------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file URICASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename URICASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: URIC_ASPFL 301 URIC_DROME 352 URIC_DROPS 345 URIC_DROVI 342 URIC_MOUSE 302 URIC_PAPHA 303 URIC_PIG 303 URIC_RABIT 300 URIC_RAT 302 URIC_SOYBN 309 Pratt run started at Thu Feb 6 21:32:21 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 53.7107 10( 10) L-x(1,2)-L-K-x-T-x-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 2: 50.0406 10( 10) L-K-x-T-x-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 3: 50.0406 10( 10) V-x-K-x-T-x-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 4: 45.8706 10( 10) K-x-T-x-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 5: 44.8706 10( 10) K-x(0,1)-T-x(1,2)-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 6: 41.7005 10( 10) T-x-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 7: 41.7005 10( 10) Y-x(4)-N-S-x(4)-T-D-x(2)-K-N-T-x(4)-A-K 8: 41.2005 19( 10) T-x(1,2)-S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 9: 40.7005 13( 10) Y-x(2,4)-N-S-x(4)-T-D-x(2)-K-N-T-x(4)-A-K 10: 40.2005 10( 10) T-x(1,2)-Q-x(0,2)-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 11: 37.5305 10( 10) S-x-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 12: 37.5305 10( 10) N-S-x(4)-T-D-x(2)-K-N-T-x(4)-A-K 13: 36.5305 10( 10) Q-x(0,2)-F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 14: 33.3604 10( 10) F-x(2)-F-x(2)-D-x(4)-L-x(5)-R-x(3)-T-x-V-x(3)-W 15: 33.3604 10( 10) S-x(4)-T-D-x(2)-K-N-T-x(4)-A-K 16: 32.3604 10( 10) V-x(2)-P-x(3)-P-x-G-x-I-x(5)-R-x(2,4)-S-x-L 17: 29.1904 10( 10) T-D-x(2)-K-N-T-x(4)-A-K 18: 28.1904 10( 10) V-x(2)-P-x(1,2)-D-x(0,1)-P-x-G-x-I-x(5)-R 19: 27.6904 10( 10) D-x(0,1)-P-x-G-x-I-x(5)-R-x(2,4)-S-x-L 20: 27.6904 10( 10) P-x(3)-P-x-G-x-I-x(5)-R-x(2,4)-S-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 97.7510 10( 10) L-x(1,2)-L-K-[ST]-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] B 2: 90.9056 10( 10) L-K-x-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] C 3: 90.9056 10( 10) V-x-K-x-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] D 4: 89.9109 10( 10) K-[ST]-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] E 5: 82.5655 10( 10) T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] F 6: 82.5649 10( 10) K-x(0,1)-T-x(1,2)-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] G 7: 78.8949 19( 10) T-x(1,2)-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] H 8: 75.2330 10( 10) T-x(1,2)-Q-x(0,2)-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] I 9: 75.2248 10( 10) S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] J 10: 74.8581 10( 10) Y-x(2)-[ADG]-[DN]-N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] K 11: 71.5629 10( 10) Q-x(0,2)-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] L 12: 68.3929 10( 10) F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] M 13: 68.0460 13( 10) Y-x(2,4)-N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] N 14: 64.8760 10( 10) N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] O 15: 60.7059 10( 10) S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] P 16: 46.7575 10( 10) V-x(2)-P-x-[DS]-x-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-[HKR]-L Q 17: 43.6764 10( 10) T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] R 18: 39.3938 10( 10) P-x-[DS]-x-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-x(1,2)-L S 19: 39.3707 10( 