------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file UROD_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename UROD_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DCUP_BACSU 353 DCUP_ECOLI 353 DCUP_HUMAN 367 DCUP_MYCLE 382 DCUP_RAT 364 DCUP_RHOCA 344 DCUP_RHOSH 27 DCUP_SYNP7 354 DCUP_YEAST 362 Pratt run started at Thu Feb 6 21:32:26 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 12( 9) P-x(1,2)-W-x-M-R-Q-A-G 2: 25.0203 9( 9) W-x-M-R-Q-A-G 3: 20.8503 9( 9) M-R-Q-A-G 4: 16.6802 9( 9) R-Q-A-G 5: 12.5102 13( 9) Q-A-G 6: 12.0102 11( 9) A-x(3,4)-L-P 7: 12.0102 15( 9) L-x-G-x(3,4)-P 8: 12.0102 10( 9) L-x(0,1)-G-x(3)-P 9: 12.0102 12( 9) L-x(0,1)-A-x(2)-G 10: 12.0102 12( 9) T-x(0,1)-L-x(5)-E 11: 11.5102 22( 9) G-x(1,2)-L-x(0,1)-P 12: 11.5102 22( 9) A-G-x(2,4)-L 13: 11.5102 22( 9) L-x(2,3)-A-x(0,1)-G 14: 11.5102 12( 9) L-x(4)-G-x(0,2)-P 15: 11.5102 12( 9) G-x(2,4)-L-P 16: 11.5102 13( 9) G-x(3,4)-P-x(0,1)-T 17: 11.5102 10( 9) A-x(2,4)-G-E 18: 11.5102 12( 9) L-x-A-x(2,4)-G 19: 11.5102 12( 9) M-x(0,1)-R-x(0,1)-A 20: 11.5102 11( 9) M-x(2)-A-x(0,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 28.6904 12( 9) P-x(1,2)-W-x-M-R-Q-A-G B 2: 27.1562 9( 9) G-x(3,4)-P-x(0,1)-T-[LP]-x(2)-[WY]-x(2)-[ER]-[GQ]-x-[GPS] C 3: 25.0203 9( 9) W-x-M-R-Q-A-G D 4: 21.7048 10( 9) A-x(2,4)-G-E-x(4)-[NPQT]-x(4)-[IMV]-[DHR]-x(2)-[GTV] E 5: 20.8503 9( 9) M-R-Q-A-G F 6: 18.9685 9( 9) L-x(0,1)-A-[AGLV]-x-G-[DEHR]-x(4)-[PTV] G 7: 17.2053 9( 9) L-x(0,1)-A-x(2)-G-[EHR]-x(4)-[PTV] H 8: 16.6802 9( 9) R-Q-A-G I 9: 16.4143 12( 9) T-x(0,1)-L-x-[ASTV]-x(3)-E-x(2)-[DGPS] J 10: 15.6802 11( 9) M-x(0,1)-R-x(0,1)-A-G K 11: 14.6045 9( 9) L-x(0,1)-G-[ENQ]-x(2)-P L 12: 14.2103 13( 9) L-x-G-x(3,4)-P-x-[APTV] M 13: 13.7131 15( 9) L-x(2,3)-A-x(0,1)-G-x(2)-[ALPV] N 14: 13.3994 15( 9) G-x(1,2)-L-x(0,1)-P-[DEGST] O 15: 12.5102 13( 9) Q-A-G P 16: 12.0102 11( 9) A-x(3,4)-L-P Q 17: 12.0102 10( 9) L-x(0,1)-G-x(3)-P R 18: 11.5102 22( 9) A-G-x(2,4)-L S 19: 11.5102 12( 9) L-x(4)-G-x(0,2)-P T 20: 11.5102 12( 9) G-x(2,4)-L-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 28.6904 12( 9) P-x(1,2)-W-x-M-R-Q-A-G Occurences: 12(9) DCUP_BACSU : 24- 32: kadht Pv-WyMRQAG rsqpe DCUP_ECOLI : 22- 30: pvdvt Pv-WmMRQAG rylpe DCUP_HUMAN : 