------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file UCH_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename UCH_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: UBL1_HUMAN 223 UBL1_RAT 223 UBL1_YEAST 236 UBL3_HUMAN 230 UBL_DROME 227 Pratt run started at Thu Feb 6 21:31:24 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 5( 5) G-x(3)-E-L-D-G-R-x(3,4)-P-x(3)-G-x(1,2)-S 2: 36.0305 6( 5) V-x(1,3)-G-x(3)-E-L-D-G-R-x(3,4)-P-x(3)-G 3: 32.8604 5( 5) L-x(2,3)-P-x-P-x(2)-A-x(2)-L-L-F-P 4: 32.3604 5( 5) E-L-D-G-R-x(3,4)-P-x(3)-G-x(1,2)-S 5: 32.3604 5( 5) Q-x(3)-N-x-C-G-x(3,4)-L-x(0,1)-H-x(3)-N-N 6: 32.3604 5( 5) L-x(2,3)-P-x(0,1)-P-x(2)-A-x(2)-L-L-F-P 7: 31.3604 5( 5) L-x(3)-P-x-P-x(0,2)-A-x(2)-L-L-x(0,2)-F-P 8: 28.1904 5( 5) L-D-G-R-x(3,4)-P-x(3)-G-x(1,2)-S 9: 28.1904 5( 5) N-x-C-G-x(3,4)-L-x(0,1)-H-x(3)-N-N 10: 27.1904 5( 5) P-x-P-x(0,2)-A-x(2)-L-L-x(0,2)-F-P 11: 27.1904 10( 5) E-x(1,3)-L-x(3)-P-x-P-x(0,2)-A-x(2)-L-L 12: 24.0203 5( 5) D-G-R-x(3,4)-P-x(3)-G-x(1,2)-S 13: 24.0203 5( 5) C-G-x(3,4)-L-x(0,1)-H-x(3)-N-N 14: 23.0203 7( 5) P-x(0,2)-A-x(2)-L-L-x(0,2)-F-P 15: 23.0203 7( 5) P-x(2)-A-x(0,2)-L-L-x(0,2)-F-P 16: 23.0203 5( 5) V-x(1,3)-A-x(2)-L-L-x(0,2)-F-P 17: 20.8503 5( 5) A-x(2)-L-L-F-P 18: 20.8503 5( 5) P-x-E-x-N-P-E 19: 19.8503 5( 5) G-R-x(3,4)-P-x(3)-G-x(1,2)-S 20: 19.8503 5( 5) G-x-L-Y-x(0,1)-L-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 101.1618 5( 5) P-[ILM]-E-x-N-P-E-[MV]-x-[NT]-x(2)-[AIL]-x(2)-L-[AG]-[LV]-x-[GNP]-[AENQ]-W-x(3)-D-[IV]-x-[GS]-[LM]-[DET]-[DEP]-[DEP]-x-L-x(2)-[FIV]-[LP]-x(2)-[APV]-x(3)-[IL]-[LV]-L-[FL] B 2: 93.0654 6( 5) V-x(1,3)-G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x-[ST]-[DS]-[DEP]-[DET]-[AST]-x(4)-[AE]-x-[EK]-[LV]-[CV]-[KR]-x(3)-[AE]-[RS]-x(2)-[DEGN]-[EN]-[ALV]-[NR] C 3: 63.5152 5( 5) G-x-L-Y-x(0,1)-L-x(0,1)-G-[KR]-x-[DPS]-x-[PT]-[AIV]-x-[DH]-[GL]-x-[EST]-[QS]-[DE]-x-[STV]-x-[LV]-x-[DV]-A-x(2)-[MV] D 4: 57.8872 5( 5) G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] E 5: 51.6925 10( 5) E-x(1,3)-L-[AEGS]-x-[ILV]-P-x-P-x(0,2)-A-x-[AILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] F 6: 50.0204 5( 5) L-x(2,3)-P-x-P-[AV]-x-A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] G 7: 49.5204 5( 5) L-x(2,3)-P-x(0,1)-P-[AV]-x-A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] H 8: 47.5225 5( 5) L-[AEGS]-x-[ILV]-P-x-P-x(0,2)-A-x-[AILV]-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] I 9: 47.2460 5( 5) E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] J 