10) V-x-[AIL]-P-x(1,2)-D-x(0,1)-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R T 20: 38.8898 10( 10) D-x(0,1)-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-[HKR]-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 97.7510 10( 10) L-x(1,2)-L-K-[ST]-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 149- 192: sslsg LtvLKSTNSQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 204- 247: tgikg LrvLKTTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 197- 240: tgikg LrvLKTTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 194- 237: sgikg LrvLKTTQSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 159- 202: sgikd LkvLKTTQSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 159- 202: sgikd LkvLKTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 159- 202: sgikd LkvLKTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 156- 199: sgikd LkvLKTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 159- 202: sgikd LkvLKTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 156- 199: sgieg LsvLKTTQSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp B 2: 90.9056 10( 10) L-K-x-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 152- 192: sgltv LKsTNSQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 207- 247: kglrv LKtTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 200- 240: kglrv LKtTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 197- 237: kglrv LKtTQSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 162- 202: kdlkv LKtTQSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 162- 202: kdlkv LKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 162- 202: kdlkv LKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 159- 199: kdlkv LKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 162- 202: kdlkv LKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 159- 199: eglsv LKtTQSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp C 3: 90.9056 10( 10) V-x-K-x-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 151- 192: lsglt VlKsTNSQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 206- 247: ikglr VlKtTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 199- 240: ikglr VlKtTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 196- 237: ikglr VlKtTQSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 161- 202: ikdlk VlKtTQSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 161- 202: ikdlk VlKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 161- 202: ikdlk VlKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 158- 199: ikdlk VlKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 161- 202: ikdlk VlKtTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 158- 199: iegls VlKtTQSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp D 4: 89.9109 10( 10) K-[ST]-T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 153- 192: gltvl KSTNSQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 208- 247: glrvl KTTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 201- 240: glrvl KTTQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 198- 237: glrvl KTTQSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 163- 202: dlkvl KTTQSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 163- 202: dlkvl KTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 163- 202: dlkvl KTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 160- 199: dlkvl KTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 163- 202: dlkvl KTTQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 160- 199: glsvl KTTQSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp E 5: 82.5655 10( 10) T-[NQ]-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 155- 192: tvlks TNSQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 210- 247: rvlkt TQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 203- 240: rvlkt TQSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 200- 237: rvlkt TQSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 165- 202: kvlkt TQSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 165- 202: kvlkt TQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 165- 202: kvlkt TQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 162- 199: kvlkt TQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 165- 202: kvlkt TQSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 162- 199: svlkt TQSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp F 6: 82.5649 10( 10) K-x(0,1)-T-x(1,2)-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 153- 192: gltvl KsTn-SQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 208- 247: glrvl KtTq-SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROME : 208- 247: glrvl K-TtqSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 201- 240: glrvl KtTq-SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROPS : 201- 240: glrvl K-TtqSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 198- 237: glrvl KtTq-SSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_DROVI : 198- 237: glrvl K-TtqSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 163- 202: dlkvl KtTq-SGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_MOUSE : 163- 202: dlkvl K-TtqSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 163- 202: dlkvl KtTq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PAPHA : 163- 202: dlkvl K-TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 163- 202: dlkvl KtTq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_PIG : 163- 202: dlkvl K-TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 160- 199: dlkvl KtTq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RABIT : 160- 199: dlkvl K-TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 163- 202: dlkvl KtTq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_RAT : 163- 202: dlkvl K-TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 160- 199: glsvl KtTq-SGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp URIC_SOYBN : 160- 199: glsvl K-TtqSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp G 7: 78.8949 19( 10) T-x(1,2)-S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 19(10) URIC_ASPFL : 155- 192: tvlks Tn-SQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 209- 247: lrvlk TtqSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROME : 210- 247: rvlkt Tq-SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 202- 240: lrvlk TtqSSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROPS : 203- 240: rvlkt Tq-SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 199- 237: lrvlk TtqSSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_DROVI : 200- 237: rvlkt Tq-SSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 164- 202: lkvlk TtqSGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_MOUSE : 165- 202: kvlkt Tq-SGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 164- 202: lkvlk TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PAPHA : 165- 202: kvlkt Tq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 164- 202: lkvlk TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_PIG : 165- 202: kvlkt