32- 40: etdyt Pv-WcMRQAG rylpe DCUP_MYCLE : 50- 58: kpcrv Pv-WfMRQAG rslpe DCUP_RAT : 29- 37: etdyt Pv-WcMRQAG rylpe DCUP_RHOCA : 18- 27: evlpt PpvWlMRQAG rylpe DCUP_RHOCA : 19- 27: vlptp Pv-WlMRQAG rylpe DCUP_RHOSH : 14- 23: etlpt PsiWlMRQAG pylp DCUP_SYNP7 : 22- 31: evldr PpvWmMRQAG rymkv DCUP_SYNP7 : 23- 31: vldrp Pv-WmMRQAG rymkv DCUP_YEAST : 24- 33: ekver PpcWiMRQAG rylpe DCUP_YEAST : 25- 33: kverp Pc-WiMRQAG rylpe B 2: 27.1562 9( 9) G-x(3,4)-P-x(0,1)-T-[LP]-x(2)-[WY]-x(2)-[ER]-[GQ]-x-[GPS] Occurences: 9(9) DCUP_BACSU : 143- 160: nvpli GfsgaPfTLasYmiEGgP sknyn DCUP_ECOLI : 143- 160: evpli GfsgsPwTLatYmvEGgS skaft DCUP_HUMAN : 153- 170: rvpli GfagaPwTLmtYmvEGgG sstma DCUP_MYCLE : 168- 185: dvpli GfagaPfTLasYlvEGgP srnhp DCUP_RAT : 150- 167: rvpli GfagaPwTLmtYmvEGgS fktma DCUP_RHOCA : 12- 27: lralk Gevl-P-TPpvWlmRQaG rylpe DCUP_RHOSH : 8- 23: lralk Getl-P-TPsiWlmRQaG pylp DCUP_SYNP7 : 144- 161: eaavl GfagaPwTLaaYaiEGkS sktya DCUP_YEAST : 149- 166: evplf GfcggPwTLmvYmtEGgG srlfr C 3: 25.0203 9( 9) W-x-M-R-Q-A-G Occurences: 9(9) DCUP_BACSU : 26- 32: dhtpv WyMRQAG rsqpe DCUP_ECOLI : 24- 30: dvtpv WmMRQAG rylpe DCUP_HUMAN : 34- 40: dytpv WcMRQAG rylpe DCUP_MYCLE : 52- 58: crvpv WfMRQAG rslpe DCUP_RAT : 31- 37: dytpv WcMRQAG rylpe DCUP_RHOCA : 21- 27: ptppv WlMRQAG rylpe DCUP_RHOSH : 17- 23: ptpsi WlMRQAG pylp DCUP_SYNP7 : 25- 31: drppv WmMRQAG rymkv DCUP_YEAST : 27- 33: erppc WiMRQAG rylpe D 4: 21.7048 10( 9) A-x(2,4)-G-E-x(4)-[NPQT]-x(4)-[IMV]-[DHR]-x(2)-[GTV] Occurences: 10(9) DCUP_BACSU : 14- 32: etflk Aar--GEkadhTpvwyMRqaG rsqpe DCUP_ECOLI : 312- 332: vatil AgfghGEghvfNlghgIHqdV ppeha DCUP_HUMAN : 22- 40: dtflr Aaw--GEetdyTpvwcMRqaG rylpe DCUP_MYCLE : 282- 302: lgams AavrsGEkpghQavvgVDwrT sltda DCUP_MYCLE : 283- 302: gamsa Avrs-GEkpghQavvgVDwrT sltda DCUP_RAT : 19- 37: dtflr Aaw--GEetdyTpvwcMRqaG rylpe DCUP_RHOCA : 9- 27: ktilr Alk--GEvlptPpvwlMRqaG rylpe DCUP_RHOSH : 5- 23: tmlr Alk--GEtlptPsiwlMRqaG pylp DCUP_SYNP7 : 13- 31: prllr Aar--GEvldrPpvwmMRqaG rymkv DCUP_YEAST : 15- 33: dlilr Aak--GEkverPpcwiMRqaG rylpe E 5: 20.8503 9( 9) M-R-Q-A-G Occurences: 9(9) DCUP_BACSU : 28- 32: tpvwy MRQAG rsqpe DCUP_ECOLI : 26- 30: tpvwm MRQAG rylpe DCUP_HUMAN : 36- 40: tpvwc MRQAG rylpe DCUP_MYCLE : 