------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file UBIQUITIN_ACTIVAT_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename UBIQUITIN_ACTIVAT_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: UBA1_HUMAN 1058 UBA1_MOUSE 1058 UBA1_WHEAT 1051 UBA1_YEAST 1024 UBA2_WHEAT 1051 UBA3_WHEAT 1053 UBAL_HUMAN 1011 UBAX_MOUSE 450 UBAY_MACRU 152 UBAY_MOUSE 442 Pratt run started at Thu Feb 6 21:30:50 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 41.2005 10( 10) E-x(3,4)-P-x-C-T-x(3)-F-P-x(4)-H-x(3)-W-A-x(3)-F 2: 40.7005 10( 10) E-x(3,4)-P-x(0,1)-C-T-x(3)-F-P-x(4)-H-x(3)-W-A-x(3)-F 3: 39.7005 10( 10) P-x-C-T-x(3)-F-P-x(4)-H-x(0,2)-T-x(0,2)-W-A-x(3)-F 4: 35.5305 10( 10) C-T-x(3)-F-P-x(4)-H-x(0,2)-T-x(0,2)-W-A-x(3)-F 5: 31.8604 10( 10) E-x(3,4)-P-x-C-T-x(3)-F-P-x(4)-H-x(0,2)-T 6: 31.3604 10( 10) T-x(3)-F-P-x(4)-H-x(0,2)-T-x(0,2)-W-A-x(3)-F 7: 25.0203 10( 10) W-A-R-x-E-F-E 8: 25.0203 10( 10) F-P-x(4)-H-x(3)-W-A-x(3)-F 9: 24.5203 10( 10) F-P-x(3,4)-H-x(3)-W-A-x(3)-F 10: 23.0203 10( 10) P-x(4)-H-x(0,2)-T-x(0,2)-W-A-x(3)-F 11: 20.8503 10( 10) A-R-x-E-F-E 12: 20.3503 14( 10) T-x(4)-G-x(3)-L-E-x(0,1)-L 13: 19.8503 10( 10) P-x(3,4)-D-x(0,1)-C-x(2)-W-A 14: 19.8503 13( 10) L-x(1,2)-G-x(3,4)-L-x(4)-A-x(4)-L 15: 19.8503 12( 10) L-x(1,2)-G-x(2,3)-L-x(4)-A-x(4)-L 16: 19.8503 12( 10) L-x(2,3)-G-x(3,4)-L-x(4)-A-x(4)-L 17: 19.8503 12( 10) L-x(2,3)-G-x(2,3)-L-x(4)-A-x(4)-L 18: 19.8503 10( 10) S-x(2)-P-P-x-K-x(0,2)-P 19: 19.3503 12( 10) L-x(2)-L-x(0,2)-E-x(0,1)-A-x(4)-L 20: 19.3503 13( 10) G-x(3,4)-L-x(4)-A-x(4)-L-x(0,2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 100.3096 10( 10) E-x(3,4)-P-x-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] B 2: 99.8096 10( 10) E-x(3,4)-P-x(0,1)-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] C 3: 92.6556 10( 10) P-[ILMV]-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] D 4: 86.0909 10( 10) C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] E 5: 81.9209 10( 10) T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] F 6: 71.7895 10( 10) F-P-x(4)-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] G 7: 71.2895 10( 10) F-P-x(3,4)-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] H 8: 67.7034 10( 10) P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] I 9: 65.3636 11( 10) L-x(1,2)-G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] J 10: 65.3636 10( 10) L-x(1,2)-G-x(2,3)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] K 11: 65.3636 10( 10) L-x(2,3)-G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] L 12: 65.3636 10( 10) L-x(2,3)-G-x(2,3)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] M 13: 64.2636 10( 10) L-x-[GV]-L-x(0,2)-E-x(0,1)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV]-x(4)-[AGP] N 14: 57.8428 10( 10) S-x-[DG]-P-P-x-K-x(0,2)-P-[ILM]-x(3)-[HKR]-x(2)-[DP]-x(2)-[FI]-[DEH]-x-[CDT]-[FILV]-x(2)-A-x-[ADS]-x-[FL]-[EQR]-[CGS] O 15: 55.7035 10( 