLelK aqykt SYEP_DROME : 847- 855: peida Av-Kt-LLelK aqykt SYEP_DROME : 920- 929: katvd AavKt-LLslK adyka SYEP_DROME : 921- 929: atvda Av-Kt-LLslK adyka SYEP_DROME : 999- 1008: kslve AevKl-LLalK tdyks SYEP_HUMAN : 707- 716: kedvd AavKq-LLslK aeyke SYEP_HUMAN : 708- 716: edvda Av-Kq-LLslK aeyke SYG_BOMMO : 432- 441: tgirl AaeKk-LPapK qievv SYG_BOMMO : 433- 441: girla Ae-Kk-LPapK qievv SYG_HUMAN : 421- 430: schar At-KvpLVaeK plkep SYH_HUMAN : 434- 444: selwd AgiKaeLLykK npkll SYH_MESAU : 433- 443: lqlwd AgiKaeLLykK npkll SYW_BOVIN : 44- 52: deids Av-Km-LLslK tsyka SYW_HUMAN : 39- 47: deids Av-Km-LVslK msyka SYW_MOUSE : 43- 51: deids Av-Km-LLslK msyka SYW_RABIT : 43- 51: eeids Av-Km-LLslK tsyke L 12: 17.9017 10( 10) D-x(2,3)-K-x(4,5)-K-[ANTV]-x-K Occurences: 10(10) SYEP_DROME : 1057- 1069: iqaqg DkirKlkse-KAaK nvidp SYEP_HUMAN : 566- 578: pvlgk DedfKqyvn-KNsK heelm SYG_BOMMO : 36- 48: kapei Dik-KavaelKTrK kiled SYG_HUMAN : 36- 48: kapqv Dvd-KavaelKArK rvlea SYH_HUMAN : 48- 60: aqlgp Des-KqkfvlKTpK gtrdy SYH_MESAU : 48- 60: aqlgh Des-KqkfvlKTpK gtrdy SYW_BOVIN : 367- 378: siflt Dta-Kqikt-KVnK hafsg SYW_HUMAN : 363- 374: siflt Dta-Kqikt-KVnK hafsg SYW_MOUSE : 367- 378: siflt Dta-Kqiks-KVnK hafsg SYW_RABIT : 367- 378: siflt Dta-Kqikt-KVnK hafsg M 13: 15.6802 12( 10) A-x-K-x-L-x(3,5)-K Occurences: 12(10) SYEP_DROME : 775- 783: dqidv AvKkLlal--K adyks SYEP_DROME : 847- 855: peida AvKtLlel--K aqykt SYEP_DROME : 921- 929: atvda AvKtLlsl--K adyka SYEP_HUMAN : 708- 716: edvda AvKqLlsl--K aeyke SYG_BOMMO : 433- 441: girla AeKkLpap--K qievv SYG_HUMAN : 428- 436: kvplv AeKpLkep--K tvnvv SYH_HUMAN : 416- 426: vlvas AqKkLleerlK lvsel SYH_MESAU : 415- 425: vlvas AqKkLaggetK aclql SYW_BOVIN : 44- 52: deids AvKmLlsl--K tsyka SYW_HUMAN : 39- 47: deids AvKmLvsl--K msyka SYW_MOUSE : 43- 51: deids AvKmLlsl--K msyka SYW_RABIT : 43- 51: eeids AvKmLlsl--K tsyke N 14: 15.6802 14( 10) A-x(0,1)-K-x-L-x(2,3)-K Occurences: 14(10) SYEP_DROME : 775- 783: dqidv AvKkLlalK adyks SYEP_DROME : 847- 855: peida AvKtLlelK aqykt SYEP_DROME : 921- 929: atvda AvKtLlslK adyka SYEP_DROME : 1151- 1157: idaev A-KlLal-K akyke SYEP_HUMAN : 708- 716: edvda AvKqLlslK