------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file UCH_2_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename UCH_2_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TGT_RABIT 493 TRE2_HUMAN 1089 UBP1_YEAST 809 UBP2_YEAST 1264 UBP3_YEAST 912 UBP4_YEAST 926 UBP5_YEAST 805 UBPA_SCHPO 449 UBPB_YEAST 688 UBPC_YEAST 803 UBPE_YEAST 754 UBPF_YEAST 499 UBPI_YEAST 1071 UBPJ_YEAST 1254 UBPK_YEAST 717 UBPX_CAEEL 408 UBPX_HUMAN 1118 UBP_MOUSE 794 Pratt run started at Thu Feb 6 21:31:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 18( 18) Y-x-L-x(5)-H-x-G 2: 12.5102 18( 18) G-H-Y 3: 12.5102 19( 18) L-x(5)-H-x-G 4: 12.5102 19( 18) Q-D-x(2)-E 5: 12.0102 28( 18) L-x(3,4)-L-x(5)-R 6: 12.0102 24( 18) K-x(5)-L-x(3,4)-L 7: 12.0102 27( 18) D-x(2)-E-x(4,5)-L 8: 12.0102 23( 18) Q-x-D-x(1,2)-E 9: 12.0102 38( 18) Q-x(0,1)-D-x(2)-E 10: 12.0102 46( 18) L-x(3)-L-x(2,3)-L 11: 11.5102 46( 18) L-x(3,4)-L-x(0,1)-R 12: 11.5102 50( 18) S-x(1,2)-L-x(3,4)-L 13: 11.5102 50( 18) S-x(1,2)-S-x(0,1)-K 14: 11.5102 44( 18) L-x(3)-L-x(0,2)-K 15: 11.5102 35( 18) L-x(3)-L-x(3,5)-R 16: 11.5102 33( 18) F-x(3,4)-L-x(3,4)-L 17: 11.5102 37( 18) F-x(3,4)-L-x(2,3)-L 18: 11.5102 87( 18) S-x(3,4)-S-x(1,2)-S 19: 11.5102 58( 18) K-x(0,1)-S-x(1,2)-S 20: 11.5102 37( 18) L-x(1,2)-K-x(2,3)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.8664 33( 18) Q-x(0,1)-D-[ACGSTV]-x-E-x(4)-[ILMV]-[FILM]-x(2)-[FILM] B 2: 19.2736 18( 18) Y-x-L-x-[AGS]-x(3)-H-x-G C 3: 15.1035 18( 18) L-x-[AGS]-x(3)-H-x-G D 4: 14.6885 20( 18) Q-[EGQ]-D-x(1,2)-E E 5: 13.6558 18( 18) D-[ACGSTV]-x-E-x(4,5)-L F 6: 12.5102 18( 18) G-H-Y G 7: 12.5102 19( 18) Q-D-x(2)-E H 8: 12.0102 28( 18) L-x(3,4)-L-x(5)-R I 9: 12.0102 24( 18) K-x(5)-L-x(3,4)-L J 10: 12.0102 46( 18) L-x(3)-L-x(2,3)-L K 11: 11.5102 46( 18) L-x(3,4)-L-x(0,1)-R L 12: 11.5102 50( 18) S-x(1,2)-L-x(3,4)-L M 13: 11.5102 50( 18) S-x(1,2)-S-x(0,1)-K N 14: 11.5102 44( 18) L-x(3)-L-x(0,2)-K O 15: 11.5102 35( 18) L-x(3)-L-x(3,5)-R P 16: 11.5102 33( 18) F-x(3,4)-L-x(3,4)-L Q 17: 11.5102 37( 18) F-x(3,4)-L-x(2,3)-L R 18: 11.5102 87( 18) S-x(3,4)-S-x(1,2)-S S 19: 11.5102 58( 18) K-x(0,1)-S-x(1,2)-S T 20: 11.5102 37( 18) L-x(1,2)-K-x(2,3)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.8664 33( 18) Q-x(0,1)-D-[ACGSTV]-x-E-x(4)-[ILMV]-[FILM]-x(2)-[FILM] Occurences: 33(18) TGT_RABIT : 197- 211: qgqyl QqDAnEcwiqMMrvL qqkle TGT_RABIT : 198- 211: gqylq Q-DAnEcwiqMMrvL qqkle TRE2_HUMAN : 304- 318: fdgfq QqDSqEllafLLdgL hedln TRE2_HUMAN : 305- 318: dgfqq Q-DSqEllafLLdgL hedln UBP1_YEAST : 244- 258: llgyd QeDAqEffqnILaeL esnvk UBP2_YEAST : 930- 944: lemgr QqDVtEcignVLfqI esgse UBP2_YEAST : 931- 944: emgrq Q-DVtEcignVLfqI esgse UBP3_YEAST : 583- 597: lqwgh QeDAeEflthLLdqL heeli UBP4_YEAST : 656- 670: fktas QqDCqEfcqfLLdgL hedln UBP4_YEAST : 657- 670: ktasq Q-DCqEfcqfLLdgL hedln UBP5_YEAST : 543- 557: ysdsm QqDCqEfcqfLLdgL hedln UBP5_YEAST : 544- 557: sdsmq Q-DCqEfcqfLLdgL hedln UBPA_SCHPO : 231- 245: lcgys QqDGhEffvyLLdqM htesg UBPA_SCHPO : 232- 245: cgysq Q-DGhEffvyLLdqM htesg UBPB_YEAST : 432- 445: nttmh Q-DAhEffnfLLneL seyie UBPC_YEAST : 434- 448: fssnr QqDAmEfltfLLdlL dkkff UBPC_YEAST : 435- 448: ssnrq Q-DAmEfltfLLdlL dkkff UBPE_YEAST : 433- 447: fntmm QqDAhEflnfLLndF seyiq UBPE_YEAST : 434- 447: ntmmq Q-DAhEflnfLLndF seyiq UBPF_YEAST : 207- 221: ggfyk QqDAeElftqLFhsM sivfg UBPF_YEAST : 208- 221: gfykq Q-DAeElftqLFhsM sivfg UBPI_YEAST : 701- 715: kipdd QqDTqEflmiLLdrL hdels UBPI_YEAST : 702- 715: ipddq Q-DTqEflmiLLdrL hdels UBPJ_YEAST : 459- 473: fsgym QqDSqEflafLLdsL hedln UBPJ_YEAST : 460- 473: sgymq Q-DSqEflafLLdsL hedln UBPK_YEAST : 387- 401: nipdd QqDTqEflliVLarI heels UBPK_YEAST : 388- 401: ipddq Q-DTqEflliVLarI heels UBPX_CAEEL : 112- 126: fdnym QqDAhEffnyLIntI setli UBPX_CAEEL : 113- 126: dnymq Q-DAhEffnyLIntI setli UBPX_HUMAN : 866- 880: fagys QqDSqElllfLMdgL hedln UBPX_HUMAN : 867- 880: agysq Q-DSqElllfLMdgL hedln UBP_MOUSE : 223- 237: fsgyq QqDSqEllafILdgL hedln UBP_MOUSE : 224- 237: sgyqq Q-DSqEllafILdgL hedln B 2: 19.2736 18( 18) Y-x-L-x-[AGS]-x(3)-H-x-G Occurences: 18(18) TGT_RABIT : 417- 427: nncgy YdLqAvltHqG rssss TRE2_HUMAN : 995- 1005: hikpi YnLyAiscHsG ilsgg UBP1_YEAST : 681- 691: atplt YsLrSvivHyG thnyg UBP2_YEAST : 1185- 1195: fkeyg YsLfSvfiHrG easyg UBP3_YEAST : 844- 854: iddrr YkLtGviyHhG vssdg UBP4_YEAST : 864- 874: ippfk YeLyGvacHfG tlygg UBP5_YEAST : 745- 755: vppfr YrLyGvacHsG slygg UBPA_SCHPO : 379- 389: qddvd YqLySvvcHkG tldtg UBPB_YEAST : 602- 612: kvcqk YeLaGivvHmG ggpqh UBPC_YEAST : 742- 752: stakp YaLtAvicHkG nsvhs UBPE_YEAST : 601- 611: svykk YeLsGvviHmG sgpqh UBPF_YEAST : 430- 440: npscv YnLiGvitHqG anses UBPI_YEAST : 998- 1008: ndtmk YkLfGvvnHtG tlisg UBPJ_YEAST : 1052- 1062: prgli YdLyAvdnHyG glggg UBPK_YEAST : 633- 643: gkvir YkLyGtvnHsG nling UBPX_CAEEL : 323- 333: ygdrm YdLvAtvvHcG atpnr UBPX_HUMAN : 1051- 1061: nnlkk