------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file VINCULIN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename VINCULIN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: VINC_CAEEL 1010 VINC_CHICK 1065 VINC_HUMAN 1065 VINC_PIG 336 VINC_XENLA 235 Pratt run started at Thu Feb 6 21:33:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 149.1218 5( 5) S-x(0,1)-E-x(0,1)-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G 2: 148.1218 5( 5) E-V-T-x-L-A-x(0,2)-V-x(0,2)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G 3: 148.1218 5( 5) S-x-E-V-T-x-L-A-x(0,2)-V-x(0,2)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L 4: 145.4518 5( 5) S-x(0,1)-E-E-x(3)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K 5: 145.4518 5( 5) V-T-x(0,1)-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G-x(2)-N 6: 144.4518 5( 5) E-x(0,2)-E-x(0,1)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K-x(2)-W 7: 144.4518 5( 5) E-x-S-E-x(3)-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R 8: 143.9518 5( 5) T-x-L-A-x(0,2)-V-x(0,2)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G-x(2)-N 9: 143.9518 5( 5) V-T-x-L-A-x(0,2)-V-x(0,2)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G 10: 141.2817 5( 5) E-x(0,1)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K-x(2)-W 11: 141.2817 5( 5) A-x(2)-S-x(0,1)-E-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T 12: 140.7817 5( 5) A-x(0,1)-S-x-E-x(0,1)-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T 13: 140.7817 5( 5) A-x(0,1)-S-x(1,2)-E-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T 14: 140.7817 5( 5) A-x(1,2)-S-x(1,2)-E-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T 15: 140.7817 5( 5) A-x(1,2)-S-x(0,1)-E-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T 16: 140.2817 5( 5) E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K-x(2)-W 17: 140.2817 5( 5) S-x(4)-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K 18: 140.2817 9( 5) E-x(0,1)-E-x(1,3)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-x(2)-V-R-x-A-E-A-A-S-I-K-I-R-T-x(2)-G-x(2)-L-R-W-x-R-K 19: 140.2817 5( 5) D-x(0,2)-E-x(0,1)-V-T-x-L-A-x(3)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M 20: 139.7817 5( 5) L-A-x(0,2)-V-x(0,2)-A-x(2)-C-T-D-x(3)-R-T-x-L-L-Q-V-x-E-R-I-P-T-I-x-T-Q-L-K-x-L-S-T-V-K-A-T-M-L-G-x(2)-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 181.4726 5( 5) S-x(0,1)-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G B 2: 180.9716 5( 5) V-T-x(0,1)-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N C 3: 179.9704 5( 5) S-x(0,1)-E-E-[DS]-[DE]-[EQ]-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K D 4: 179.0638 5( 5) E-[EG]-S-E-[EQ]-[AD]-[DT]-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R E 5: 179.0090 5( 5) S-E-[EQ]-[AD]-[DT]-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT] F 6: 177.2775 5( 5) S-[DE]-E-V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L G 7: 176.3540 5( 5) T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N H 8: 176.3301 5( 5) A-x(0,1)-S-[DS]-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T I 9: 174.1069 5( 5) E-V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G J 10: 173.6325 5( 5) A-x(2)-S-x(0,1)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T K 11: 173.1560 5( 5) V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS] L 12: 173.1325 5( 5) A-x(0,1)-S-x(1,2)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T M 13: 173.1325 5( 5) A-x(1,2)-S-x(1,2)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T N 14: 173.1325 5( 5) A-x(1,2)-S-x(0,1)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T O 15: 172.6325 5( 5) D-x(0,2)-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M P 16: 172.5939 5( 5) E-x(0,2)-E-x(0,1)-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W Q 17: 172.1607 5( 5) L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N-[IV] R 18: 168.4239 9( 5) E-x(0,1)-E-x(1,3)-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT] S 19: 168.4125 5( 5) E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W-x-[NQ] T 20: 166.2419 5( 5) E-x(0,1)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W Best patterns with alignements: fitness hits(seqs) Pattern A 1: 181.4726 5( 5) S-x(0,1)-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G Occurences: 5(5) VINC_CAEEL : 892- 941: aiads SeE-VTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLG sanvi VINC_CAEEL : 892- 941: aiads S-EeVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLG sanvi VINC_CHICK : 957- 1006: diaka SdE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_HUMAN : 957- 1006: diaka SdE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_PIG : 228- 277: diaka SdE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_XENLA : 127- 176: diaka SdE-VTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis B 2: 180.9716 5( 5) V-T-x(0,1)-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N Occurences: 5(5) VINC_CAEEL : 895- 944: dssee VTrLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLGSAN vigpy VINC_CHICK : 960- 1009: kasde VTrLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_HUMAN : 960- 1009: kasde VTrLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_PIG : 231- 280: kasde VTrLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_XENLA : 130- 179: kasde VTkLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee C 3: 179.9704 5( 