Tq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 161- 199: lkvlk TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RABIT : 162- 199: kvlkt Tq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 164- 202: lkvlk TtqSGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_RAT : 165- 202: kvlkt Tq-SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 161- 199: lsvlk TtqSGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp URIC_SOYBN : 162- 199: svlkt Tq-SGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp H 8: 75.2330 10( 10) T-x(1,2)-Q-x(0,2)-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 155- 192: tvlks TnsQ--FwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 209- 247: lrvlk Tt-QssFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 202- 240: lrvlk Tt-QssFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 199- 237: lrvlk Tt-QssFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 164- 202: lkvlk Tt-QsgFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 164- 202: lkvlk Tt-QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 164- 202: lkvlk Tt-QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 161- 199: lkvlk Tt-QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 164- 202: lkvlk Tt-QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 161- 199: lsvlk Tt-QsgFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp I 9: 75.2248 10( 10) S-[GQS]-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 157- 192: lkstn SQFwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 212- 247: lkttq SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 205- 240: lkttq SSFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 202- 237: lkttq SSFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 167- 202: lkttq SGFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 167- 202: lkttq SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 167- 202: lkttq SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 164- 199: lkttq SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 167- 202: lkttq SGFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 164- 199: lkttq SGFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp J 10: 74.8581 10( 10) Y-x(2)-[ADG]-[DN]-N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] Occurences: 10(10) URIC_ASPFL : 46- 77: eiets YtkADNSVIVATDSiKNTIyItAKqnPvtppE lfgsi URIC_DROME : 75- 106: yskkd YyqGNNSDIVATDSqKNTVyLlAKkhGiespE kfall URIC_DROPS : 73- 104: yskkd YyqGNNSDIVATDSqKNTVyLlAKkyGiespE kfalm URIC_DROVI : 69- 100: ysnkd YmlGNNSDVVATDSqKNTVyLlAKkhGiespE kfali URIC_MOUSE : 56- 87: rskkd YlhGDNSDIIPTDTiKNTVhVlAKlrGirniE tfamn URIC_PAPHA : 56- 87: sskkd YlhGDNSDIIPTDTiKNTVhVlAKfkGiksiE afgvn URIC_PIG : 56- 87: sskkd YlhGDNSDVIPTDTiKNTVnVlAKfkGiksiE tfavt URIC_RABIT : 53- 84: sskqd YvyGDNSDIIPTDTiKNTVhVlAKfkGiksiE vfamn URIC_RAT : 56- 87: rskkd YlhGDNSDIIPTDTiKNTVhVlAKfkGiksiE tfamn URIC_SOYBN : 53- 84: dcvns YlrDDNSDIVATDTmKNTVyAkAKecSdilsA eefai K 11: 71.5629 10( 10) Q-x(0,2)-F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 158- 192: kstns Q--FwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 211- 247: vlktt QssFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 204- 240: vlktt QssFvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 201- 237: vlktt QssFvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 166- 202: vlktt QsgFeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 166- 202: vlktt QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 166- 202: vlktt QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 163- 199: vlktt QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 166- 202: vlktt QsgFeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 163- 199: vlktt QsgFvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp L 12: 68.3929 10( 10) F-x-[GN]-F-[ILV]-x-D-x-[FY]-x-[AST]-L-x-[DE]-x(2)-[DE]-R-x-[FLV]-[AS]-T-x-V-x-[AC]-x-W-[EQR]-[WY]-x(3)-[DEQRS] Occurences: 10(10) URIC_ASPFL : 159- 192: stnsq FwGFLrDeYtTLkEtwDRiLSTdVdAtWQWknfS glqev URIC_DROME : 214- 247: ttqss FvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE nldfl URIC_DROPS : 207- 240: ttqss FvNFVnDeFrSLpDqyDRiFSTvVdCsWEYsdtE tvnfs URIC_DROVI : 204- 237: ttqss FvNFVdDeFrTLaDqyDRiFSTvVeCsWEYsdtE svnfl URIC_MOUSE : 169- 202: ttqsg FeGFLkDqFtTLpEvkDRcFATqVyCkWRYqrrD vdfea URIC_PAPHA : 169- 202: ttqsg FeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqcR dvdfe URIC_PIG : 169- 202: ttqsg FeGFIkDqFtTLpEvkDRcFATqVyCkWRYhqgR dvdfe URIC_RABIT : 166- 199: ttqsg FeGFIkDqFtTLpEvkDRcFATqVyCkWRYqhsQ dvdfe URIC_RAT : 169- 202: ttqsg FeGFIkDqFtTLpEvkDRcFATqVyCkWRYqnrD vdfea URIC_SOYBN : 166- 199: ttqsg FvNFIrDkYtALpDtrERmVATeVtAlWRYsyeS lyslp M 13: 68.0460 13( 10) Y-x(2,4)-N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] Occurences: 13(10) URIC_ASPFL : 46- 77: eiets YtkadNSVIVATDSiKNTIyItAKqnPvtppE lfgsi URIC_DROME : 75- 106: yskkd YyqgnNSDIVATDSqKNTVyLlAKkhGiespE kfall URIC_DROME : 76- 106: skkdy Yqgn-NSDIVATDSqKNTVyLlAKkhGiespE kfall URIC_DROPS : 73- 104: yskkd YyqgnNSDIVATDSqKNTVyLlAKkyGiespE kfalm URIC_DROPS : 74- 104: skkdy Yqgn-NSDIVATDSqKNTVyLlAKkyGiespE kfalm URIC_DROVI : 69- 100: ysnkd YmlgnNSDVVATDSqKNTVyLlAKkhGiespE kfali URIC_MOUSE : 56- 87: rskkd YlhgdNSDIIPTDTiKNTVhVlAKlrGirniE tfamn URIC_PAPHA : 56- 87: sskkd YlhgdNSDIIPTDTiKNTVhVlAKfkGiksiE afgvn URIC_PIG : 56- 87: sskkd YlhgdNSDVIPTDTiKNTVnVlAKfkGiksiE tfavt URIC_RABIT : 53- 84: sskqd YvygdNSDIIPTDTiKNTVhVlAKfkGiksiE vfamn URIC_RABIT : 55- 84: kqdyv Ygd--NSDIIPTDTiKNTVhVlAKfkGiksiE vfamn URIC_RAT : 56- 87: rskkd YlhgdNSDIIPTDTiKNTVhVlAKfkGiksiE tfamn URIC_SOYBN : 53- 84: dcvns YlrddNSDIVATDTmKNTVyAkAKecSdilsA eefai N 14: 64.8760 10( 10) N-S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] Occurences: 10(10) URIC_ASPFL : 51- 77: ytkad NSVIVATDSiKNTIyItAKqnPvtppE lfgsi URIC_DROME : 80- 106: yyqgn NSDIVATDSqKNTVyLlAKkhGiespE kfall URIC_DROPS : 78- 104: yyqgn NSDIVATDSqKNTVyLlAKkyGiespE kfalm URIC_DROVI : 74- 100: ymlgn NSDVVATDSqKNTVyLlAKkhGiespE kfali URIC_MOUSE : 61- 87: ylhgd NSDIIPTDTiKNTVhVlAKlrGirniE tfamn URIC_PAPHA : 61- 87: ylhgd NSDIIPTDTiKNTVhVlAKfkGiksiE afgvn URIC_PIG : 61- 87: ylhgd NSDVIPTDTiKNTVnVlAKfkGiksiE tfavt URIC_RABIT : 58- 84: yvygd NSDIIPTDTiKNTVhVlAKfkGiksiE vfamn URIC_RAT : 61- 87: ylhgd NSDIIPTDTiKNTVhVlAKfkGiksiE tfamn URIC_SOYBN : 58- 84: ylrdd NSDIVATDTmKNTVyAkAKecSdilsA eefai O 15: 60.7059 10( 10) S-[DV]-[IV]-[IV]-[AP]-T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] Occurences: 10(10) URIC_ASPFL : 52- 77: tkadn SVIVATDSiKNTIyItAKqnPvtppE lfgsi URIC_DROME : 81- 106: yqgnn SDIVATDSqKNTVyLlAKkhGiespE kfall URIC_DROPS : 79- 104: yqgnn SDIVATDSqKNTVyLlAKkyGiespE kfalm URIC_DROVI : 75- 100: mlgnn SDVVATDSqKNTVyLlAKkhGiespE kfali URIC_MOUSE : 62- 87: lhgdn SDIIPTDTiKNTVhVlAKlrGirniE tfamn URIC_PAPHA : 62- 87: lhgdn SDIIPTDTiKNTVhVlAKfkGiksiE afgvn URIC_PIG : 62- 87: lhgdn SDVIPTDTiKNTVnVlAKfkGiksiE tfavt URIC_RABIT : 59- 84: vygdn SDIIPTDTiKNTVhVlAKfkGiksiE vfamn URIC_RAT : 62- 87: lhgdn SDIIPTDTiKNTVhVlAKfkGiksiE tfamn URIC_SOYBN : 59- 84: lrddn SDIVATDTmKNTVyAkAKecSdilsA eefai P 16: 46.7575 10( 10) V-x(2)-P-x-[DS]-x-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-[HKR]-L Occurences: 10(10) URIC_ASPFL : 277- 301: gknae VfaPqSdPnGlIkCTVgRsslkSKL URIC_DROME : 328- 352: gdnne VfiPvDkPhGtIyAQLaRkninSHL URIC_DROPS : 321- 345: gdnne VfiPvDkPhGtIyAQLaRknisSHL URIC_DROVI : 318- 342: genne VfiPtDkPhGtIyAQLsRkslkSHL URIC_MOUSE : 279- 302: inkee VllPlDnPyGkItGTVkRklp-SRL URIC_PAPHA : 280- 303: inkee VllPlDnPyGkItGTVkRkls-SRL URIC_PIG : 280- 303: inkee VllPlDnPyGrItGTVkRklt-SRL URIC_RABIT : 277- 300: inkee VllPlDnPyGkItGTVkRkls-SRL URIC_RAT : 279- 302: inkee VllPlDnPyGkItGTVrRklp-SRL URIC_SOYBN : 287- 309: kfedd VylPtDePhGsIqASLsRlw--SKL Q 17: 43.6764 10( 10) T-D-[ST]-x-K-N-T-[IV]-x-[AILV]-x-A-K-x(2)-[GPS]-x(4)-[AE] Occurences: 10(10) URIC_ASPFL : 57- 77: sviva TDSiKNTIyItAKqnPvtppE lfgsi URIC_DROME : 86- 106: sdiva TDSqKNTVyLlAKkhGiespE kfall URIC_DROPS : 84- 104: sdiva TDSqKNTVyLlAKkyGiespE kfalm URIC_DROVI : 80- 100: sdvva TDSqKNTVyLlAKkhGiespE kfali URIC_MOUSE : 67- 87: sdiip TDTiKNTVhVlAKlrGirniE tfamn URIC_PAPHA : 67- 87: sdiip TDTiKNTVhVlAKfkGiksiE afgvn URIC_PIG : 67- 87: sdvip TDTiKNTVnVlAKfkGiksiE tfavt URIC_RABIT : 64- 84: sdiip TDTiKNTVhVlAKfkGiksiE vfamn URIC_RAT : 67- 87: sdiip TDTiKNTVhVlAKfkGiksiE tfamn URIC_SOYBN : 64- 84: sdiva TDTmKNTVyAkAKecSdilsA eefai R 18: 39.3938 10( 10) P-x-[DS]-x-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-x(1,2)-L Occurences: 10(10) URIC_ASPFL : 280- 301: aevfa PqSdPnGlIkCTVgRsslkSk-L URIC_DROME : 331- 352: nevfi PvDkPhGtIyAQLaRkninSh-L URIC_DROPS : 324- 345: nevfi PvDkPhGtIyAQLaRknisSh-L URIC_DROPS : 324- 345: nevfi PvDkPhGtIyAQLaRkni-SshL URIC_DROVI : 321- 342: nevfi PtDkPhGtIyAQLsRkslkSh-L URIC_MOUSE : 282- 302: eevll PlDnPyGkItGTVkRklp-Sr-L URIC_PAPHA : 283- 303: eevll PlDnPyGkItGTVkRkls-Sr-L URIC_PAPHA : 283- 303: eevll PlDnPyGkItGTVkRkl--SsrL URIC_PIG : 283- 303: eevll PlDnPyGrItGTVkRklt-Sr-L URIC_RABIT : 280- 300: eevll PlDnPyGkItGTVkRkls-Sr-L URIC_RABIT : 280- 300: eevll PlDnPyGkItGTVkRkl--SsrL URIC_RAT : 282- 302: eevll PlDnPyGkItGTVrRklp-Sr-L URIC_SOYBN : 290- 309: ddvyl PtDePhGsIqASLsRlw--Sk-L S 19: 39.3707 10( 10) V-x-[AIL]-P-x(1,2)-D-x(0,1)-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R Occurences: 10(10) URIC_ASPFL : 277- 294: gknae VfAPqsD-PnGlIkCTVgR sslks URIC_DROME : 328- 345: gdnne VfIPv-DkPhGtIyAQLaR knins URIC_DROPS : 321- 338: gdnne VfIPv-DkPhGtIyAQLaR kniss URIC_DROVI : 318- 335: genne VfIPt-DkPhGtIyAQLsR kslks URIC_MOUSE : 279- 296: inkee VlLPl-DnPyGkItGTVkR klpsr URIC_PAPHA : 280- 297: inkee VlLPl-DnPyGkItGTVkR klssr URIC_PIG : 280- 297: inkee VlLPl-DnPyGrItGTVkR kltsr URIC_RABIT : 277- 294: inkee VlLPl-DnPyGkItGTVkR klssr URIC_RAT : 279- 296: inkee VlLPl-DnPyGkItGTVrR klpsr URIC_SOYBN : 287- 304: kfedd VyLPt-DePhGsIqASLsR lwskl T 20: 38.8898 10( 10) D-x(0,1)-P-x-G-x-I-x-[ACG]-[QST]-[LV]-x-R-x(2,4)-S-[HKR]-L Occurences: 10(10) URIC_ASPFL : 283- 301: fapqs D-PnGlIkCTVgRsslkSKL URIC_DROME : 333- 352: vfipv DkPhGtIyAQLaRkninSHL URIC_DROPS : 326- 345: vfipv DkPhGtIyAQLaRknisSHL URIC_DROVI : 323- 342: vfipt DkPhGtIyAQLsRkslkSHL URIC_MOUSE : 284- 302: vllpl DnPyGkItGTVkRklp-SRL URIC_PAPHA : 285- 303: vllpl DnPyGkItGTVkRkls-SRL URIC_PIG : 285- 303: vllpl DnPyGrItGTVkRklt-SRL URIC_RABIT : 282- 300: vllpl DnPyGkItGTVkRkls-SRL URIC_RAT : 284- 302: vllpl DnPyGkItGTVrRklp-SRL URIC_SOYBN : 292- 309: vylpt DePhGsIqASLsRlw--SKL Number of patterns evaluated by Pratt:8512 Total running time: 5 seconds