YnLfSvsnHyG gldgg UBP_MOUSE : 696- 706: arpyv YdLiAvsnHyG amgvg C 3: 15.1035 18( 18) L-x-[AGS]-x(3)-H-x-G Occurences: 18(18) TGT_RABIT : 419- 427: cgyyd LqAvltHqG rssss TRE2_HUMAN : 997- 1005: kpiyn LyAiscHsG ilsgg UBP1_YEAST : 683- 691: pltys LrSvivHyG thnyg UBP2_YEAST : 1187- 1195: eygys LfSvfiHrG easyg UBP3_YEAST : 846- 854: drryk LtGviyHhG vssdg UBP4_YEAST : 866- 874: pfkye LyGvacHfG tlygg UBP5_YEAST : 747- 755: pfryr LyGvacHsG slygg UBPA_SCHPO : 381- 389: dvdyq LySvvcHkG tldtg UBPB_YEAST : 604- 612: cqkye LaGivvHmG ggpqh UBPC_YEAST : 744- 752: akpya LtAvicHkG nsvhs UBPE_YEAST : 603- 611: ykkye LsGvviHmG sgpqh UBPF_YEAST : 432- 440: scvyn LiGvitHqG anses UBPI_YEAST : 1000- 1008: tmkyk LfGvvnHtG tlisg UBPJ_YEAST : 1054- 1062: gliyd LyAvdnHyG glggg UBPK_YEAST : 635- 643: viryk LyGtvnHsG nling UBPX_CAEEL : 325- 333: drmyd LvAtvvHcG atpnr UBPX_HUMAN : 1053- 1061: lkkyn LfSvsnHyG gldgg UBP_MOUSE : 698- 706: pyvyd LiAvsnHyG amgvg D 4: 14.6885 20( 18) Q-[EGQ]-D-x(1,2)-E Occurences: 20(18) TGT_RABIT : 197- 202: qgqyl QQDanE cwiqm TRE2_HUMAN : 304- 309: fdgfq QQDsqE llafl UBP1_YEAST : 244- 249: llgyd QEDaqE ffqni UBP1_YEAST : 527- 532: kekaa QQDssE denig UBP2_YEAST : 930- 935: lemgr QQDvtE cignv UBP3_YEAST : 583- 587: lqwgh QEDa-E eflth UBP3_YEAST : 583- 588: lqwgh QEDaeE flthl UBP4_YEAST : 656- 661: fktas QQDcqE fcqfl UBP5_YEAST : 543- 548: ysdsm QQDcqE fcqfl UBPA_SCHPO : 231- 236: lcgys QQDghE ffvyl UBPB_YEAST : 509- 513: fpiev QGDe-E tdiqe UBPC_YEAST : 434- 439: fssnr QQDamE fltfl UBPE_YEAST : 433- 438: fntmm QQDahE flnfl UBPE_YEAST : 508- 512: fpiev QGDe-E tdiqk UBPF_YEAST : 207- 211: ggfyk QQDa-E elftq UBPF_YEAST : 207- 212: ggfyk QQDaeE lftql UBPI_YEAST : 701- 706: kipdd QQDtqE flmil UBPJ_YEAST : 459- 464: fsgym QQDsqE flafl UBPK_YEAST : 387- 392: nipdd QQDtqE flliv UBPX_CAEEL : 112- 117: fdnym QQDahE ffnyl UBPX_HUMAN : 866- 871: fagys QQDsqE lllfl UBP_MOUSE : 223- 228: fsgyq QQDsqE llafi E 5: 13.6558 18( 18) D-[ACGSTV]-x-E-x(4,5)-L Occurences: 18(18) TGT_RABIT : 353- 362: fplml DVyElctpeL qekmv TRE2_HUMAN : 306- 314: gfqqq DSqEllaf-L ldglh TRE2_HUMAN : 306- 315: gfqqq DSqEllaflL dglhe UBP1_YEAST : 246- 255: gydqe DAqEffqniL aeles UBP2_YEAST : 932- 941: mgrqq DVtEcignvL fqies UBP3_YEAST : 585- 593: wghqe DAeEflth-L ldqlh UBP3_YEAST : 585- 594: wghqe DAeEflthlL dqlhe UBP4_YEAST : 658- 666: tasqq DCqEfcqf-L ldglh UBP4_YEAST : 658- 667: tasqq DCqEfcqflL dglhe UBP5_YEAST : 545- 553: dsmqq DCqEfcqf-L ldglh UBP5_YEAST : 545- 554: dsmqq DCqEfcqflL dglhe UBPA_SCHPO : 233- 241: gysqq DGhEffvy-L ldqmh UBPA_SCHPO : 233- 242: gysqq DGhEffvylL dqmht UBPB_YEAST : 433- 441: ttmhq DAhEffnf-L lnels UBPB_YEAST : 433- 442: ttmhq DAhEffnflL nelse UBPC_YEAST : 436- 444: snrqq DAmEfltf-L ldlld UBPC_YEAST : 436- 445: snrqq DAmEfltflL dlldk UBPE_YEAST : 435- 443: tmmqq DAhEflnf-L lndfs UBPE_YEAST : 435- 444: tmmqq DAhEflnflL ndfse UBPF_YEAST : 209- 217: fykqq DAeElftq-L fhsms UBPI_YEAST : 703- 711: pddqq DTqEflmi-L ldrlh UBPI_YEAST : 703- 712: pddqq DTqEflmilL drlhd UBPJ_YEAST : 461- 469: gymqq DSqEflaf-L ldslh UBPJ_YEAST : 461- 470: gymqq DSqEflaflL dslhe UBPK_YEAST : 389- 398: pddqq DTqEfllivL arihe UBPX_CAEEL : 114- 122: nymqq DAhEffny-L intis UBPX_HUMAN : 868- 876: gysqq DSqElllf-L mdglh UBP_MOUSE : 225- 234: gyqqq DSqEllafiL dglhe F 6: 12.5102 18( 18) G-H-Y Occurences: 18(18) TGT_RABIT : 433- 435: rssss GHY vswvk TRE2_HUMAN : 1010- 1012: gilsg GHY ityak UBP1_YEAST : 696- 698: gthny GHY iafrk UBP2_YEAST : 1200- 1202: geasy GHY wiyik UBP3_YEAST : 860- 862: vssdg GHY tadvy UBP4_YEAST : 879- 881: gtlyg GHY tayvk UBP5_YEAST : 760- 762: gslyg GHY tsyvy UBPA_SCHPO : 394- 396: gtldt GHY iayty UBPB_YEAST : 618- 620: ggpqh GHY vslck UBPC_YEAST : 758- 760: nsvhs GHY vvfir UBPE_YEAST : 617- 619: sgpqh GHY vcicr UBPF_YEAST : 446- 448: anses GHY qafir UBPI_YEAST : 1013- 1015: gtlis GHY tslvn UBPJ_YEAST : 1067- 1069: gglgg GHY tayvk UBPK_YEAST : 648- 650: gnlin GHY tsvvn UBPX_CAEEL : 339- 341: atpnr GHY itlvk UBPX_HUMAN : 1066- 1068: ggldg GHY tayck UBP_MOUSE : 711- 713: gamgv GHY tayak G 7: 12.5102 19( 18) Q-D-x(2)-E Occurences: 19(18) TGT_RABIT : 198- 202: gqylq QDanE cwiqm TRE2_HUMAN : 305- 309: dgfqq QDsqE llafl UBP1_YEAST : 528- 532: ekaaq QDssE denig UBP2_YEAST : 931- 935: emgrq QDvtE cignv UBP3_YEAST : 303- 307: kedak QDrnE kviqe UBP4_YEAST : 657- 661: ktasq QDcqE fcqfl UBP5_YEAST : 544- 548: sdsmq QDcqE fcqfl UBPA_SCHPO : 232- 236: cgysq QDghE ffvyl UBPB_YEAST : 432- 436: nttmh QDahE ffnfl UBPC_YEAST : 435- 439: ssnrq QDamE fltfl UBPC_YEAST : 504- 508: endep QDmlE rikay UBPE_YEAST : 434- 438: ntmmq QDahE flnfl UBPF_YEAST : 208- 212: gfykq QDaeE lftql UBPI_YEAST : 702- 706: ipddq QDtqE flmil UBPJ_YEAST : 460- 464: sgymq QDsqE flafl UBPK_YEAST : 388- 392: ipddq QDtqE flliv UBPX_CAEEL : 113- 117: dnymq QDahE ffnyl UBPX_HUMAN : 867- 871: agysq QDsqE lllfl UBP_MOUSE : 224- 