aeyke SYEP_HUMAN : 829- 835: letpe A-KvLfd-K vasqg SYG_BOMMO : 433- 441: girla AeKkLpapK qievv SYG_HUMAN : 428- 436: kvplv AeKpLkepK tvnvv SYH_HUMAN : 36- 42: ieeev A-KlLkl-K aqlgp SYH_MESAU : 36- 42: ieeev A-KlLkl-K aqlgh SYW_BOVIN : 44- 52: deids AvKmLlslK tsyka SYW_HUMAN : 39- 47: deids AvKmLvslK msyka SYW_MOUSE : 43- 51: deids AvKmLlslK msyka SYW_RABIT : 43- 51: eeids AvKmLlslK tsyke O 15: 15.6802 18( 10) L-x(4)-A-x(0,1)-Q-x(0,1)-G Occurences: 18(10) SYEP_DROME : 895- 902: svaqi LsqitA-Q-G dkvre SYEP_DROME : 973- 981: ltvnt LlnkiAqQ-G dkirq SYEP_DROME : 973- 981: ltvnt LlnkiA-QqG dkirq SYEP_DROME : 1049- 1056: dvgsv LskiqA-Q-G dkirk SYEP_HUMAN : 399- 407: mtveg LkqfiAaQ-G ssrsv SYEP_HUMAN : 681- 689: edslv LynrvAvQ-G dvvre SYEP_HUMAN : 754- 762: lesks LydevAaQ-G evvrk SYEP_HUMAN : 832- 840: peakv LfdkvAsQ-G evvrk SYG_BOMMO : 248- 255: lvkgf LrpetA-Q-G ifvnf SYG_BOMMO : 271- 279: fnqgr LpfaaA-QiG nsfrn SYG_HUMAN : 242- 249: nmpgy LrpetA-Q-G iflnf SYG_HUMAN : 265- 273: fnqgk LpfaaA-QiG nsfrn SYH_HUMAN : 38- 46: eevak LlklkA-QlG pdesk SYH_HUMAN : 340- 348: iyeav LlqtpA-QaG eeplg SYH_MESAU : 38- 46: eevak LlklkA-QlG hdesk SYW_BOVIN : 17- 25: gsple LfhsiAaQ-G elvrd SYW_HUMAN : 12- 20: aslle LfnsiAtQ-G elvrs SYW_MOUSE : 16- 24: tsple LfnsiAtQ-G elvrs SYW_RABIT : 16- 24: aspqe LfssiAaQ-G elvks P 16: 15.1802 13( 10) A-x(0,2)-K-x(2)-K-x(0,1)-K Occurences: 13(10) SYEP_DROME : 729- 734: vnapd A--KatK-K asspv SYEP_DROME : 1194- 1199: aqpkp A--KpvK-K epada SYEP_HUMAN : 770- 777: vrklk Ae-KspKaK ineav SYEP_HUMAN : 886- 893: vsatg AedKdkK-K keken SYEP_HUMAN : 886- 894: vsatg AedKdkKkK ekenk SYG_BOMMO : 42- 49: ikkav AelKtrK-K iledk SYG_BOMMO : 454- 461: ipnng AigKafK-K dsqai SYG_HUMAN : 449- 456: epskg AigKayK-K daklv SYH_HUMAN : 36- 42: ieeev A--KllKlK aqlgp SYH_MESAU : 36- 42: ieeev A--KllKlK aqlgh SYW_BOVIN : 369- 375: fltdt A--KqiKtK vnkha SYW_HUMAN : 365- 371: fltdt A--KqiKtK vnkha SYW_MOUSE : 369- 375: fltdt A--KqiKsK vnkha SYW_RABIT : 369- 375: fltdt A--KqiKtK vnkha Q 17: 15.1802 10( 10) L-x-P-x(1,2)-A-x(0,2)-I Occurences: 10(10) SYEP_DROME : 1495- 1502: nqglv LpPhvAc-I qaivv SYEP_HUMAN : 977- 984: sgcyi LrPw-AyaI