10: 47.1681 5( 5) Q-x(3)-N-[AS]-C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] K 11: 43.0760 5( 5) L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] L 12: 42.9980 5( 5) N-[AS]-C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] M 13: 38.9059 5( 5) D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] N 14: 38.4854 5( 5) P-x-P-x(0,2)-A-x-[AILV]-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] O 15: 38.3315 6( 5) V-x(1,3)-G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P P 16: 35.6489 5( 5) C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] Q 17: 35.2620 6( 5) P-[AV]-x-A-x(0,2)-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] R 18: 35.1615 3( 3) G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P S 19: 34.8244 5( 5) A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] T 20: 34.7359 5( 5) G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 101.1618 5( 5) P-[ILM]-E-x-N-P-E-[MV]-x-[NT]-x(2)-[AIL]-x(2)-L-[AG]-[LV]-x-[GNP]-[AENQ]-W-x(3)-D-[IV]-x-[GS]-[LM]-[DET]-[DEP]-[DEP]-x-L-x(2)-[FIV]-[LP]-x(2)-[APV]-x(3)-[IL]-[LV]-L-[FL] Occurences: 5(5) UBL1_HUMAN : 5- 53: mqlk PMEiNPEMlNkvLsrLGVaGQWrfvDVlGLEEEsLgsVPapAcalLLLF pltaq UBL1_RAT : 5- 53: mqlk PMEiNPEMlNkvLakLGVaGQWrfaDVlGLEEEiLgsVPspAcalLLLF pltaq UBL1_YEAST : 10- 58: nravv PIEsNPEVfTnfAhkLGLkNEWayfDIySLTEPeLlaFLprPvkaIVLL fpine UBL3_HUMAN : 8- 56: gqrwl PLEaNPEVtNqfLkqLGLhPNWqfvDVyGMDPElLsmVPrpVcavLLLF pitek UBL_DROME : 6- 54: mltwt PLEsNPEVlTkyIhkLAVsPAWsvtDViGLEDDtLewIPrpVkafILLF pcset B 2: 93.0654 6( 5) V-x(1,3)-G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x-[ST]-[DS]-[DEP]-[DET]-[AST]-x(4)-[AE]-x-[EK]-[LV]-[CV]-[KR]-x(3)-[AE]-[RS]-x(2)-[DEGN]-[EN]-[ALV]-[NR] Occurences: 6(5) UBL1_HUMAN : 168- 213: ilfnn Vd--GhLYELDGRmpf-PVnhGaSSEDTllkdAaKVCReftEReqGEVR fsava UBL1_RAT : 168- 213: ilfnn Vd--GhLYELDGRmpf-PVnhGaSSEDSllqdAaKVCReftEReqGEVR fsava UBL1_YEAST : 171- 219: hyity VeenGgIFELDGRnlsgPLylGkSDPTAtdliEqELVRvrvASymENAN eedvl UBL3_HUMAN : 174- 221: hfial VhvdGhLYELDGRkpf-PInhGeTSDETlledAiEVCKkfmERdpDELR fnaia UBL3_HUMAN : 176- 221: ialvh Vd--GhLYELDGRkpf-PInhGeTSDETlledAiEVCKkfmERdpDELR fnaia UBL_DROME : 169- 216: hfial VnkeGtLYELDGRksf-PIkhGpTSEETfvkdAaKVCKefmARdpNEVR ftvla C 3: 63.5152 5( 5) G-x-L-Y-x(0,1)-L-x(0,1)-G-[KR]-x-[DPS]-x-[PT]-[AIV]-x-[DH]-[GL]-x-[EST]-[QS]-[DE]-x-[STV]-x-[LV]-x-[DV]-A-x(2)-[MV] Occurences: 5(5) UBL1_HUMAN : 170- 200: fnnvd GhLYeLdGRmPfPVnHGaSSEdTlLkDAakV creft UBL1_RAT : 170- 200: fnnvd