228: sgyqq QDsqE llafi H 8: 12.0102 28( 18) L-x(3,4)-L-x(5)-R Occurences: 28(18) TGT_RABIT : 319- 329: skisr Lpay-LtiqmvR ffyke TRE2_HUMAN : 314- 324: ellaf Lldg-LhedlnR vhekp TRE2_HUMAN : 755- 765: ldlwr Lppf-LiihlkR fqfvn TRE2_HUMAN : 922- 932: gqice Lada-LsrghmR ggsqp UBP1_YEAST : 125- 135: assre Lmef-LdnnviR tyeei UBP1_YEAST : 206- 216: valrd Llsa-LnakyyR dkpyf UBP2_YEAST : 105- 116: qsrgi LkesmLsystfR ssirp UBP2_YEAST : 479- 490: penig LyfdaLtyianR kgayq UBP3_YEAST : 774- 784: tfidk Lpqv-LliqfkR fsfin UBP4_YEAST : 802- 812: ltitr Lprn-LivhlkR fdnll UBP5_YEAST : 686- 696: lkitr Lpkk-LiinlkR fdnqm UBPA_SCHPO : 160- 170: fmsvi Lqsi-LhnplvR nlffs UBPB_YEAST : 341- 351: esnss Lstp-LdkkdtR rssss UBPB_YEAST : 441- 451: effnf Llne-LseyieR enkki UBPB_YEAST : 555- 565: vglkq Lpdt-LtlhlkR fkyse UBPC_YEAST : 541- 551: pgfks Lpqt-LilnpiR irlqn UBPC_YEAST : 681- 691: sltsm Lsmg-LnpnlcR kalil UBPE_YEAST : 554- 564: vglkq Lphi-LslhlkR fkyse UBPF_YEAST : 306- 316: kkisr Lpkf-LtvqyvR ffwkr UBPI_YEAST : 319- 329: itape Lfsi-LsnrveR ekvll UBPI_YEAST : 957- 967: infvt Lpki-LvihlsR fyydl UBPJ_YEAST : 469- 479: eflaf Llds-LhedlnR iikke UBPK_YEAST : 592- 602: ldfiv Lppi-LvihlsR fyydl UBPX_CAEEL : 397- 407: efric Lysv-LsgkrlR c UBPX_HUMAN : 880- 890: flmdg Lhed-LnkadnR kryke UBPX_HUMAN : 1003- 1013: ieiwk Lppv-LlvhlkR fsydg UBP_MOUSE : 309- 319: dpfcy Ltlp-LplkkdR imevf UBP_MOUSE : 648- 658: fdlws Lpki-LvvhlkR fsynr I 9: 12.0102 24( 18) K-x(5)-L-x(3,4)-L Occurences: 24(18) TGT_RABIT : 283- 293: inqev KylftgLklr-L qeeit TRE2_HUMAN : 739- 750: myycs KckthcLatkkL dlwrl TRE2_HUMAN : 749- 759: clatk KldlwrLppf-L iihlk UBP1_YEAST : 488- 499: tymir KnnskvLfksrL nlapw UBP2_YEAST : 71- 81: tnlpl KtsdrlLddi-L cdtif UBP2_YEAST : 915- 925: ptrva KissdqLena-L emgrq UBP3_YEAST : 197- 208: klknl KenssnLiqlpL fintt UBP4_YEAST : 42- 52: fiitg KakdqdLssl-L dkcid UBP5_YEAST : 65- 76: tmqap KedanrLskgfL rlnet UBPA_SCHPO : 323- 334: hscgs KnaikqLvfdkL pptic UBPB_YEAST : 471- 482: epsks KnfisdLfqgtL tnqik UBPB_YEAST : 553- 563: rlvgl KqlpdtLtlh-L krfky UBPC_YEAST : 535- 545: vtank KpgfksLpqt-L ilnpi UBPE_YEAST : 552- 562: rmvgl KqlphiLslh-L krfky UBPE_YEAST : 576- 587: qksni KlfnkiLypltL dvsst UBPF_YEAST : 174- 184: enlqn KsfksvLpiv-L lntlr UBPF_YEAST : 174- 185: enlqn KsfksvLpivlL ntlrk UBPI_YEAST : 38- 49: yhedi KhyypqLklekL ldlle UBPJ_YEAST : 958- 968: ersna KertitLddc-L qlfsk UBPJ_YEAST : 1044- 1054: ryvvy KddprgLiyd-L yavdn UBPK_YEAST : 21- 32: yevdi KqfysqLrlknL rglld UBPX_CAEEL : 272- 282: krmri KkppqlLalh-L krfkf UBPX_CAEEL : 391- 401: qsapq KefricLysv-L sgkrl UBPX_HUMAN : 997- 1007: rdslk KieiwkLppv-L lvhlk UBPX_HUMAN : 997- 1008: rdslk KieiwkLppvlL vhlkr UBP_MOUSE : 642- 652: qqatk KfdlwsLpki-L vvhlk J 10: 12.0102 46( 18) L-x(3)-L-x(2,3)-L Occurences: 46(18) TGT_RABIT : 103- 110: asame LpcgLtn-L gntcy TGT_RABIT : 285- 293: qevky LftgLklrL qeeit TRE2_HUMAN : 310- 318: qdsqe LlafLldgL hedln TRE2_HUMAN : 311- 318: dsqel LaflLdg-L hedln TRE2_HUMAN : 314- 322: ellaf LldgLhedL nrvhe TRE2_HUMAN : 430- 437: ekytg LkkqLrd-L cglns TRE2_HUMAN : 755- 763: ldlwr LppfLiihL krfqf UBP1_YEAST : 203- 210: tfsva LrdlLsa-L nakyy UBP2_YEAST : 557- 564: nhltn LknaLrl-L akytk UBP3_YEAST : 590- 597: daeef LthlLdq-L heeli UBP3_YEAST : 593- 601: eflth LldqLheeL isaid UBP4_YEAST : 666- 674: efcqf LldgLhedL nqcgs UBP4_YEAST : 802- 810: ltitr LprnLivhL krfdn UBP5_YEAST : 93- 100: ivytl LedtLpr-L kefss UBP5_YEAST : 440- 448: nnsqv LdldLivgL enign UBP5_YEAST : 553- 561: efcqf LldgLhedL nqngs UBP5_YEAST : 686- 694: lkitr LpkkLiinL krfdn UBPA_SCHPO : 160- 168: fmsvi LqsiLhnpL vrnlf UBPA_SCHPO : 164- 172: ilqsi LhnpLvrnL ffsgf UBPA_SCHPO : 218- 226: tavln LmwkLsksL cgysq UBPB_YEAST : 555- 563: vglkq LpdtLtlhL krfky UBPC_YEAST : 219- 227: csscd LtqnLwlcL hcgni UBPC_YEAST : 259- 266: nnnhp LaikLgs-L sssty UBPC_YEAST : 441- 448: damef LtflLdl-L dkkff UBPC_YEAST : 677- 685: vdevs LtsmLsmgL npnlc UBPC_YEAST : 681- 689: sltsm LsmgLnpnL crkal UBPE_YEAST : 554- 562: vglkq LphiLslhL krfky UBPF_YEAST : 120- 127: gntcy LnatLqa-L yrvnd UBPF_YEAST : 180- 188: sfksv LpivLlntL rkcyp UBPI_YEAST : 46- 53: ypqlk LeklLdl-L ehtey UBPI_YEAST : 660- 667: hyspk LsnsLsm-L fnkmy UBPI_YEAST : 708- 715: dtqef LmilLdr-L hdels UBPI_YEAST : 711- 719: eflmi LldrLhdeL sdqqh UBPI_YEAST : 957- 965: infvt LpkiLvihL srfyy UBPJ_YEAST : 31- 39: tpcdr LgvdLmnvL ddkde UBPJ_YEAST : 466- 473: dsqef LaflLds-L hedln UBPJ_YEAST : 469- 477: eflaf LldsLhedL nriik UBPK_YEAST : 592- 600: ldfiv LppiLvihL srfyy UBPX_CAEEL : 70- 77: askdn LvtcLad-L fhsia UBPX_HUMAN : 13- 20: pkely LsssLkd-L nkkte UBPX_HUMAN : 872- 880: qdsqe LllfLmdgL hedln UBPX_HUMAN : 876- 884: elllf LmdgLhedL nkadn UBPX_HUMAN : 1003- 1011: ieiwk LppvLlvhL krfsy UBP_MOUSE : 230- 237: dsqel LafiLdg-L hedln UBP_MOUSE : 350- 357: gaisd LceaLsk-L sgiaa UBP_MOUSE : 648- 656: fdlws LpkiLvvhL