10) E-x(3,4)-P-[ILMV]-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x-[AQ]-x-[AS]-[EKR] P 16: 40.2086 10( 10) W-A-R-x-E-F-E-x(2)-[FL]-x(2)-[DPST]-[AIP]-x-[ENQT]-[ILV]-x(4)-[PQST] Q 17: 36.0385 10( 10) A-R-x-E-F-E-x(2)-[FL]-x(2)-[DPST]-[AIP]-x-[ENQT]-[ILV]-x(4)-[PQST] R 18: 34.7673 11( 10) G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x(0,2)-V-x-[QS]-x-[PT] S 19: 34.4231 13( 10) T-x(2)-[ALV]-[AGTV]-G-x(3)-L-E-x(0,1)-L-x(2)-[AILV]-x(2)-[GNS]-x(4)-[DERS]-x(4)-[AGST] T 20: 31.8153 10( 10) P-x(3,4)-D-x(0,1)-C-[ILV]-x-W-A-x(2)-[EH]-[FW]-[EHK] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 100.3096 10( 10) E-x(3,4)-P-x-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 626- 669: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 626- 669: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 620- 663: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 594- 637: srdpp Eksi-PlCTLRsFPnkIDHTIAWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 620- 663: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 623- 666: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 591- 635: saaas EdapyPvCTVRyFPstAEHTLQWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 12- 55: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 45- 88: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 9- 52: sqdpp Eksi-PiCTLKyFPnaIEHTVQWARdeFEGlFkqSAENVNqYlTD pkfme B 2: 99.8096 10( 10) E-x(3,4)-P-x(0,1)-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 626- 669: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 626- 669: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 620- 663: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 594- 637: srdpp Eksi-PlCTLRsFPnkIDHTIAWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 620- 663: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 623- 666: srdpp Ekqa-PmCTVHsFPhnIDHCLTWARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 591- 635: saaas EdapyPvCTVRyFPstAEHTLQWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 12- 55: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 45- 88: sqdpp Eksi-PiCTLKnFPnaIEHTLQWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 9- 52: sqdpp Eksi-PiCTLKyFPnaIEHTVQWARdeFEGlFkqSAENVNqYlTD pkfme C 3: 92.6556 10( 10) P-[ILMV]-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 630- 669: peksi PICTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 630- 669: peksi PICTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 624- 663: pekqa PMCTVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 598- 637: peksi PLCTLRsFPnkIDH--TiaWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 624- 663: pekqa PMCTVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 627- 666: pekqa PMCTVHsFPhnIDHclT--WARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 596- 635: edapy PVCTVRyFPstAEH--TlqWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 16- 55: peksi PICTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 49- 88: peksi PICTLKnFPnaIEH--TlqWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 13- 52: peksi PICTLKyFPnaIEH--TvqWARdeFEGlFkqSAENVNqYlTD pkfme D 4: 86.0909 10( 10) C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 632- 669: ksipi CTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 632- 669: ksipi CTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 626- 663: kqapm CTVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 600- 637: ksipl CTLRsFPnkIDH--TiaWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 626- 663: kqapm CTVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 629- 666: kqapm CTVHsFPhnIDHclT--WARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 598- 635: apypv CTVRyFPstAEH--TlqWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 18- 55: ksipi CTLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 51- 88: ksipi CTLKnFPnaIEH--TlqWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 15- 52: ksipi CTLKyFPnaIEH--TvqWARdeFEGlFkqSAENVNqYlTD pkfme E 5: 81.9209 10( 10) T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 633- 669: sipic TLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 633- 669: sipic TLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 627- 663: qapmc TVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 601- 637: siplc TLRsFPnkIDH--TiaWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 627- 663: qapmc TVHsFPhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 630- 666: qapmc TVHsFPhnIDHclT--WARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 599- 635: pypvc TVRyFPstAEH--TlqWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 19- 55: sipic TLKnFPnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 52- 88: sipic TLKnFPnaIEH--TlqWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 16- 52: sipic TLKyFPnaIEH--TvqWARdeFEGlFkqSAENVNqYlTD pkfme F 6: 71.7895 10( 10) F-P-x(4)-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 637- 669: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 637- 669: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 631- 663: ctvhs FPhnidHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 605- 637: ctlrs FPnkidHTIAWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 631- 663: ctvhs FPhnidHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 634- 666: ctvhs FPhnidHCLTWARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 603- 635: ctvry FPstaeHTLQWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 23- 55: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 56- 88: ctlkn FPnaieHTLQWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 20- 52: ctlky FPnaieHTVQWARdeFEGlFkqSAENVNqYlTD pkfme G 7: 71.2895 10( 10) F-P-x(3,4)-H-[CT]-[ILV]-[AQT]-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 637- 669: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 637- 