54- 58: vpvwf MRQAG rslpe DCUP_RAT : 33- 37: tpvwc MRQAG rylpe DCUP_RHOCA : 23- 27: ppvwl MRQAG rylpe DCUP_RHOSH : 19- 23: psiwl MRQAG pylp DCUP_SYNP7 : 27- 31: ppvwm MRQAG rymkv DCUP_YEAST : 29- 33: ppcwi MRQAG rylpe F 6: 18.9685 9( 9) L-x(0,1)-A-[AGLV]-x-G-[DEHR]-x(4)-[PTV] Occurences: 9(9) DCUP_BACSU : 12- 23: fnetf LkAArGEkadhT pvwym DCUP_ECOLI : 311- 321: evati L-AGfGHgeghV fnlgh DCUP_HUMAN : 20- 31: kndtf LrAAwGEetdyT pvwcm DCUP_MYCLE : 38- 49: lespy LaAVsGRkpcrV pvwfm DCUP_RAT : 17- 28: kndtf LrAAwGEetdyT pvwcm DCUP_RHOCA : 7- 18: tdkti LrALkGEvlptP pvwlm DCUP_RHOSH : 3- 14: tm LrALkGEtlptP siwlm DCUP_SYNP7 : 11- 22: slprl LrAArGEvldrP pvwmm DCUP_YEAST : 13- 24: kndli LrAAkGEkverP pcwim G 7: 17.2053 9( 9) L-x(0,1)-A-x(2)-G-[EHR]-x(4)-[PTV] Occurences: 9(9) DCUP_BACSU : 12- 23: fnetf LkAarGEkadhT pvwym DCUP_ECOLI : 311- 321: evati L-AgfGHgeghV fnlgh DCUP_HUMAN : 20- 31: kndtf LrAawGEetdyT pvwcm DCUP_MYCLE : 38- 49: lespy LaAvsGRkpcrV pvwfm DCUP_RAT : 17- 28: kndtf LrAawGEetdyT pvwcm DCUP_RHOCA : 7- 18: tdkti LrAlkGEvlptP pvwlm DCUP_RHOSH : 3- 14: tm LrAlkGEtlptP siwlm DCUP_SYNP7 : 11- 22: slprl LrAarGEvldrP pvwmm DCUP_YEAST : 13- 24: kndli LrAakGEkverP pcwim H 8: 16.6802 9( 9) R-Q-A-G Occurences: 9(9) DCUP_BACSU : 29- 32: pvwym RQAG rsqpe DCUP_ECOLI : 27- 30: pvwmm RQAG rylpe DCUP_HUMAN : 37- 40: pvwcm RQAG rylpe DCUP_MYCLE : 55- 58: pvwfm RQAG rslpe DCUP_RAT : 34- 37: pvwcm RQAG rylpe DCUP_RHOCA : 24- 27: pvwlm RQAG rylpe DCUP_RHOSH : 20- 23: siwlm RQAG pylp DCUP_SYNP7 : 28- 31: pvwmm RQAG rymkv DCUP_YEAST : 30- 33: pcwim RQAG rylpe I 9: 16.4143 12( 9) T-x(0,1)-L-x-[ASTV]-x(3)-E-x(2)-[DGPS] Occurences: 12(9) DCUP_BACSU : 10- 21: etfne TfLkAargEkaD htpvw DCUP_BACSU : 150- 160: sgapf T-LaSymiEggP sknyn DCUP_ECOLI : 150- 160: sgspw T-LaTymvEggS skaft DCUP_HUMAN : 18- 29: elknd TfLrAawgEetD ytpvw DCUP_HUMAN : 160- 170: agapw T-LmTymvEggG sstma DCUP_MYCLE : 175- 185: agapf T-LaSylvEggP srnhp DCUP_RAT : 15- 26: elknd TfLrAawgEetD ytpvw DCUP_RAT : 157- 167: agapw T-LmTymvEggS fktma DCUP_RHOCA : 5- 16: mtdk TiLrAlkgEvlP tppvw DCUP_RHOSH : 1- 12: TmLrAlkgEtlP tpsiw DCUP_SYNP7 : 151- 161: agapw T-LaAyaiEgkS sktya DCUP_YEAST : 156- 166: cggpw T-LmVymtEggG srlfr J 10: 15.6802 11( 9) M-x(0,1)-R-x(0,1)-A-G