5) S-x(0,1)-E-E-[DS]-[DE]-[EQ]-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K Occurences: 5(5) VINC_CAEEL : 956- 1004: qpveg S-EEDDEAmQqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRK pmwsn VINC_CHICK : 1011- 1060: grtni SdEESEQAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRK tpwyq VINC_HUMAN : 1011- 1060: grtni SdEESEQAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRK tpwyq VINC_PIG : 282- 331: grtni SdEESEQAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRK tpwyq VINC_XENLA : 181- 230: grtni SdEESEQAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARK tpwyq D 4: 179.0638 5( 5) E-[EG]-S-E-[EQ]-[AD]-[DT]-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R Occurences: 5(5) VINC_CAEEL : 954- 1003: ygqpv EGSEEDDEaMqqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLR kpmws VINC_CHICK : 1013- 1059: tnisd EESEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVR ktpwy VINC_HUMAN : 1013- 1059: tnisd EESEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVR ktpwy VINC_PIG : 284- 330: tnisd EESEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVR ktpwy VINC_XENLA : 183- 229: tnisd EESEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWAR ktpwy E 5: 179.0090 5( 5) S-E-[EQ]-[AD]-[DT]-E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT] Occurences: 5(5) VINC_CAEEL : 956- 1005: qpveg SEEDDEaMqqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRKP mwsnf VINC_CHICK : 1015- 1061: isdee SEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_HUMAN : 1015- 1061: isdee SEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_PIG : 286- 332: isdee SEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_XENLA : 185- 231: isdee SEQATE-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKT pwyq F 6: 177.2775 5( 5) S-[DE]-E-V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L Occurences: 5(5) VINC_CAEEL : 892- 940: aiads SEEVTRLA--VqlARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATML gsanv VINC_CHICK : 957- 1005: diaka SDEVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATML grtni VINC_HUMAN : 957- 1005: diaka SDEVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATML grtni VINC_PIG : 228- 276: diaka SDEVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATML grtni VINC_XENLA : 127- 175: diaka SDEVTKLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATML grtni G 7: 176.3540 5( 5) T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N Occurences: 5(5) VINC_CAEEL : 896- 944: sseev TRLA--VqlARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLGSAN vigpy VINC_CHICK : 961- 1009: asdev TRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_HUMAN : 961- 1009: asdev TRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_PIG : 232- 280: asdev TRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee VINC_XENLA : 131- 179: asdev TKLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTN isdee H 8: 176.3301 5( 5) A-x(0,1)-S-[DS]-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T Occurences: 5(5) VINC_CAEEL : 889- 938: cskai AdSSEeVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CHICK : 956- 1003: kdiak A-SDE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_HUMAN : 956- 1003: kdiak A-SDE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_PIG : 227- 274: kdiak A-SDE-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_XENLA : 126- 173: kdiak A-SDE-VTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt I 9: 174.1069 5( 5) E-V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G Occurences: 5(5) VINC_CAEEL : 894- 941: adsse EVTRLA--VqlARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLG sanvi VINC_CHICK : 959- 1006: akasd EVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_HUMAN : 959- 1006: akasd EVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_PIG : 230- 277: akasd EVTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis VINC_XENLA : 129- 176: akasd EVTKLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLG rtnis J 10: 173.6325 5( 5) A-x(2)-S-x(0,1)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T Occurences: 5(5) VINC_CAEEL : 889- 938: cskai AdsSeEVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CHICK : 954- 1003: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_HUMAN : 954- 1003: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_PIG : 225- 274: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_XENLA : 124- 173: cakdi AkaSdEVTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt K 11: 173.1560 5( 5) V-T-[KR]-L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS] Occurences: 5(5) VINC_CAEEL : 895- 942: dssee VTRLA--VqlARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLGS anvig VINC_CHICK : 960- 1007: kasde VTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGR tnisd VINC_HUMAN : 960- 1007: kasde VTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGR tnisd VINC_PIG : 231- 278: kasde VTRLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGR tnisd VINC_XENLA : 130- 177: kasde VTKLAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGR tnisd L 12: 173.1325 5( 5) A-x(0,1)-S-x(1,2)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T Occurences: 5(5) VINC_CAEEL : 889- 938: cskai AdSseEVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CHICK : 956- 1003: kdiak A-Sd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_HUMAN : 956- 1003: kdiak A-Sd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_PIG : 227- 274: kdiak A-Sd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_XENLA : 126- 173: kdiak A-Sd-EVTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt M 13: 173.1325 5( 5) A-x(1,2)-S-x(1,2)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T Occurences: 5(5) VINC_CAEEL : 889- 938: cskai AdsSe-EVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CAEEL : 889- 938: cskai Ad-SseEVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CHICK : 954- 1003: cakdi AkaSd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_HUMAN : 954- 1003: cakdi AkaSd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_PIG : 225- 274: cakdi AkaSd-EVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_XENLA : 124- 173: cakdi AkaSd-EVTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt N 14: 173.1325 5( 5) A-x(1,2)-S-x(0,1)-E-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T Occurences: 5(5) VINC_CAEEL : 889- 938: cskai AdsSeEVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKAT mlgsa VINC_CHICK : 954- 1003: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_HUMAN : 954- 1003: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_PIG : 225- 274: cakdi AkaSdEVTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt VINC_XENLA : 124- 173: cakdi AkaSdEVTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKAT mlgrt O 15: 172.6325 5( 5) D-x(0,2)-E-x(0,1)-V-T-[KR]-L-A-x-[EQ]-[LV]-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M Occurences: 5(5) VINC_CAEEL : 890- 939: skaia DssEeVTRLAvQLARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATM lgsan VINC_CHICK : 958- 1004: iakas D--E-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATM lgrtn VINC_HUMAN : 958- 1004: iakas D--E-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATM lgrtn VINC_PIG : 229- 275: iakas D--E-VTRLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATM lgrtn VINC_XENLA : 128- 174: iakas D--E-VTKLAkEVAKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATM lgrtn P 16: 172.5939 5( 5) E-x(0,2)-E-x(0,1)-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W Occurences: 5(5) VINC_CAEEL : 958- 1007: vegse EddE-AmQqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRKPmW snf VINC_CHICK : 1014- 1063: nisde Es-EqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_HUMAN : 1014- 1063: nisde Es-EqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_PIG : 285- 334: nisde Es-EqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_XENLA : 184- 233: nisde Es-EqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKTpW yq Q 17: 172.1607 5( 5) L-A-x(0,2)-V-x(0,2)-A-[KR]-x-C-T-D-x-[KR]-[IM]-R-T-[AN]-L-L-Q-V-[CS]-E-R-I-P-T-I-[AS]-T-Q-L-K-[IV]-L-S-T-V-K-A-T-M-L-G-[RS]-[AT]-N-[IV] Occurences: 5(5) VINC_CAEEL : 898- 945: eevtr LA--VqlARlCTDiKMRTALLQVSERIPTIATQLKVLSTVKATMLGSANV igpyg VINC_CHICK : 963- 1010: devtr LAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNI sdees VINC_HUMAN : 963- 1010: devtr LAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNI sdees VINC_PIG : 234- 281: devtr LAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNI sdees VINC_XENLA : 133- 180: devtk LAkeV--AKqCTDkRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNI sdees R 18: 168.4239 9( 5) E-x(0,1)-E-x(1,3)-A-x-[EQ]-x-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT] Occurences: 9(5) VINC_CAEEL : 957- 1005: pvegs E-EddeAmQqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRKP mwsnf VINC_CHICK : 1013- 1061: tnisd E-EseqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_CHICK : 1014- 1061: nisde EsEq--AtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_HUMAN : 1013- 1061: tnisd E-EseqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_HUMAN : 1014- 1061: nisde EsEq--AtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_PIG : 284- 332: tnisd E-EseqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_PIG : 285- 332: nisde EsEq--AtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKT pwyq VINC_XENLA : 183- 231: tnisd E-EseqAtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKT pwyq VINC_XENLA : 184- 231: nisde EsEq--AtEmLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKT pwyq S 19: 168.4125 5( 5) E-x(0,1)-M-x(0,2)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W-x-[NQ] Occurences: 5(5) VINC_CAEEL : 961- 1009: seedd EaMqqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRKPmWsN f VINC_CHICK : 1020- 1065: seqat E-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpWyQ VINC_HUMAN : 1020- 1065: seqat E-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpWyQ VINC_PIG : 291- 336: seqat E-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpWyQ VINC_XENLA : 190- 235: seqat E-M--LVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKTpWyQ T 20: 166.2419 5( 5) E-x(0,1)-A-x(3)-L-V-H-N-A-Q-N-L-M-Q-S-V-K-[DE]-[TV]-V-R-[AE]-A-E-A-A-S-I-K-I-R-T-[DN]-[AS]-G-[FL]-x-L-R-W-[ALV]-R-K-[PT]-x-W Occurences: 5(5) VINC_CAEEL : 961- 1007: seedd E-AmqqLVHNAQNLMQSVKDVVRAAEAASIKIRTNSGLrLRWLRKPmW snf VINC_CHICK : 1016- 1063: sdees EqAtemLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_HUMAN : 1016- 1063: sdees EqAtemLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_PIG : 287- 334: sdees EqAtemLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWVRKTpW yq VINC_XENLA : 186- 233: sdees EqAtemLVHNAQNLMQSVKETVREAEAASIKIRTDAGFtLRWARKTpW yq Number of patterns evaluated by Pratt:151373 Total running time: 51 seconds