669: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 631- 663: ctvhs FPhnidHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 605- 637: ctlrs FPnkidHTIAWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 631- 663: ctvhs FPhnidHCLTWARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 634- 666: ctvhs FPhnidHCLTWARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 603- 635: ctvry FPstaeHTLQWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 23- 55: ctlkn FPnaieHTLQWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 56- 88: ctlkn FPnaieHTLQWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 20- 52: ctlky FPnaieHTVQWARdeFEGlFkqSAENVNqYlTD pkfme H 8: 67.7034 10( 10) P-x(2)-[AI]-[DE]-H-x(0,2)-T-x(0,2)-W-A-[KR]-x(2)-F-[EQ]-[EGS]-x-[FL]-x(2)-[PST]-[AP]-[ENT]-[ENT]-[IV]-N-x-[FHY]-x-[QST]-[ADNQ] Occurences: 10(10) UBA1_HUMAN : 638- 669: tlknf PnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD pkfve UBA1_MOUSE : 638- 669: tlknf PnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBA1_WHEAT : 632- 663: tvhsf PhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA1_YEAST : 606- 637: tlrsf PnkIDH--TiaWAKslFQGyFtdSAENVNmYlTQ pnfve UBA2_WHEAT : 632- 663: tvhsf PhnIDHclT--WARseFEGlLekTPTEVNaFlSN pttyi UBA3_WHEAT : 635- 666: tvhsf PhnIDHclT--WARseFEGlLekTPNEVNsFlSN paqya UBAL_HUMAN : 604- 635: tvryf PstAEH--TlqWARheFEElFrlSAETINhHqQA htsla UBAX_MOUSE : 24- 55: tlknf PnaIEH--TlqWARdeFEGlFkqPAENVNqYlTD skfve UBAY_MACRU : 57- 88: tlknf PnaIEH--TlqWARdeFESlFkqPAENVNqYlTN pkfve UBAY_MOUSE : 21- 52: tlkyf PnaIEH--TvqWARdeFEGlFkqSAENVNqYlTD pkfme I 9: 65.3636 11( 10) L-x(1,2)-G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] Occurences: 11(10) UBA1_HUMAN : 679- 725: ertlr La-Gtqp-LEVleAvqrSLvLqrPqTwaDcvTwachHwhTQYsnNirQL lhnfp UBA1_MOUSE : 679- 725: ertlr La-Gtqp-LEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBA1_WHEAT : 69- 116: fgsnv LvsGlqg-LGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA1_YEAST : 40- 87: qtsnv LilGlkg-LGVeiAknvVLaGvkSmTvfDpePvqlaDlsTQFflTekDI gqkrg UBA2_WHEAT : 69- 116: fgsnv LvsGlqg-LGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA3_WHEAT : 72- 119: fasdv LvsGlng-LGAeiAknlALaGvkSvTihDvkTvkmwDlsGNFflSedDI gknra UBAL_HUMAN : 36- 83: qgarv LvsGlqg-LGAevAknlVLmGvgSlTlhDphPtcwsDlaAQFllSeqDL ersra UBAX_MOUSE : 65- 111: ertlr La-Gtqp-LEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBAY_MACRU : 96- 144: fvert LrlGgtqpLEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MACRU : 98- 144: ertlr Lg-Gtqp-LEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MOUSE : 62- 108: ertlq La-Gtqp-LEVleAihcSLvLqrPqTwaDcvTwayqHwhTQYshNiqQL lhnfp J 10: 65.3636 10( 10) L-x(1,2)-G-x(2,3)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] Occurences: 10(10) UBA1_HUMAN : 679- 725: ertlr La-GtqpLEVleAvqrSLvLqrPqTwaDcvTwachHwhTQYsnNirQL lhnfp UBA1_MOUSE : 679- 725: ertlr La-GtqpLEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBA1_WHEAT : 69- 116: fgsnv LvsGlqgLGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA1_YEAST : 40- 87: qtsnv LilGlkgLGVeiAknvVLaGvkSmTvfDpePvqlaDlsTQFflTekDI gqkrg UBA2_WHEAT : 69- 116: fgsnv LvsGlqgLGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA3_WHEAT : 72- 119: fasdv LvsGlngLGAeiAknlALaGvkSvTihDvkTvkmwDlsGNFflSedDI gknra UBAL_HUMAN : 36- 83: qgarv LvsGlqgLGAevAknlVLmGvgSlTlhDphPtcwsDlaAQFllSeqDL ersra UBAX_MOUSE : 65- 111: ertlr La-GtqpLEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBAY_MACRU : 98- 144: ertlr Lg-GtqpLEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MOUSE : 62- 108: ertlq La-GtqpLEVleAihcSLvLqrPqTwaDcvTwayqHwhTQYshNiqQL lhnfp K 11: 65.3636 10( 10) L-x(2,3)-G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] Occurences: 10(10) UBA1_HUMAN : 677- 725: fvert LrlaGtqp-LEVleAvqrSLvLqrPqTwaDcvTwachHwhTQYsnNirQL lhnfp UBA1_MOUSE : 677- 725: fvert LrlaGtqp-LEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBA1_WHEAT : 69- 116: fgsnv Lvs-Glqg-LGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA1_YEAST : 40- 87: qtsnv Lil-Glkg-LGVeiAknvVLaGvkSmTvfDpePvqlaDlsTQFflTekDI gqkrg UBA2_WHEAT : 69- 116: fgsnv Lvs-Glqg-LGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA3_WHEAT : 72- 119: fasdv Lvs-Glng-LGAeiAknlALaGvkSvTihDvkTvkmwDlsGNFflSedDI gknra UBAL_HUMAN : 36- 83: qgarv Lvs-Glqg-LGAevAknlVLmGvgSlTlhDphPtcwsDlaAQFllSeqDL ersra UBAX_MOUSE : 63- 111: fvert LrlaGtqp-LEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBAY_MACRU : 96- 144: fvert LrlgGtqp-LEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MACRU : 96- 144: fvert Lrl-GgtqpLEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MOUSE : 60- 108: fmert LqlaGtqp-LEVleAihcSLvLqrPqTwaDcvTwayqHwhTQYshNiqQL lhnfp L 12: 65.3636 10( 10) L-x(2,3)-G-x(2,3)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV] Occurences: 10(10) UBA1_HUMAN : 677- 725: fvert LrlaGtqpLEVleAvqrSLvLqrPqTwaDcvTwachHwhTQYsnNirQL lhnfp UBA1_MOUSE : 677- 725: fvert LrlaGtqpLEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBA1_WHEAT : 69- 116: fgsnv Lvs-GlqgLGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA1_YEAST : 40- 87: qtsnv Lil-GlkgLGVeiAknvVLaGvkSmTvfDpePvqlaDlsTQFflTekDI gqkrg UBA2_WHEAT : 69- 116: fgsnv Lvs-GlqgLGAeiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDV gqnra UBA3_WHEAT : 72- 119: fasdv Lvs-GlngLGAeiAknlALaGvkSvTihDvkTvkmwDlsGNFflSedDI gknra UBAL_HUMAN : 36- 83: qgarv Lvs-GlqgLGAevAknlVLmGvgSlTlhDphPtcwsDlaAQFllSeqDL ersra UBAX_MOUSE : 63- 111: fvert LrlaGtqpLEVleAvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQL lhnfp UBAY_MACRU : 96- 144: fvert LrlgGtqpLEVleAvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQL lhnfp UBAY_MOUSE : 60- 108: fmert LqlaGtqpLEVleAihcSLvLqrPqTwaDcvTwayqHwhTQYshNiqQL lhnfp M 13: 64.2636 10( 10) L-x-[GV]-L-x(0,2)-E-x(0,1)-A-x(3)-[ASV]-L-x-[GL]-x(2)-[PS]-x-[DT]-x(2)-D-x(2)-[NPT]-x(4)-[DH]-x(2)-[AGST]-[NQ]-[FY]-x(2)-[NST]-x(2)-[DQ]-[ILV]-x(4)-[AGP] Occurences: 