Occurences: 11(9) DCUP_BACSU : 28- 32: tpvwy M-RqAG rsqpe DCUP_ECOLI : 25- 30: vtpvw MmRqAG rylpe DCUP_ECOLI : 26- 30: tpvwm M-RqAG rylpe DCUP_HUMAN : 36- 40: tpvwc M-RqAG rylpe DCUP_MYCLE : 54- 58: vpvwf M-RqAG rslpe DCUP_RAT : 33- 37: tpvwc M-RqAG rylpe DCUP_RHOCA : 23- 27: ppvwl M-RqAG rylpe DCUP_RHOSH : 19- 23: psiwl M-RqAG pylp DCUP_SYNP7 : 26- 31: rppvw MmRqAG rymkv DCUP_SYNP7 : 27- 31: ppvwm M-RqAG rymkv DCUP_YEAST : 29- 33: ppcwi M-RqAG rylpe K 11: 14.6045 9( 9) L-x(0,1)-G-[ENQ]-x(2)-P Occurences: 9(9) DCUP_BACSU : 113- 118: adiek L-GQidP eqdvp DCUP_ECOLI : 287- 293: gnkva LqGNmdP smlya DCUP_HUMAN : 301- 307: gktvt LqGNldP calya DCUP_MYCLE : 317- 323: epcta LqGNldP vvlla DCUP_RAT : 298- 304: gktvt LqGEldP calya DCUP_RHOCA : 10- 16: tilra LkGEvlP tppvw DCUP_RHOSH : 6- 12: tmlra LkGEtlP tpsiw DCUP_SYNP7 : 287- 293: gpdig LqGNidP gvlfg DCUP_YEAST : 298- 304: knrvt LqGNldP gvmyg L 12: 14.2103 13( 9) L-x-G-x(3,4)-P-x-[APTV] Occurences: 13(9) DCUP_BACSU : 141- 150: qlnvp LiGfsgaPfT lasym DCUP_ECOLI : 141- 150: kgevp LiGfsgsPwT latym DCUP_HUMAN : 151- 160: agrvp LiGfagaPwT lmtym DCUP_HUMAN : 301- 309: gktvt LqGnld-PcA lyase DCUP_MYCLE : 166- 175: lgdvp LiGfagaPfT lasyl DCUP_MYCLE : 317- 325: epcta LqGnld-PvV llagw DCUP_RAT : 148- 157: agrvp LiGfagaPwT lmtym DCUP_RAT : 298- 306: gktvt LqGeld-PcA lyase DCUP_RHOCA : 10- 18: tilra LkGevl-PtP pvwlm DCUP_RHOSH : 6- 14: tmlra LkGetl-PtP siwlm DCUP_SYNP7 : 287- 295: gpdig LqGnid-PgV lfgsq DCUP_YEAST : 147- 156: dgevp LfGfcggPwT lmvym DCUP_YEAST : 298- 306: knrvt LqGnld-PgV mygsk M 13: 13.7131 15( 9) L-x(2,3)-A-x(0,1)-G-x(2)-[ALPV] Occurences: 15(9) DCUP_BACSU : 12- 20: fnetf Lka-ArGekA dhtpv DCUP_ECOLI : 89- 97: amglg LyfeA-GegP rftsp DCUP_HUMAN : 248- 255: qvkar Lre-A-GlaP vpmii DCUP_HUMAN : 272- 279: falee Laq-A-GyeV vgldw DCUP_MYCLE : 109- 116: divvp Lca-A-GidL divpd DCUP_MYCLE : 156- 165: fqais LlvaAlGdvP ligfa DCUP_MYCLE : 157- 165: qaisl Lva-AlGdvP ligfa DCUP_RAT : 269- 276: falee Laq-A-GyeV vgldw DCUP_RHOCA : 22- 30: tppvw LmrqA-GryL peyra DCUP_RHOCA : 77- 86: fadil LlpqAlGldL wfetg DCUP_RHOCA : 78- 86: adill Lpq-AlGldL wfetg DCUP_RHOSH : 18- 26: tpsiw LmrqA-GpyL p DCUP_SYNP7 : 10- 19: sslpr LlraArGevL drppv DCUP_SYNP7 : 11- 19: slprl Lra-ArGevL drppv DCUP_YEAST : 13- 21: kndli Lra-AkGekV erppc N 14: 13.3994 15( 9) G-x(1,2)-L-x(0,1)-P-[DEGST] Occurences: 15(9) DCUP_BACSU : 285- 290: tktvq Gn-LdPS illap DCUP_ECOLI : 30- 35: mmrqa GryL-PE ykatr DCUP_HUMAN : 40- 45: cmrqa GryL-PE fretr DCUP_HUMAN : 338- 344: yianl GhgLyPD mdpeh DCUP_MYCLE : 58- 63: fmrqa GrsL-PE yralr DCUP_MYCLE : 362- 366: fnlgh Gv-L-PE tdpgv DCUP_RAT : 37- 42: cmrqa GryL-PE fretr DCUP_RAT : 335- 341: yianl GhgLyPD mdpeh DCUP_RHOCA : 12- 17: lralk GevL-PT ppvwl DCUP_RHOCA : 27- 32: lmrqa GryL-PE yratr DCUP_RHOCA : 287- 292: ktcvq Gn-LdPS ymvtg DCUP_RHOSH : 8- 13: lralk GetL-PT psiwl DCUP_SYNP7 : 326- 330: lnlgh Gi-L-PG tpedn DCUP_YEAST : 33- 38: imrqa GryL-PE yhevk DCUP_YEAST : 300- 305: rvtlq Gn-LdPG vmygs O 15: 12.5102 13( 9) Q-A-G Occurences: 13(9) DCUP_BACSU : 30- 32: vwymr QAG rsqpe DCUP_ECOLI : 28- 30: vwmmr QAG rylpe DCUP_ECOLI : 42- 44: katra QAG dfmsl DCUP_HUMAN : 38- 40: vwcmr QAG rylpe DCUP_HUMAN : 274- 276: leela QAG yevvg DCUP_MYCLE : 56- 58: vwfmr QAG rslpe DCUP_RAT : 35- 37: vwcmr QAG rylpe DCUP_RAT : 271- 273: leela QAG yevvg DCUP_RHOCA : 25- 27: vwlmr QAG rylpe DCUP_RHOCA : 39- 41: ratra QAG dflsl DCUP_RHOSH : 21- 23: iwlmr QAG pylp DCUP_SYNP7 : 29- 31: vwmmr QAG rymkv DCUP_YEAST : 31- 33: cwimr QAG rylpe P 16: 12.0102 11( 9) A-x(3,4)-L-P Occurences: 11(9) DCUP_BACSU : 58- 64: qpelc AyvtrLP veqyg DCUP_ECOLI : 29- 34: wmmrq Agry-LP eykat DCUP_ECOLI : 107- 113: pvtck AdvdkLP ipdpe DCUP_HUMAN : 39- 44: wcmrq Agry-LP efret DCUP_MYCLE : 57- 62: wfmrq Agrs-LP eyral DCUP_RAT : 36- 41: wcmrq Agry-LP efret DCUP_RHOCA : 26- 31: wlmrq Agry-LP eyrat DCUP_RHOCA : 73- 79: aailf AdillLP qalgl DCUP_RHOSH : 22- 27: wlmrq Agpy-LP DCUP_SYNP7 : 3- 8: mv Asss-LP rllra DCUP_YEAST : 32- 37: wimrq Agry-LP eyhev Q 17: 12.0102 10( 9) L-x(0,1)-G-x(3)-P Occurences: 10(9) DCUP_BACSU : 113- 118: adiek L-GqidP eqdvp DCUP_ECOLI : 287- 293: gnkva LqGnmdP smlya DCUP_HUMAN : 301- 307: gktvt LqGnldP calya DCUP_MYCLE : 317- 323: epcta LqGnldP vvlla DCUP_RAT : 298- 304: gktvt LqGeldP calya DCUP_RHOCA : 10- 16: tilra LkGevlP tppvw DCUP_RHOSH : 6- 12: tmlra LkGetlP tpsiw DCUP_SYNP7 : 83- 89: diltp LpGmgiP fdiie DCUP_SYNP7 : 287- 293: gpdig LqGnidP gvlfg DCUP_YEAST : 298- 