krfsy K 11: 11.5102 46( 18) L-x(3,4)-L-x(0,1)-R Occurences: 46(18) TGT_RABIT : 129- 135: rsvpe Lkda-LkR yagal TRE2_HUMAN : 318- 324: flldg Lhed-LnR vhekp TRE2_HUMAN : 363- 369: siivd LfhgqL-R sqvkc TRE2_HUMAN : 430- 435: ekytg Lkkq-L-R dlcgl TRE2_HUMAN : 716- 721: aepin Ldsc-L-R aftse TRE2_HUMAN : 759- 765: rlppf Liih-LkR fqfvn TRE2_HUMAN : 922- 928: gqice Lada-LsR ghmrg UBP1_YEAST : 77- 83: rnnns Lsrw-LpR skfth UBP1_YEAST : 89- 96: skfth LdeeiLkR ggfia UBP1_YEAST : 679- 684: vpatp Ltys-L-R svivh UBP2_YEAST : 557- 562: nhltn Lkna-L-R llaky UBP3_YEAST : 425- 431: kgiep LgsiaL-R mcfdp UBP4_YEAST : 797- 804: pstkq LtitrLpR nlivh UBP4_YEAST : 806- 812: rlprn Livh-LkR fdnll UBP5_YEAST : 71- 77: edanr LskgfL-R lneta UBP5_YEAST : 92- 99: mivyt LledtLpR lkefs UBP5_YEAST : 93- 99: ivytl Ledt-LpR lkefs UBP5_YEAST : 690- 696: rlpkk Liin-LkR fdnqm UBPA_SCHPO : 164- 170: ilqsi Lhnp-LvR nlffs UBPA_SCHPO : 300- 306: inept Lqgc-LeR fvske UBPB_YEAST : 389- 394: sdkat Lyss-L-R difec UBPB_YEAST : 559- 565: qlpdt Ltlh-LkR fkyse UBPC_YEAST : 685- 691: mlsmg Lnpn-LcR kalil UBPE_YEAST : 558- 564: qlphi Lslh-LkR fkyse UBPE_YEAST : 703- 709: kcddw LrdrkL-R aaani UBPF_YEAST : 184- 189: vlpiv Llnt-L-R kcypq UBPI_YEAST : 333- 338: erekv Llid-L-R ipqrs UBPI_YEAST : 507- 512: wkppd Lpir-L-R krppp UBPI_YEAST : 606- 612: nvyvs LsitgL-R nlgnt UBPI_YEAST : 708- 714: dtqef Lmil-LdR lhdel UBPI_YEAST : 961- 967: tlpki Lvih-LsR fyydl UBPJ_YEAST : 473- 479: fllds Lhed-LnR iikke UBPJ_YEAST : 947- 954: lpnke LenakLeR snake UBPJ_YEAST : 1007- 1013: ntpdi Llih-LkR fesqr UBPK_YEAST : 27- 33: qfysq LrlknL-R glldh UBPK_YEAST : 42- 48: dhaah LfnvyL-R dlein UBPK_YEAST : 316- 323: siiqc LfgttLfR dlflt UBPK_YEAST : 394- 400: dtqef Lliv-LaR iheel UBPK_YEAST : 596- 602: vlppi Lvih-LsR fyydl UBPX_CAEEL : 277- 284: kkppq LlalhLkR fkfve UBPX_CAEEL : 278- 284: kppql Lalh-LkR fkfve UBPX_CAEEL : 401- 407: clysv LsgkrL-R c UBPX_HUMAN : 964- 969: tskct Lqdc-L-R lfske UBPX_HUMAN : 1007- 1013: klppv Llvh-LkR fsydg UBP_MOUSE : 237- 243: fildg Lhed-LnR vkkkp UBP_MOUSE : 652- 658: slpki Lvvh-LkR fsynr L 12: 11.5102 50( 18) S-x(1,2)-L-x(3,4)-L Occurences: 50(18) TGT_RABIT : 301- 309: eitkq SptLqrnaL yikss TGT_RABIT : 317- 323: ksski Sr-Lpay-L tiqmv TRE2_HUMAN : 307- 314: fqqqd SqeLlaf-L ldglh TRE2_HUMAN : 307- 315: fqqqd SqeLlaflL dglhe TRE2_HUMAN : 608- 614: vwiqv Sw-Larp-L ppqea UBP1_YEAST : 122- 129: qslas SreLmef-L dnnvi UBP1_YEAST : 200- 207: pditf SvaLrdl-L salna UBP1_YEAST : 278- 285: tpvak Se-LpddaL vgqln UBP1_YEAST : 352- 358: rysvf Sg-Lsln-L pneni UBP1_YEAST : 365- 372: nenig St-LklsqL lsdws UBP1_YEAST : 397- 403: ltaah Sh-Lfgq-L kefek UBP1_YEAST : 491- 499: irknn SkvLfksrL nlapw UBP2_YEAST : 73- 81: lplkt SdrLlddiL cdtif UBP2_YEAST : 415- 422: lqtsf St-LpwfhL lgesr UBP2_YEAST : 528- 535: kecni Se-LneatL lsiyk UBP2_YEAST : 634- 641: aiskr SldLfnf-L teecp UBP2_YEAST : 704- 711: siern St-LitnfL ltgti UBP2_YEAST : 918- 925: vakis SdqLena-L emgrq UBP3_YEAST : 200- 208: nlken SsnLiqlpL fintt UBP3_YEAST : 201- 208: lkens Sn-LiqlpL fintt UBP3_YEAST : 472- 479: nicfm SsvLqvl-L yckpf UBP3_YEAST : 473- 479: icfms Sv-Lqvl-L yckpf UBP3_YEAST : 504- 512: rvgts SckLldacL tmykq UBP4_YEAST : 18- 26: cirhr SkyLtiaqL taiae UBP4_YEAST : 287- 293: nvkqq Sv-Lldi-L vnhsf UBP4_YEAST : 350- 357: ingnt Sg-LslqhL pkmsp UBP5_YEAST : 437- 444: tilnn SqvLdld-L ivgle UBPA_SCHPO : 157- 164: atcfm SviLqsi-L hnplv UBPA_SCHPO : 162- 168: svilq Si-Lhnp-L vrnlf UBPB_YEAST : 52- 60: ssdnp SssLfvsnL dtket UBPB_YEAST : 53- 60: sdnps Ss-LfvsnL dtket UBPB_YEAST : 162- 169: clynl Ss-LreniL qfpkk UBPB_YEAST : 339- 345: kgesn Ss-Lstp-L dkkdt UBPB_YEAST : 475- 482: sknfi Sd-LfqgtL tnqik UBPC_YEAST : 216- 223: lnqcs ScdLtqn-L wlclh UBPC_YEAST : 563- 571: ipvkt SneLslpgL idrdd UBPC_YEAST : 679- 685: evslt Sm-Lsmg-L npnlc UBPC_YEAST : 682- 689: ltsml SmgLnpn-L crkal UBPE_YEAST : 281- 288: tvvma SdtLtek-L hegck UBPF_YEAST : 178- 184: nksfk Sv-Lpiv-L lntlr UBPF_YEAST : 178- 185: nksfk Sv-LpivlL ntlrk UBPF_YEAST : 304- 310: vekki Sr-Lpkf-L tvqyv UBPI_YEAST : 657- 664: ngshy SpkLsns-L smlfn UBPJ_YEAST : 418- 424: varaf Sd-Lvqk-L fqnrm UBPJ_YEAST : 599- 606: yvgkm Sg-LdpntL fgcei UBPK_YEAST : 25- 32: ikqfy Sq-LrlknL rglld UBPK_YEAST : 288- 295: pvied SndLlse-L sitgl UBPK_YEAST : 293- 300: sndll Se-LsitgL qnpcn UBPX_CAEEL : 399- 406: ricly Sv-LsgkrL rc UBPX_HUMAN : 869- 876: ysqqd SqeLllf-L mdglh UBP_MOUSE : 226- 234: yqqqd SqeLlafiL dglhe UBP_MOUSE : 348- 354: lmgai Sd-Lcea-L sklsg M 13: 11.5102 50( 18) S-x(1,2)-S-x(0,1)-K Occurences: 50(18) TGT_RABIT : 368- 372: qekmv SfrS-K fkdie TRE2_HUMAN : 851- 855: lsani Ss-SpK gspss TRE2_HUMAN : 859- 863: pkgsp Ss-SrK sgtsc TRE2_HUMAN : 867- 872: rksgt ScpSsK nsspn TRE2_HUMAN : 902- 905: sknkp Ss-S-K knlda TRE2_HUMAN : 902- 906: sknkp Ss-SkK nldas UBP1_YEAST : 183- 186: klnrk Ss-S-K edeek UBP1_YEAST : 374- 378: lsqll SdwS-K peiie UBP1_YEAST : 456- 459: mvrkc Sk-S-K qilis UBP2_YEAST : 849- 852: qtgvl Sd-S-K kettd UBP2_YEAST : 849- 853: qtgvl Sd-SkK ettdd UBP3_YEAST : 545- 549: sdakk SskS-K sfqhc UBP3_YEAST : 546- 549: dakks Sk-S-K sfqhc UBP3_YEAST : 673- 677: gwhev SgsS-K rgkkt UBP3_YEAST : 673- 677: gwhev Sg-SsK rgkkt UBP3_YEAST : 695- 699: veivp SpiS-K lfggq UBP4_YEAST : 402- 406: hvlkr Ss-SfK klfsn UBP5_YEAST : 488- 492: infds SrgS-K gllak UBPA_SCHPO : 266- 270: ihrif Sg-SlK nvvtc UBPA_SCHPO : 319- 323: qysch ScgS-K naikq UBPB_YEAST : 9- 13: rwlti Sk-SgK kkkav UBPB_YEAST : 246- 250: skffk Sf-SaK hvqdn UBPB_YEAST : 465- 469: dinsd SepS-K sknfi UBPB_YEAST : 468- 471: sdsep Sk-S-K nfisd UBPB_YEAST : 593- 597: lnvcs SinS-K vcqky UBPC_YEAST : 338- 341: efekl Sa-S-K nygcg UBPE_YEAST : 46- 50: psiak Sp-SaK sstss UBPE_YEAST : 307- 310: lkqsd Sl-S-K asttd UBPF_YEAST : 257- 260: vkene Sd-S-K lqchi UBPI_YEAST : 486- 490: pdsqd Sf-SaK esstk UBPI_YEAST : 544- 549: vhsqv SsiSrK ppipa UBPI_YEAST : 545- 549: hsqvs Si-SrK ppipa UBPI_YEAST : 654- 659: irsng ShySpK lsnsl UBPJ_YEAST : 757- 762: tdkdk SffSiK ilsve UBPJ_YEAST : 1019- 1023: fesqr Sf-SdK idatv UBPK_YEAST : 254- 258: sqdss SslS-K vekpk UBPK_YEAST : 255- 258: qdsss Sl-S-K vekpk UBPK_YEAST : 489- 493: klsly SftS-K srkik UBPK_YEAST : 492- 496: lysft Sk-SrK ikled UBPK_YEAST : 528- 531: critd Sk-S-K keeit UBPK_YEAST : 528- 532: critd Sk-SkK eeits UBPK_YEAST : 551- 554: gfhsr Sr-S-K sphhh UBPK_YEAST : 566- 571: hhhhs SddStK nakkr UBPX_CAEEL : 63- 67: qtlkk SgaS-K dnlvt UBPX_CAEEL : 80- 85: adlfh SiaSqK rrvgt UBPX_CAEEL : 399- 404: ricly SvlSgK rlrc UBPX_HUMAN : 14- 18: kelyl Ss-SlK dlnkk UBPX_HUMAN : 106- 110: eaerl Se-SlK lryee UBPX_HUMAN : 342- 346: pslee SipS-K paaqt UBPX_HUMAN : 434- 439: nheqq SpqSgK vipdr UBPX_HUMAN : 597- 601: svtgd Sg-SgK pfkik UBPX_HUMAN : 958- 961: slpla St-S-K ctlqd UBPX_HUMAN : 1092- 1097: evsdi SvsSvK ssaay UBP_MOUSE : 60- 64: twprq SlqS-K sstap N 14: 11.5102 44( 18) L-x(3)-L-x(0,2)-K Occurences: 44(18) TGT_RABIT : 129- 134: rsvpe LkdaL--K ryaga TGT_RABIT : 285- 290: qevky LftgL--K lrlqe TRE2_HUMAN : 759- 764: rlppf LiihL--K rfqfv UBP1_YEAST : 206- 213: valrd LlsaLnaK yyrdk UBP1_YEAST : 399- 404: aahsh LfgqL--K efekk UBP2_YEAST : 691- 697: dqfli LraaLt-K isier UBP2_YEAST : 1259- 1264: gdiep LkriL--K UBP3_YEAST : 475- 482: fmssv LqvlLycK pfidv UBP4_YEAST : 48- 54: akdqd LsslLd-K cidil UBP4_YEAST : 145- 151: niynt LletLl-K denia UBP4_YEAST : 146- 151: iyntl LetlL--K denia UBP4_YEAST : 806- 811: rlprn LivhL--K rfdnl UBP5_YEAST : 690- 695: rlpkk LiinL--K rfdnq UBPA_SCHPO : 218- 224: tavln LmwkLs-K slcgy UBPB_YEAST : 341- 347: esnss LstpLd-K kdtrr UBPB_YEAST : 341- 348: esnss LstpLdkK dtrrs UBPB_YEAST : 559- 564: qlpdt LtlhL--K rfkys UBPC_YEAST : 444- 450: efltf LldlLd-K kffss UBPC_YEAST : 444- 451: efltf LldlLdkK ffsss UBPC_YEAST : 685- 692: mlsmg LnpnLcrK aliln UBPE_YEAST : 391- 396: teeat LyngL--K difes UBPE_YEAST : 558- 563: qlphi LslhL--K rfkys UBPF_YEAST : 184- 190: vlpiv LlntLr-K cypqf UBPF_YEAST : 276- 283: fmrng LlegLneK iekrs UBPI_YEAST : 376- 381: ykddi LehlL--K enenf UBPI_YEAST : 507- 513: wkppd LpirLr-K rpppp UBPI_YEAST : 691- 696: kvinq LrpdL--K ipddq UBPI_YEAST : 986- 991: typli LniiL--K nndtm UBPJ_YEAST : 35- 42: rlgvd LmnvLddK deikq UBPJ_YEAST : 248- 255: msaln LvrdLveK smnlf UBPJ_YEAST : 578- 584: sppll LeveLs-K sstym UBPJ_YEAST : 1007- 1012: ntpdi LlihL--K rfesq UBPK_YEAST : 456- 461: iyrgq LeniL--K cqrcg UBPK_YEAST : 621- 626: typli LniiL--K ngkvi UBPX_CAEEL : 278- 283: kppql LalhL--K rfkfv UBPX_CAEEL : 397- 404: efric LysvLsgK rlrc UBPX_HUMAN : 13- 18: pkely LsssL--K dlnkk UBPX_HUMAN : 105- 110: eeaer LsesL--K lryee UBPX_HUMAN : 154- 161: lakgs LenvLdsK dktqk UBPX_HUMAN : 277- 283: ttlrs LkdaLf-K weskt UBPX_HUMAN : 880- 886: flmdg LhedLn-K adnrk UBPX_HUMAN : 1007- 1012: klppv LlvhL--K rfsyd UBP_MOUSE : 309- 316: dpfcy LtlpLplK kdrim UBP_MOUSE : 311- 316: fcylt LplpL--K kdrim UBP_MOUSE : 311- 317: fcylt LplpLk-K drime UBP_MOUSE : 350- 356: gaisd LceaLs-K lsgia UBP_MOUSE : 652- 657: slpki LvvhL--K rfsyn O 15: 11.5102 35( 18) L-x(3)-L-x(3,5)-R Occurences: 35(18) TGT_RABIT : 319- 329: skisr LpayLtiqmvR ffyke TGT_RABIT : 419- 428: cgyyd LqavLthqg-R ssssg TRE2_HUMAN : 314- 324: ellaf LldgLhedlnR vhekp TRE2_HUMAN : 755- 765: ldlwr LppfLiihlkR fqfvn TRE2_HUMAN : 922- 932: gqice LadaLsrghmR ggsqp UBP1_YEAST : 12- 20: skins LlqfLfgs--R qdflr UBP1_YEAST : 125- 135: assre LmefLdnnviR tyeei UBP1_YEAST : 206- 216: valrd LlsaLnakyyR dkpyf UBP2_YEAST : 921- 929: issdq LenaLemg--R qqdvt UBP3_YEAST : 774- 784: tfidk LpqvLliqfkR fsfin UBP4_YEAST : 802- 812: ltitr LprnLivhlkR fdnll UBP5_YEAST : 686- 696: lkitr LpkkLiinlkR fdnqm UBPA_SCHPO : 160- 170: fmsvi LqsiLhnplvR nlffs UBPB_YEAST : 341- 351: esnss LstpLdkkdtR rssss UBPB_YEAST : 441- 451: effnf LlneLseyieR enkki UBPB_YEAST : 555- 565: vglkq LpdtLtlhlkR fkyse UBPC_YEAST : 541- 551: pgfks LpqtLilnpiR irlqn UBPC_YEAST : 681- 691: sltsm LsmgLnpnlcR kalil UBPE_YEAST : 554- 564: vglkq LphiLslhlkR fkyse UBPF_YEAST : 120- 129: gntcy LnatLqaly-R vndlr UBPF_YEAST : 180- 189: sfksv LpivLlntl-R kcypq UBPF_YEAST : 306- 316: kkisr LpkfLtvqyvR ffwkr UBPI_YEAST : 319- 329: itape LfsiLsnrveR ekvll UBPI_YEAST : 333- 342: erekv LlidLripq-R sainh UBPI_YEAST : 957- 967: infvt LpkiLvihlsR fyydl UBPJ_YEAST : 420- 428: rafsd LvqkLfqn--R msimq UBPJ_YEAST : 469- 479: eflaf LldsLhedlnR iikke UBPK_YEAST : 456- 464: iyrgq LeniLkcq--R cgnss UBPK_YEAST : 592- 602: ldfiv LppiLvihlsR fyydl UBPX_CAEEL : 397- 405: efric LysvLsgk--R lrc UBPX_CAEEL : 397- 407: efric LysvLsgkrlR c UBPX_HUMAN : 880- 890: flmdg LhedLnkadnR kryke UBPX_HUMAN : 1003- 1013: ieiwk LppvLlvhlkR fsydg UBP_MOUSE : 309- 319: dpfcy LtlpLplkkdR imevf UBP_MOUSE : 311- 319: fcylt LplpLkkd--R imevf UBP_MOUSE : 648- 658: fdlws LpkiLvvhlkR fsynr P 16: 11.5102 33( 18) F-x(3,4)-L-x(3,4)-L Occurences: 33(18) TGT_RABIT : 348- 357: lkdvk Fplm-LdvyeL ctpel TRE2_HUMAN : 313- 322: qella FlldgLhed-L nrvhe UBP1_YEAST : 199- 207: epdit Fsva-Lrdl-L salna UBP1_YEAST : 318- 327: ksiqn FtpfkLmtp-L dgita UBP2_YEAST : 383- 391: clqli Fwgq-Lsts-L lapns UBP2_YEAST : 383- 392: clqli Fwgq-LstslL apnsp UBP2_YEAST : 747- 757: llqyy FsiapLrryvL eyqkt UBP3_YEAST : 470- 479: ranic FmssvLqvl-L yckpf UBP3_YEAST : 589- 597: edaee Flth-Lldq-L heeli UBP3_YEAST : 770- 778: akkqt Fidk-Lpqv-L liqfk UBP3_YEAST : 770- 779: akkqt Fidk-LpqvlL iqfkr UBP4_YEAST : 662- 670: qdcqe Fcqf-Lldg-L hedln UBP4_YEAST : 665- 674: qefcq FlldgLhed-L nqcgs UBP5_YEAST : 549- 557: qdcqe Fcqf-Lldg-L hedln UBP5_YEAST : 552- 561: qefcq FlldgLhed-L nqngs UBPA_SCHPO : 155- 164: lgatc FmsviLqsi-L hnplv UBPB_YEAST : 437- 445: qdahe Ffnf-Llne-L seyie UBPB_YEAST : 473- 482: skskn Fisd-LfqgtL tnqik UBPC_YEAST : 440- 448: qdame Fltf-Lldl-L dkkff UBPE_YEAST : 472- 481: nsndn Fitd-LfkgtL tnrik UBPE_YEAST : 578- 587: snikl Fnki-LypltL dvsst UBPF_YEAST : 176- 184: lqnks Fksv-Lpiv-L lntlr UBPF_YEAST : 176- 185: lqnks Fksv-LpivlL ntlrk UBPF_YEAST : 271- 280: sgttn FmrngLleg-L nekie UBPI_YEAST : 707- 715: qdtqe Flmi-Lldr-L hdels UBPJ_YEAST : 465- 473: qdsqe Flaf-Llds-L hedln UBPJ_YEAST : 468- 477: qefla FlldsLhed-L nriik UBPJ_YEAST : 678- 687: lfgvp Ffit-LkedeL nnpga UBPK_YEAST : 23- 32: vdikq Fysq-LrlknL rglld UBPK_YEAST : 317- 325: iiqcl Fgtt-Lfrd-L fltkk UBPK_YEAST : 475- 485: ysyst FyvlsLaipkL slysf UBPX_CAEEL : 393- 401: apqke Fric-Lysv-L sgkrl UBPX_HUMAN : 875- 884: qelll FlmdgLhed-L nkadn UBP_MOUSE : 232- 241: qella FildgLhed-L nrvkk UBP_MOUSE : 306- 315: vtfdp FcyltLplp-L kkdri UBP_MOUSE : 643- 652: qatkk FdlwsLpki-L vvhlk Q 17: 11.5102 37( 18) F-x(3,4)-L-x(2,3)-L Occurences: 37(18) TGT_RABIT : 29- 36: eppmv Fkaq-Lfa-L tgvqp TRE2_HUMAN : 313- 322: qella FlldgLhedL nrvhe UBP1_YEAST : 111- 119: dgntc FmnsvLqs-L assre UBP1_YEAST : 199- 206: epdit Fsva-Lrd-L lsaln UBP1_YEAST : 199- 207: epdit Fsva-LrdlL salna UBP1_YEAST : 250- 258: edaqe FfqniLae-L esnvk UBP1_YEAST : 251- 258: daqef Fqni-Lae-L esnvk UBP1_YEAST : 318- 327: ksiqn FtpfkLmtpL dgita UBP2_YEAST : 383- 391: clqli Fwgq-LstsL lapns UBP2_YEAST : 795- 802: ersiq Fiyq-Lrn-L fyamv UBP3_YEAST : 188- 196: ydlyk FdvtkLkn-L kenss UBP3_YEAST : 470- 478: ranic FmssvLqv-L lyckp UBP3_YEAST : 470- 479: ranic FmssvLqvlL yckpf UBP3_YEAST : 589- 597: edaee FlthlLdq-L heeli UBP3_YEAST : 589- 597: edaee Flth-LldqL heeli UBP3_YEAST : 770- 778: akkqt Fidk-LpqvL liqfk UBP4_YEAST : 560- 567: nydld Favg-Len-L gnscy UBP4_YEAST : 662- 670: qdcqe FcqflLdg-L hedln UBP4_YEAST : 662- 670: qdcqe Fcqf-LldgL hedln UBP4_YEAST : 665- 674: qefcq FlldgLhedL nqcgs UBP5_YEAST : 549- 557: qdcqe FcqflLdg-L hedln UBP5_YEAST : 549- 557: qdcqe Fcqf-LldgL hedln UBP5_YEAST : 552- 561: qefcq FlldgLhedL nqngs UBPA_SCHPO : 155- 164: lgatc FmsviLqsiL hnplv UBPB_YEAST : 437- 445: qdahe FfnflLne-L seyie UBPB_YEAST : 437- 445: qdahe Ffnf-LlneL seyie UBPB_YEAST : 438- 445: dahef Fnfl-Lne-L seyie UBPC_YEAST : 440- 447: qdame Fltf-Lld-L ldkkf UBPC_YEAST : 440- 448: qdame FltflLdl-L dkkff UBPC_YEAST : 440- 448: qdame Fltf-LldlL dkkff UBPE_YEAST : 578- 585: snikl Fnki-Lyp-L tldvs UBPF_YEAST : 176- 184: lqnks Fksv-LpivL lntlr UBPF_YEAST : 271- 280: sgttn FmrngLlegL nekie UBPI_YEAST : 301- 308: vendg Fiqs-Ldi-L qkqsi UBPI_YEAST : 707- 715: qdtqe FlmilLdr-L hdels UBPI_YEAST : 707- 715: qdtqe Flmi-LldrL hdels UBPJ_YEAST : 465- 473: qdsqe FlaflLds-L hedln UBPJ_YEAST : 465- 473: qdsqe Flaf-LldsL hedln UBPJ_YEAST : 468- 477: qefla FlldsLhedL nriik UBPK_YEAST : 43- 50: haahl Fnvy-Lrd-L einqe UBPK_YEAST : 317- 325: iiqcl Fgtt-LfrdL fltkk UBPX_CAEEL : 393- 401: apqke Fric-LysvL sgkrl UBPX_HUMAN : 875- 884: qelll FlmdgLhedL nkadn UBP_MOUSE : 144- 152: lgntc FmnsaLqc-L sntap UBP_MOUSE : 232- 241: qella FildgLhedL nrvkk