10(10) UBA1_HUMAN : 685- 730: agtqp LeVL--E-AvqrSLvLqrPqTwaDcvTwachHwhTQYsnNirQLlhnfP pdqlt UBA1_MOUSE : 685- 730: agtqp LeVL--E-AvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQLlhnfP pdqlt UBA1_WHEAT : 73- 121: vlvsg LqGLgaEiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDVgqnrA qacvq UBA1_YEAST : 44- 92: vlilg LkGLgvEiAknvVLaGvkSmTvfDpePvqlaDlsTQFflTekDIgqkrG dvtra UBA2_WHEAT : 73- 121: vlvsg LqGLgaEiAknlVLaGvkSvTlhDdgNvelwDlsSNFflSenDVgqnrA qacvq UBA3_WHEAT : 76- 124: vlvsg LnGLgaEiAknlALaGvkSvTihDvkTvkmwDlsGNFflSedDIgknrA aacva UBAL_HUMAN : 40- 88: vlvsg LqGLgaEvAknlVLmGvgSlTlhDphPtcwsDlaAQFllSeqDLersrA easqe UBAX_MOUSE : 71- 116: agtqp LeVL--E-AvqrSLvLqrPqTwgDcvTwachHwhTQYcnNirQLlhnfP pdqlt UBAY_MACRU : 104- 149: ggtqp LeVL--E-AvhrSLvLqrPhDwaDcvTwaclHwhSQYanNirQLlhnfP peq UBAY_MOUSE : 68- 113: agtqp LeVL--E-AihcSLvLqrPqTwaDcvTwayqHwhTQYshNiqQLlhnfP paqlt N 14: 57.8428 10( 10) S-x-[DG]-P-P-x-K-x(0,2)-P-[ILM]-x(3)-[HKR]-x(2)-[DP]-x(2)-[FI]-[DEH]-x-[CDT]-[FILV]-x(2)-A-x-[ADS]-x-[FL]-[EQR]-[CGS] Occurences: 10(10) UBA1_HUMAN : 621- 654: esyss SqDPPeKsiPIctlKnfPnaIEhTLqwArDeFEG lfkqp UBA1_MOUSE : 621- 654: esyss SqDPPeKsiPIctlKnfPnaIEhTLqwArDeFEG lfkqp UBA1_WHEAT : 615- 648: enyga SrDPPeKqaPMctvHsfPhnIDhCLtwArSeFEG llekt UBA1_YEAST : 589- 622: esyss SrDPPeKsiPLctlRsfPnkIDhTIawAkSlFQG yftds UBA2_WHEAT : 615- 648: enyga SrDPPeKqaPMctvHsfPhnIDhCLtwArSeFEG llekt UBA3_WHEAT : 618- 651: enyga SrDPPeKqaPMctvHsfPhnIDhCLtwArSeFEG llekt UBAL_HUMAN : 797- 828: alevw SvGPPlK--PLmfeKddDsnFHvDFvvAaAsLRC qnygi UBAX_MOUSE : 7- 40: esyss SqDPPeKsiPIctlKnfPnaIEhTLqwArDeFEG lfkqp UBAY_MACRU : 40- 73: esyss SqDPPeKsiPIctlKnfPnaIEhTLqwArDeFES lfkqp UBAY_MOUSE : 4- 37: yss SqDPPeKsiPIctlKyfPnaIEhTVqwArDeFEG lfkqs O 15: 55.7035 10( 10) E-x(3,4)-P-[ILMV]-C-T-[LV]-[HKR]-x-F-P-x(2)-[AI]-[DE]-H-x(0,2)-T-x-[AQ]-x-[AS]-[EKR] Occurences: 10(10) UBA1_HUMAN : 626- 649: sqdpp Eksi-PICTLKnFPnaIEH--TlQwAR defeg UBA1_MOUSE : 626- 649: sqdpp Eksi-PICTLKnFPnaIEH--TlQwAR defeg UBA1_WHEAT : 620- 645: srdpp Ekqa-PMCTVHsFPhnIDHclTwArSE fegll UBA1_YEAST : 594- 617: srdpp Eksi-PLCTLRsFPnkIDH--TiAwAK slfqg UBA2_WHEAT : 620- 645: srdpp Ekqa-PMCTVHsFPhnIDHclTwArSE fegll UBA3_WHEAT : 623- 648: srdpp Ekqa-PMCTVHsFPhnIDHclTwArSE fegll UBAL_HUMAN : 591- 615: saaas EdapyPVCTVRyFPstAEH--TlQwAR hefee UBAX_MOUSE : 12- 35: sqdpp Eksi-PICTLKnFPnaIEH--TlQwAR defeg UBAY_MACRU : 45- 68: sqdpp Eksi-PICTLKnFPnaIEH--TlQwAR defes UBAY_MOUSE : 9- 32: sqdpp Eksi-PICTLKyFPnaIEH--TvQwAR defeg P 16: 40.2086 10( 10) W-A-R-x-E-F-E-x(2)-[FL]-x(2)-[DPST]-[AIP]-x-[ENQT]-[ILV]-x(4)-[PQST] Occurences: 10(10) UBA1_HUMAN : 647- 668: ehtlq WARdEFEglFkqPAeNVnqylT dpkfv UBA1_MOUSE : 647- 668: ehtlq WARdEFEglFkqPAeNVnqylT dskfv UBA1_WHEAT : 641- 662: dhclt WARsEFEglLekTPtEVnaflS nptty UBA1_YEAST : 675- 696: edcik WARlEFEkkFnhDIkQLlfnfP