GhLYeLdGRmPfPVnHGaSSEdSlLqDAakV creft UBL1_YEAST : 187- 215: grnls GpLY-L-GKsDpTAtDLiEQElVrVrVAsyM enane UBL3_HUMAN : 178- 208: lvhvd GhLYeLdGRkPfPInHGeTSDeTlLeDAieV ckkfm UBL_DROME : 173- 203: lvnke GtLYeLdGRkSfPIkHGpTSEeTfVkDAakV ckefm D 4: 57.8872 5( 5) G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Occurences: 5(5) UBL1_HUMAN : 170- 197: fnnvd GhLYELDGRmpf-PVnhGasSEDTllkdA akvcr UBL1_RAT : 170- 197: fnnvd GhLYELDGRmpf-PVnhGasSEDSllqdA akvcr UBL1_YEAST : 175- 202: yveen GgIFELDGRnlsgPLylGk-SDPTatdlI eqelv UBL3_HUMAN : 178- 205: lvhvd GhLYELDGRkpf-PInhGetSDETlledA ievck UBL_DROME : 173- 200: lvnke GtLYELDGRksf-PIkhGptSEETfvkdA akvck E 5: 51.6925 10( 5) E-x(1,3)-L-[AEGS]-x-[ILV]-P-x-P-x(0,2)-A-x-[AILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 10(5) UBL1_HUMAN : 35- 60: dvlgl EeesLGsVPaPacAlLLLFPlTAqhE nfrkk UBL1_HUMAN : 36- 60: vlgle Ees-LGsVPaPacAlLLLFPlTAqhE nfrkk UBL1_HUMAN : 37- 60: lglee Es--LGsVPaPacAlLLLFPlTAqhE nfrkk UBL1_RAT : 35- 60: dvlgl EeeiLGsVPsPacAlLLLFPlTAqhE nfrkk UBL1_RAT : 36- 60: vlgle Eei-LGsVPsPacAlLLLFPlTAqhE nfrkk UBL1_RAT : 37- 60: lglee Ei--LGsVPsPacAlLLLFPlTAqhE nfrkk UBL1_YEAST : 41- 66: iyslt EpelLAfLPrPvkAiVLLFPiNEdrK sstsq UBL1_YEAST : 43- 66: sltep El--LAfLPrPvkAiVLLFPiNEdrK sstsq UBL3_HUMAN : 40- 63: ygmdp El--LSmVPrPvcAvLLLFPiTEkyE vfrte UBL_DROME : 36- 61: dvigl EddtLEwIPrPvkAfILLFPcSEtyE khrte F 6: 50.0204 5( 5) L-x(2,3)-P-x-P-[AV]-x-A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 5(5) UBL1_HUMAN : 39- 60: leees LgsvPaPAcALLLLFPlTAqhE nfrkk UBL1_RAT : 39- 60: leeei LgsvPsPAcALLLLFPlTAqhE nfrkk UBL1_YEAST : 45- 66: tepel LaflPrPVkAIVLLFPiNEdrK sstsq UBL3_HUMAN : 42- 63: mdpel LsmvPrPVcAVLLLFPiTEkyE vfrte UBL_DROME : 40- 61: leddt LewiPrPVkAFILLFPcSEtyE khrte G 7: 49.5204 5( 5) L-x(2,3)-P-x(0,1)-P-[AV]-x-A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 5(5) UBL1_HUMAN : 39- 60: leees LgsvPaPAcALLLLFPlTAqhE nfrkk UBL1_RAT : 39- 60: leeei LgsvPsPAcALLLLFPlTAqhE nfrkk UBL1_YEAST : 45- 66: tepel LaflPrPVkAIVLLFPiNEdrK sstsq UBL3_HUMAN : 42- 63: mdpel LsmvPrPVcAVLLLFPiTEkyE vfrte UBL_DROME : 40- 61: leddt LewiPrPVkAFILLFPcSEtyE khrte H 8: 47.5225 5( 5) L-[AEGS]-x-[ILV]-P-x-P-x(0,2)-A-x-[AILV]-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 5(5) UBL1_HUMAN : 39- 60: leees LGsVPaPacAlLLL--FPlTAqhE nfrkk UBL1_HUMAN : 39- 60: leees LGsVPaP--AcALLllFPlTAqhE nfrkk UBL1_RAT : 39- 60: leeei LGsVPsPacAlLLL--FPlTAqhE nfrkk UBL1_RAT : 39- 60: leeei LGsVPsP--AcALLllFPlTAqhE nfrkk UBL1_YEAST : 45- 66: tepel LAfLPrPvkAiVLL--FPiNEdrK sstsq UBL3_HUMAN : 42- 63: mdpel LSmVPrPvcAvLLL--FPiTEkyE vfrte UBL_DROME : 40- 61: leddt LEwIPrPvkAfILL--FPcSEtyE khrte I 9: 47.2460 5( 5) E-L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Occurences: 5(5) UBL1_HUMAN : 174- 197: dghly ELDGRmpf-PVnhGasSEDTllkdA akvcr UBL1_RAT : 174- 197: dghly ELDGRmpf-PVnhGasSEDSllqdA akvcr UBL1_YEAST : 179- 202: nggif ELDGRnlsgPLylGk-SDPTatdlI eqelv UBL3_HUMAN : 182- 205: dghly ELDGRkpf-PInhGetSDETlledA ievck UBL_DROME : 177- 200: egtly ELDGRksf-PIkhGptSEETfvkdA akvck J 10: 47.1681 5( 5) Q-x(3)-N-[AS]-C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] Occurences: 5(5) UBL1_HUMAN : 84- 104: vyfmk QtigNSCGtig-LiHAVANNqD klgfe UBL1_RAT : 84- 104: vyfmk QtigNSCGtig-LmHAVANNqD nlgfe UBL1_YEAST : 84- 104: viwfk QsvkNACGlyaiL-HSLSNNqS llepg UBL3_HUMAN : 89- 109: vyfmk QtisNACGtig-LiHAIANNkD kmhfe UBL_DROME : 87- 107: lfymr QfthNACGtva-LiHSVANNkE vdidr K 11: 43.0760 5( 5) L-D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Occurences: 5(5) UBL1_HUMAN : 175- 197: ghlye LDGRmpf-PVnhGasSEDTllkdA akvcr UBL1_RAT : 175- 197: ghlye LDGRmpf-PVnhGasSEDSllqdA akvcr UBL1_YEAST : 180- 202: ggife LDGRnlsgPLylGk-SDPTatdlI eqelv UBL3_HUMAN : 183- 205: ghlye LDGRkpf-PInhGetSDETlledA ievck UBL_DROME : 178- 200: gtlye LDGRksf-PIkhGptSEETfvkdA akvck L 12: 42.9980 5( 5) N-[AS]-C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] Occurences: 5(5) UBL1_HUMAN : 88- 104: kqtig NSCGtig-LiHAVANNqD klgfe UBL1_RAT : 88- 104: kqtig NSCGtig-LmHAVANNqD nlgfe UBL1_YEAST : 88- 104: kqsvk NACGlyaiL-HSLSNNqS llepg UBL3_HUMAN : 93- 109: kqtis NACGtig-LiHAIANNkD kmhfe UBL_DROME : 91- 107: rqfth NACGtva-LiHSVANNkE vdidr M 13: 38.9059 5( 5) D-G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Occurences: 5(5) UBL1_HUMAN : 176- 197: hlyel DGRmpf-PVnhGasSEDTllkdA akvcr UBL1_RAT : 176- 197: hlyel DGRmpf-PVnhGasSEDSllqdA akvcr UBL1_YEAST : 181- 202: gifel DGRnlsgPLylGk-SDPTatdlI eqelv UBL3_HUMAN : 184- 205: hlyel DGRkpf-PInhGetSDETlledA ievck UBL_DROME : 179- 200: tlyel DGRksf-PIkhGptSEETfvkdA akvck N 14: 38.4854 5( 5) P-x-P-x(0,2)-A-x-[AILV]-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 5(5) UBL1_HUMAN : 43- 60: slgsv PaPacAlLLL--FPlTAqhE nfrkk UBL1_HUMAN : 43- 60: slgsv PaP--AcALLllFPlTAqhE nfrkk UBL1_RAT : 43- 60: ilgsv PsPacAlLLL--FPlTAqhE nfrkk UBL1_RAT : 43- 60: ilgsv PsP--AcALLllFPlTAqhE nfrkk UBL1_YEAST : 49- 66: llafl PrPvkAiVLL--FPiNEdrK sstsq UBL3_HUMAN : 46- 63: llsmv PrPvcAvLLL--FPiTEkyE