UBP_MOUSE : 306- 315: vtfdp FcyltLplpL kkdri UBP_MOUSE : 643- 652: qatkk FdlwsLpkiL vvhlk R 18: 11.5102 87( 18) S-x(3,4)-S-x(1,2)-S Occurences: 87(18) TGT_RABIT : 162- 169: rdlfd SmdktSs-S ippii TRE2_HUMAN : 87- 95: picsa SppwaSrfS tpcpg TRE2_HUMAN : 482- 488: eipvp Sspi-Sa-S sptqi TRE2_HUMAN : 482- 489: eipvp Sspi-SasS ptqid TRE2_HUMAN : 840- 847: edmll SkspsSl-S aniss TRE2_HUMAN : 840- 847: edmll Sksp-SslS aniss TRE2_HUMAN : 847- 853: spssl Sani-Ss-S pkgsp TRE2_HUMAN : 852- 859: sanis SspkgSp-S ssrks TRE2_HUMAN : 852- 860: sanis SspkgSpsS srksg TRE2_HUMAN : 853- 859: aniss Spkg-Sp-S ssrks TRE2_HUMAN : 853- 860: aniss Spkg-SpsS srksg TRE2_HUMAN : 857- 864: sspkg Spss-SrkS gtscp TRE2_HUMAN : 859- 867: pkgsp SssrkSgtS cpssk TRE2_HUMAN : 860- 867: kgsps Ssrk-SgtS cpssk TRE2_HUMAN : 867- 874: rksgt Scps-SknS spnss TRE2_HUMAN : 870- 878: gtscp SsknsSpnS sprtl TRE2_HUMAN : 871- 878: tscps Skns-SpnS sprtl TRE2_HUMAN : 897- 904: lpqig SknkpSs-S kknld TRE2_HUMAN : 1073- 1080: madts StdedSe-S dyeky UBP1_YEAST : 114- 121: tcfmn Svlq-SlaS srelm UBP1_YEAST : 370- 377: stlkl Sqll-SdwS kpeii UBP2_YEAST : 137- 143: vfqtk Seyd-Si-S cpkyn UBP2_YEAST : 408- 415: svkgm SslqtSf-S tlpwf UBP2_YEAST : 409- 415: vkgms Slqt-Sf-S tlpwf UBP3_YEAST : 167- 173: sngng Ssat-Sp-S yssyn UBP3_YEAST : 168- 175: ngngs SatspSy-S synss UBP3_YEAST : 168- 176: ngngs SatspSysS ynsss UBP3_YEAST : 171- 179: gssat SpsysSynS ssqyd UBP3_YEAST : 175- 181: tspsy Ssyn-Ss-S qydly UBP3_YEAST : 335- 341: veent Skts-Sp-S psppa UBP3_YEAST : 364- 371: ksrqa SnktvSg-S mvtkt UBP3_YEAST : 540- 548: ektte SdakkSskS ksfqh UBP4_YEAST : 189- 197: gsyit SnqlnSliS ssans UBP4_YEAST : 194- 202: snqln SlissSanS assqm UBP4_YEAST : 197- 204: lnsli SssanSa-S sqmei UBP4_YEAST : 197- 205: lnsli SssanSasS qmeil UBP4_YEAST : 198- 204: nslis Ssan-Sa-S sqmei UBP4_YEAST : 198- 205: nslis Ssan-SasS qmeil UBP4_YEAST : 237- 243: clepi Sfkm-Sy-S dhdle UBP4_YEAST : 251- 258: dlekk Slit-SpnS eikmf UBP4_YEAST : 422- 428: pknsn Snly-Si-S slsis UBP4_YEAST : 422- 429: pknsn Snly-SisS lsiss UBP4_YEAST : 426- 433: nsnly SisslSi-S sspsp UBP4_YEAST : 426- 434: nsnly SisslSisS spspl UBP4_YEAST : 428- 435: nlysi SslsiSs-S psplp UBP4_YEAST : 429- 435: lysis Slsi-Ss-S psplp UBP4_YEAST : 429- 437: lysis SlsisSspS plplh UBP4_YEAST : 431- 437: sissl Siss-Sp-S plplh UBP4_YEAST : 520- 528: nlnmn SnghsSatS tiqps UBP4_YEAST : 528- 536: hssat StiqpSclS lsnnd UBP4_YEAST : 630- 636: eqvdg Skki-Si-S pikfk UBP5_YEAST : 205- 212: qiesv Slit-SphS ditff UBPA_SCHPO : 48- 56: rinkr SirclSchS vgclw UBPB_YEAST : 47- 54: lcyse SsdnpSs-S lfvsn UBPB_YEAST : 48- 54: cyses Sdnp-Ss-S lfvsn UBPB_YEAST : 241- 248: psekk SkffkSf-S akhvq UBPB_YEAST : 322- 328: nyenp Srgs-Sn-S nnldl UBPB_YEAST : 353- 360: kdtrr Ssss-SqiS pehrk UBPB_YEAST : 459- 465: kkiaa Sdin-Sd-S epsks UBPB_YEAST : 463- 470: asdin SdsepSk-S knfis UBPC_YEAST : 14- 21: fiqke SpksfSh-S emaea UBPC_YEAST : 153- 161: prtvl SkstdSdiS stale UBPE_YEAST : 42- 48: gsgdp Siak-Sp-S aksst UBPE_YEAST : 46- 54: psiak SpsakSstS sipsn UBPE_YEAST : 48- 54: iaksp Saks-St-S sipsn UBPE_YEAST : 48- 55: iaksp Saks-StsS ipsnl UBPE_YEAST : 51- 58: spsak Ssts-SipS nlash UBPE_YEAST : 62- 70: psnla SherrSkfS sqtdn UBPE_YEAST : 192- 199: vftne Sfet-StnS gnsnt UBPE_YEAST : 223- 230: hhlqq SdqdnSs-S stqek UBPE_YEAST : 223- 231: hhlqq SdqdnSssS tqekq UBPE_YEAST : 305- 312: pllkq Sdsl-SkaS ttdcq UBPF_YEAST : 143- 149: lnynp Sqgv-Sn-S gaqde UBPI_YEAST : 162- 169: paddl SgqvaSl-S ldtaa UBPI_YEAST : 541- 547: kimvh Sqvs-Si-S rkppi UBPI_YEAST : 657- 663: ngshy Spkl-Sn-S lsmlf UBPI_YEAST : 846- 852: cgpta Svst-Sv-S alene UBPI_YEAST : 918- 924: rmlgg Sgkr-Ss-S stpfs UBPI_YEAST : 918- 925: rmlgg SgkrsSs-S tpfst UBPI_YEAST : 918- 925: rmlgg Sgkr-SssS tpfst UBPJ_YEAST : 65- 72: tesda Savs-SfaS aneli UBPJ_YEAST : 237- 244: hgqdd SimylSm-S alnlv UBPJ_YEAST : 1220- 1226: vyknn Sglg-Ss-S tseis UBPJ_YEAST : 1220- 1228: vyknn SglgsSstS eiseg UBPJ_YEAST : 1224- 1231: nsglg Ssst-SeiS egcpe UBPK_YEAST : 204- 212: vayyt SkealSkpS ylkls UBPK_YEAST : 248- 254: sqird Ssqd-Ss-S slskv UBPK_YEAST : 248- 255: sqird SsqdsSs-S lskve UBPK_YEAST : 248- 255: sqird Ssqd-SssS lskve UBPK_YEAST : 249- 255: qirds Sqds-Ss-S lskve UBPK_YEAST : 249- 257: qirds SqdssSslS kvekp UBPK_YEAST : 288- 296: pvied SndllSelS itglq UBPK_YEAST : 549- 555: ifgfh Srsr-Sk-S phhhh UBPX_CAEEL : 366- 374: klevs SmeefSgmS tdani UBPX_HUMAN : 213- 220: qdyqd ScilhSl-S vpeea UBPX_HUMAN : 338- 345: dftyp Slee-SipS kpaaq UBPX_HUMAN : 592- 599: dvpht SvtgdSg-S gkpfk UBPX_HUMAN : 711- 718: rdrep SklkrSy-S spdit UBPX_HUMAN : 711- 719: rdrep SklkrSysS pditq UBPX_HUMAN : 953- 960: afmyl SlplaSt-S kctlq UBP_MOUSE : 76- 82: rnftt Sskp-Sa-S pycsv UBP_MOUSE : 82- 88: skpsa Spyc-Sv-S aslia UBP_MOUSE : 101- 109: dstns SgmhsSgvS rggsg UBP_MOUSE : 109- 116: hssgv Srgg-SgfS async UBP_MOUSE : 421- 427: frekk