304: knrvt LqGnldP gvmyg R 18: 11.5102 22( 9) A-G-x(2,4)-L Occurences: 22(9) DCUP_BACSU : 252- 258: gashl AGdwhdL pldvv DCUP_ECOLI : 29- 33: wmmrq AGry--L peyka DCUP_ECOLI : 43- 49: atraq AGdfmsL cknae DCUP_HUMAN : 39- 43: wcmrq AGry--L pefre DCUP_HUMAN : 146- 151: trqrl AGrvp-L igfag DCUP_HUMAN : 155- 161: pligf AGapwtL mtymv DCUP_HUMAN : 209- 214: vgqvv AGaqa-L qlfes DCUP_MYCLE : 57- 61: wfmrq AGrs--L peyra DCUP_MYCLE : 112- 116: vplca AGid--L divpd DCUP_MYCLE : 170- 176: pligf AGapftL asylv DCUP_MYCLE : 236- 241: vfdsw AGtls-L sdyrq DCUP_MYCLE : 353- 359: vvaga AGhvfnL ghgvl DCUP_RAT : 36- 40: wcmrq AGry--L pefre DCUP_RAT : 143- 148: trqql AGrvp-L igfag DCUP_RAT : 152- 158: pligf AGapwtL mtymv DCUP_RAT : 206- 211: igqva AGaqa-L qlfes DCUP_RHOCA : 26- 30: wlmrq AGry--L peyra DCUP_RHOCA : 40- 44: atraq AGdf--L slcyt DCUP_RHOCA : 40- 46: atraq AGdflsL cytpd DCUP_RHOSH : 22- 26: wlmrq AGpy--L p DCUP_SYNP7 : 146- 152: avlgf AGapwtL aayai DCUP_YEAST : 32- 36: wimrq AGry--L peyhe DCUP_YEAST : 205- 210: sqqvv AGaqi-L qvfes S 19: 11.5102 12( 9) L-x(4)-G-x(0,2)-P Occurences: 12(9) DCUP_BACSU : 141- 148: qlnvp LigfsGa-P ftlas DCUP_ECOLI : 89- 97: amglg LyfeaGegP rftsp DCUP_ECOLI : 141- 148: kgevp LigfsGs-P wtlat DCUP_HUMAN : 151- 158: agrvp LigfaGa-P wtlmt DCUP_MYCLE : 38- 46: lespy LaavsGrkP crvpv DCUP_MYCLE : 157- 165: qaisl LvaalGdvP ligfa DCUP_MYCLE : 166- 173: lgdvp LigfaGa-P ftlas DCUP_RAT : 148- 155: agrvp LigfaGa-P wtlmt DCUP_RHOCA : 86- 94: algld LwfetGegP rmstv DCUP_RHOSH : 18- 24: tpsiw LmrqaG--P ylp DCUP_SYNP7 : 321- 329: nqrhi LnlghGilP gtped DCUP_YEAST : 147- 154: dgevp LfgfcGg-P wtlmv T 20: 11.5102 12( 9) G-x(2,4)-L-P Occurences: 12(9) DCUP_BACSU : 253- 259: ashla GdwhdLP ldvvg DCUP_ECOLI : 30- 34: mmrqa Gry--LP eykat DCUP_HUMAN : 40- 44: cmrqa Gry--LP efret DCUP_MYCLE : 58- 62: fmrqa Grs--LP eyral DCUP_MYCLE : 360- 365: hvfnl Ghgv-LP etdpg DCUP_RAT : 37- 41: cmrqa Gry--LP efret DCUP_RHOCA : 12- 16: lralk Gev--LP tppvw DCUP_RHOCA : 27- 31: lmrqa Gry--LP eyrat DCUP_RHOSH : 8- 12: lralk Get--LP tpsiw DCUP_RHOSH : 23- 27: lmrqa Gpy--LP DCUP_SYNP7 : 324- 329: hilnl Ghgi-LP gtped DCUP_YEAST : 33- 37: imrqa Gry--LP eyhev Number of patterns evaluated by Pratt:573 Total running time: 1 seconds