weaik SYG_BOMMO : 248- 256: lvkgf LrPetAqgI fvnfk SYG_HUMAN : 242- 250: nmpgy LrPetAqgI flnfk SYH_HUMAN : 259- 267: vgekg LaPevAdrI gdyvq SYH_MESAU : 259- 267: vgekg LaPevAdrI gdyvq SYW_BOVIN : 310- 315: tdvqc LiPc-A--I dqdpy SYW_HUMAN : 306- 311: tdiqc LiPc-A--I dqdpy SYW_MOUSE : 310- 315: tdiqc LiPc-A--I dqdpy SYW_RABIT : 310- 315: adiqc LiPc-A--I dqdpy R 18: 15.1802 13( 10) Q-x(5)-K-x(0,1)-L-x(1,3)-K Occurences: 13(10) SYEP_DROME : 771- 783: kaakd QidvavKkLlalK adyks SYEP_DROME : 1055- 1066: skiqa QgdkirK-LkseK aaknv SYEP_DROME : 1522- 1532: ddera QlldacKaLe--K rlvgg SYEP_HUMAN : 761- 772: devaa QgevvrK-LkaeK spkak SYEP_HUMAN : 839- 850: dkvas QgevvrK-LkteK apkdq SYG_BOMMO : 20- 31: anvke QgdlvrK-LkeeK apeid SYG_HUMAN : 20- 31: lavrq QgdlvrK-LkedK apqvd SYH_HUMAN : 282- 293: vslve QllqdpK-LsqnK qaleg SYH_MESAU : 282- 293: vclve QllqdpK-LsqnK qaveg SYW_BOVIN : 199- 209: vplvi QmtddeKyLw--K dltld SYW_HUMAN : 194- 204: vplvi QmtddeKyLw--K dltld SYW_MOUSE : 198- 208: vplvi QmsddeKyLw--K dltle SYW_RABIT : 198- 208: vplvv QmsddeKyLw--K dltle S 19: 15.1802 10( 10) E-x-K-x(0,2)-K-x(2,3)-L Occurences: 10(10) SYEP_DROME : 603- 611: aalnl EnKdfKkt-L kltwl SYEP_HUMAN : 945- 952: trlgl EaK--KeenL adwys SYG_BOMMO : 43- 51: kkava ElKtrKki-L edkel SYG_HUMAN : 43- 51: dkava ElKarKrv-L eakel SYH_HUMAN : 49- 56: qlgpd EsKq-Kfv-L ktpkg SYH_MESAU : 49- 56: qlghd EsKq-Kfv-L ktpkg SYW_BOVIN : 156- 163: ilday EnK--KpfyL ytgrg SYW_HUMAN : 151- 158: vlday EnK--KpfyL ytgrg SYW_MOUSE : 155- 162: ilday EnK--KpfyL ytgrg SYW_RABIT : 155- 162: vlday EnK--KpfyL ytgrg T 20: 15.1802 10( 10) T-x(0,1)-V-x(1,3)-S-x(2)-K Occurences: 10(10) SYEP_DROME : 437- 443: lnmtn T-Vl--SkrK ltwfv SYEP_HUMAN : 359- 365: lnlnn T-Vl--SkrK ltwfv SYG_BOMMO : 654- 663: madvp TvVrdlSnsK ilwsd SYG_HUMAN : 364- 372: iylyl TkVgi-SpdK lrfrq SYH_HUMAN : 409- 418: irtte TqVlvaSaqK kllee SYH_MESAU : 408- 417: vrtte TqVlvaSaqK klagg SYW_BOVIN : 94- 101: fvdpw T-Vqt-SsaK gidyd SYW_HUMAN : 89- 96: fvdpw T-Vqt-SsaK gidyd SYW_MOUSE : 93- 100: fvdpw T-Vrt-SsaK gidyd SYW_RABIT : 93- 100: fvdpw T-Vrt-SsaK gidyd Number of patterns evaluated by Pratt:18886 Total running time: 23 seconds