Srps-Sa-S sgavl UBP_MOUSE : 421- 428: frekk Srps-SasS gavly UBP_MOUSE : 759- 766: rddec Ssts-SlgS fpgsd S 19: 11.5102 58( 18) K-x(0,1)-S-x(1,2)-S Occurences: 58(18) TGT_RABIT : 165- 169: fdsmd KtSs-S ippii TGT_RABIT : 312- 317: nalyi KsSkiS rlpay TRE2_HUMAN : 841- 844: dmlls K-Sp-S slsan TRE2_HUMAN : 841- 845: dmlls K-SpsS lsani TRE2_HUMAN : 855- 859: isssp KgSp-S ssrks TRE2_HUMAN : 855- 860: isssp KgSpsS srksg TRE2_HUMAN : 863- 867: psssr K-SgtS cpssk TRE2_HUMAN : 900- 904: igskn KpSs-S kknld UBP1_YEAST : 182- 185: kklnr K-Ss-S kedee UBP1_YEAST : 454- 458: anmvr KcSk-S kqili UBP2_YEAST : 106- 111: srgil KeSmlS ystfr UBP3_YEAST : 254- 257: ahhht K-Sh-S ipkhn UBP3_YEAST : 336- 341: eents KtSspS psppa UBP3_YEAST : 348- 351: sppaa K-Sw-S aiasd UBP3_YEAST : 397- 400: aatig K-Ss-S pllsk UBP3_YEAST : 543- 548: tesda KkSskS ksfqh UBP3_YEAST : 544- 548: esdak KsSk-S ksfqh UBP3_YEAST : 544- 548: esdak K-SskS ksfqh UBP3_YEAST : 547- 550: akkss K-Sk-S fqhca UBP3_YEAST : 715- 719: dipnn KeSq-S itldp UBP3_YEAST : 756- 759: ellpf K-Ss-S gndve UBP4_YEAST : 121- 124: kiklh K-St-S degng UBP4_YEAST : 239- 243: episf KmSy-S dhdle UBP4_YEAST : 359- 363: lqhlp KmSp-S irhsm UBP4_YEAST : 400- 404: ndhvl KrSs-S fkklf UBP4_YEAST : 418- 422: tspnp KnSn-S nlysi UBP4_YEAST : 632- 636: vdgsk KiSi-S pikfk UBP5_YEAST : 313- 316: glfnq K-Sl-S pnkdk UBPA_SCHPO : 221- 225: lnlmw KlSk-S lcgys UBPB_YEAST : 125- 129: pilam KvSd-S mpygd UBPB_YEAST : 173- 178: ilqfp KkSreS dhprk UBPB_YEAST : 174- 178: lqfpk K-SreS dhprk UBPB_YEAST : 245- 248: kskff K-Sf-S akhvq UBPC_YEAST : 12- 17: gkfiq KeSpkS fshse UBPC_YEAST : 16- 19: qkesp K-Sf-S hsema UBPC_YEAST : 154- 158: rtvls K-StdS disst UBPC_YEAST : 336- 340: gkefe KlSa-S knygc UBPE_YEAST : 45- 48: dpsia K-Sp-S aksst UBPE_YEAST : 50- 54: kspsa KsSt-S sipsn UBPE_YEAST : 50- 54: kspsa K-SstS sipsn UBPE_YEAST : 50- 55: kspsa KsStsS ipsnl UBPE_YEAST : 303- 307: grpll KqSd-S lskas UBPF_YEAST : 174- 178: enlqn K-SfkS vlpiv UBPI_YEAST : 101- 104: fqtrn K-Sy-S iytdl UBPI_YEAST : 272- 277: svthr KdSyhS vymvd UBPI_YEAST : 659- 663: shysp KlSn-S lsmlf UBPI_YEAST : 920- 924: lggsg KrSs-S stpfs UBPI_YEAST : 920- 925: lggsg KrSssS tpfst UBPI_YEAST : 1055- 1059: sdknl KiSs-S dvyvl UBPJ_YEAST : 488- 492: keyte KpSl-S pgddv UBPJ_YEAST : 756- 760: vtdkd K-SffS ikils UBPJ_YEAST : 898- 903: aldki KdSltS tpfai UBPK_YEAST : 484- 489: slaip KlSlyS ftsks UBPX_CAEEL : 61- 66: ykqtl KkSgaS kdnlv UBPX_CAEEL : 62- 66: kqtlk K-SgaS kdnlv UBPX_CAEEL : 346- 349: yitlv K-Sn-S fwlvf UBPX_HUMAN : 30- 35: evkpe KiStkS yvhsa UBPX_HUMAN : 388- 392: pvaas K-SdvS piiqp UBPX_HUMAN : 424- 427: eehri K-Se-S tnheq UBPX_HUMAN : 714- 718: epskl KrSy-S spdit UBPX_HUMAN : 714- 719: epskl KrSysS pditq UBP_MOUSE : 78- 82: fttss KpSa-S pycsv UBP_MOUSE : 419- 424: vyfre KkSrpS sassg UBP_MOUSE : 420- 424: yfrek K-SrpS sassg UBP_MOUSE : 775- 779: sdggv KlSs-S hqgmg T 20: 11.5102 37( 18) L-x(1,2)-K-x(2,3)-S Occurences: 37(18) TGT_RABIT : 362- 368: lctpe LqeKmv-S frskf TRE2_HUMAN : 838- 844: gkedm LlsKsp-S slsan TRE2_HUMAN : 838- 845: gkedm LlsKspsS lsani TRE2_HUMAN : 839- 844: kedml Ls-Ksp-S slsan TRE2_HUMAN : 839- 845: kedml Ls-KspsS lsani UBP1_YEAST : 179- 185: khkkk LnrKss-S kedee UBP1_YEAST : 226- 231: fktns Ll-Kam-S ksprk UBP2_YEAST : 563- 570: knalr LlaKytkS dklkf UBP2_YEAST : 564- 570: nalrl La-KytkS dklkf UBP3_YEAST : 753- 759: seyel LpfKss-S gndve UBP4_YEAST : 119- 124: fakik Lh-Kst-S degng UBP4_YEAST : 357- 363: lslqh Lp-KmspS irhsm UBP4_YEAST : 650- 655: gsvns Lf-Kta-S qqdcq UBP4_YEAST : 730- 736: qyasr LkcKvc-S htstt UBP5_YEAST : 246- 251: rqtri La-Kil-S qnsvi UBP5_YEAST : 672- 677: scpkc Lk-Kqp-S tkqlk UBPA_SCHPO : 218- 225: tavln LmwKlskS lcgys UBPB_YEAST : 122- 129: peapi LamKvsdS mpygd UBPB_YEAST : 331- 337: snsnn LdlKge-S nssls UBPC_YEAST : 152- 158: vprtv Ls-KstdS disst UBPC_YEAST : 259- 265: nnnhp LaiKlg-S lssst UBPC_YEAST : 447- 454: tflld LldKkffS ssssg UBPC_YEAST : 448- 454: flldl LdkKff-S ssssg UBPC_YEAST : 448- 454: flldl Ld-KkffS ssssg UBPC_YEAST : 448- 455: flldl LdkKffsS sssgi UBPE_YEAST : 32- 38: rkats Lk-KtkgS gdpsi UBPE_YEAST : 301- 307: ivgrp Ll-KqsdS lskas UBPF_YEAST : 64- 69: ikiyp Li-Kpg-S tvmll UBPF_YEAST : 171- 178: rcfen LqnKsfkS vlpiv UBPI_YEAST : 804- 810: rrsmk Ls-KlgrS tekrv UBPJ_YEAST : 324- 329: mfenr Ld-Kit-S npsdl UBPJ_YEAST : 894- 900: dkpea Ld-KikdS ltstp UBPK_YEAST : 223- 228: tgkda Lf-Ktl-S spata UBPK_YEAST : 223- 229: tgkda Lf-KtlsS patap UBPK_YEAST : 607- 612: rfyyd Lt-Kkn-S tvity UBPX_CAEEL : 9- 14: tgssq Le-Kei-S ttesv UBPX_CAEEL : 60- 66: nykqt Lk-KsgaS kdnlv UBPX_CAEEL : 344- 349: ghyit Lv-Ksn-S fwlvf UBPX_HUMAN : 281- 286: slkda Lf-Kwe-S ktvlr UBP_MOUSE : 15- 21: eretr LwnKym-S ntyeq UBP_MOUSE : 190- 196: eayae Li-KqmwS grdth UBP_MOUSE : 560- 565: atdgk Ll-Kln-S rstla Number of patterns evaluated by Pratt:7553 Total running time: 23 seconds