vfrte UBL_DROME : 44- 61: tlewi PrPvkAfILL--FPcSEtyE khrte O 15: 38.3315 6( 5) V-x(1,3)-G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P Occurences: 6(5) UBL1_HUMAN : 168- 182: ilfnn Vd--GhLYELDGRmpf-P vnhga UBL1_RAT : 168- 182: ilfnn Vd--GhLYELDGRmpf-P vnhga UBL1_YEAST : 171- 188: hyity VeenGgIFELDGRnlsgP lylgk UBL3_HUMAN : 174- 190: hfial VhvdGhLYELDGRkpf-P inhge UBL3_HUMAN : 176- 190: ialvh Vd--GhLYELDGRkpf-P inhge UBL_DROME : 169- 185: hfial VnkeGtLYELDGRksf-P ikhgp P 16: 35.6489 5( 5) C-G-x(3,4)-L-x(0,1)-H-[AS]-[ILV]-[AS]-N-N-x-[DES] Occurences: 5(5) UBL1_HUMAN : 90- 104: tigns CGtig-LiHAVANNqD klgfe UBL1_RAT : 90- 104: tigns CGtig-LmHAVANNqD nlgfe UBL1_YEAST : 90- 104: svkna CGlyaiL-HSLSNNqS llepg UBL3_HUMAN : 95- 109: tisna CGtig-LiHAIANNkD kmhfe UBL_DROME : 93- 107: fthna CGtva-LiHSVANNkE vdidr Q 17: 35.2620 6( 5) P-[AV]-x-A-x(0,2)-L-L-x(0,2)-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 6(5) UBL1_HUMAN : 43- 60: slgsv PApAcaLLllFPlTAqhE nfrkk UBL1_HUMAN : 45- 60: gsvpa PAcAllLL--FPlTAqhE nfrkk UBL1_HUMAN : 45- 60: gsvpa PAcAl-LLl-FPlTAqhE nfrkk UBL1_HUMAN : 45- 60: gsvpa PAcA--LLllFPlTAqhE nfrkk UBL1_RAT : 45- 60: gsvps PAcAllLL--FPlTAqhE nfrkk UBL1_RAT : 45- 60: gsvps PAcAl-LLl-FPlTAqhE nfrkk UBL1_RAT : 45- 60: gsvps PAcA--LLllFPlTAqhE nfrkk UBL1_YEAST : 51- 66: aflpr PVkAivLL--FPiNEdrK sstsq UBL3_HUMAN : 48- 63: smvpr PVcAvlLL--FPiTEkyE vfrte UBL3_HUMAN : 48- 63: smvpr PVcAv-LLl-FPiTEkyE vfrte UBL_DROME : 46- 61: ewipr PVkAfiLL--FPcSEtyE khrte R 18: 35.1615 3( 3) G-x-[IL]-[FY]-E-L-D-G-R-x(3,4)-P Occurences: 3(3) UBL1_HUMAN : 170- 182: fnnvd GhLYELDGRmpf-P vnhga UBL1_RAT : 170- 182: fnnvd GhLYELDGRmpf-P vnhga UBL1_YEAST : 175- 188: yveen GgIFELDGRnlsgP lylgk S 19: 34.8244 5( 5) A-[FILV]-[ILV]-L-L-F-P-x-[NST]-[AE]-x(2)-[EK] Occurences: 5(5) UBL1_HUMAN : 48- 60: papac ALLLLFPlTAqhE nfrkk UBL1_RAT : 48- 60: pspac ALLLLFPlTAqhE nfrkk UBL1_YEAST : 54- 66: prpvk AIVLLFPiNEdrK sstsq UBL3_HUMAN : 51- 63: prpvc AVLLLFPiTEkyE vfrte UBL_DROME : 49- 61: prpvk AFILLFPcSEtyE khrte T 20: 34.7359 5( 5) G-R-x(3,4)-P-[ILV]-x(2)-G-x(1,2)-S-[DE]-[DEP]-[ST]-x(4)-[AI] Occurences: 5(5) UBL1_HUMAN : 177- 197: lyeld GRmpf-PVnhGasSEDTllkdA akvcr UBL1_RAT : 177- 197: lyeld GRmpf-PVnhGasSEDSllqdA akvcr UBL1_YEAST : 182- 202: ifeld GRnlsgPLylGk-SDPTatdlI eqelv UBL3_HUMAN : 185- 205: lyeld GRkpf-PInhGetSDETlledA ievck UBL_DROME : 180- 200: lyeld GRksf-PIkhGptSEETfvkdA akvck Number of patterns evaluated by Pratt:4550 Total running time: 1 seconds