kdakt UBA2_WHEAT : 641- 662: dhclt WARsEFEglLekTPtEVnaflS nptty UBA3_WHEAT : 644- 665: dhclt WARsEFEglLekTPnEVnsflS npaqy UBAL_HUMAN : 613- 634: ehtlq WARhEFEelFrlSAeTInhhqQ ahtsl UBAX_MOUSE : 33- 54: ehtlq WARdEFEglFkqPAeNVnqylT dskfv UBAY_MACRU : 66- 87: ehtlq WARdEFEslFkqPAeNVnqylT npkfv UBAY_MOUSE : 30- 51: ehtvq WARdEFEglFkqSAeNVnqylT dpkfm Q 17: 36.0385 10( 10) A-R-x-E-F-E-x(2)-[FL]-x(2)-[DPST]-[AIP]-x-[ENQT]-[ILV]-x(4)-[PQST] Occurences: 10(10) UBA1_HUMAN : 648- 668: htlqw ARdEFEglFkqPAeNVnqylT dpkfv UBA1_MOUSE : 648- 668: htlqw ARdEFEglFkqPAeNVnqylT dskfv UBA1_WHEAT : 642- 662: hcltw ARsEFEglLekTPtEVnaflS nptty UBA1_YEAST : 676- 696: dcikw ARlEFEkkFnhDIkQLlfnfP kdakt UBA2_WHEAT : 642- 662: hcltw ARsEFEglLekTPtEVnaflS nptty UBA3_WHEAT : 645- 665: hcltw ARsEFEglLekTPnEVnsflS npaqy UBAL_HUMAN : 614- 634: htlqw ARhEFEelFrlSAeTInhhqQ ahtsl UBAX_MOUSE : 34- 54: htlqw ARdEFEglFkqPAeNVnqylT dskfv UBAY_MACRU : 67- 87: htlqw ARdEFEslFkqPAeNVnqylT npkfv UBAY_MOUSE : 31- 51: htvqw ARdEFEglFkqSAeNVnqylT dpkfm R 18: 34.7673 11( 10) G-x(3,4)-L-[EG]-[AV]-x(2)-A-x(3)-[ASV]-L-x(0,2)-V-x-[QS]-x-[PT] Occurences: 11(10) UBA1_HUMAN : 681- 700: tlrla Gtqp-LEVleAvqrSL--VlQrP qtwad UBA1_MOUSE : 681- 700: tlrla Gtqp-LEVleAvqrSL--VlQrP qtwgd UBA1_WHEAT : 72- 93: nvlvs Glqg-LGAeiAknlVLagVkSvT lhddg UBA1_YEAST : 43- 64: nvlil Glkg-LGVeiAknvVLagVkSmT vfdpe UBA2_WHEAT : 72- 93: nvlvs Glqg-LGAeiAknlVLagVkSvT lhddg UBA3_WHEAT : 75- 96: dvlvs Glng-LGAeiAknlALagVkSvT ihdvk UBAL_HUMAN : 39- 60: rvlvs Glqg-LGAevAknlVLmgVgSlT lhdph UBAX_MOUSE : 67- 86: tlrla Gtqp-LEVleAvqrSL--VlQrP qtwgd UBAY_MACRU : 99- 119: rtlrl GgtqpLEVleAvhrSL--VlQrP hdwad UBAY_MACRU : 100- 119: tlrlg Gtqp-LEVleAvhrSL--VlQrP hdwad UBAY_MOUSE : 64- 83: tlqla Gtqp-LEVleAihcSL--VlQrP qtwad S 19: 34.4231 13( 10) T-x(2)-[ALV]-[AGTV]-G-x(3)-L-E-x(0,1)-L-x(2)-[AILV]-x(2)-[GNS]-x(4)-[DERS]-x(4)-[AGST] Occurences: 13(10) UBA1_HUMAN : 676- 704: kfver TlrLAGtqpLEvLeaVqrSlvlqRpqtwA dcvtw UBA1_HUMAN : 898- 925: aiatt TaaVVGlvcLE-LykVvqGhrqlDsyknG flnla UBA1_MOUSE : 676- 704: kfver TlrLAGtqpLEvLeaVqrSlvlqRpqtwG dcvtw UBA1_MOUSE : 898- 925: aiatt TaaVVGlvcLE-LykVvqGhqqlDsyknG flnla UBA1_WHEAT : 900- 927: aiats TamATGlvcLE-LykAlaGghkvEdyrnT fanla UBA1_YEAST : 870- 897: aiatt TslVTGlvnLE-LykLidNktdiEqyknG fvnla UBA2_WHEAT : 900- 927: aiats TamATGlvcLE-LykAlaGghkvEdyrnT fanla UBA3_WHEAT : 902- 929: aiats TamATGlvcLE-LykViaGehpvEdyrnT fanla UBAL_HUMAN : 856- 883: aiatt TaaVAGllgLE-LykVvsGprprSafrhS ylhla UBAX_MOUSE : 62- 90: kfver TlrLAGtqpLEvLeaVqrSlvlqRpqtwG dcvtw UBAX_MOUSE : 284- 311: aiatt TaaVVGlvcLE-LykVvqGhqqlDsyknG flnla UBAY_MACRU : 95- 123: kfver TlrLGGtqpLEvLeaVhrSlvlqRphdwA dcvtw UBAY_MOUSE : 59- 87: kfmer TlqLAGtqpLEvLeaIhcSlvlqRpqtwA dcvtw T 20: 31.8153 10( 10) P-x(3,4)-D-x(0,1)-C-[ILV]-x-W-A-x(2)-[EH]-[FW]-[EHK] Occurences: 10(10) UBA1_HUMAN : 700- 715: lvlqr PqtwaD-CVtWAchHWH tqysn UBA1_MOUSE : 700- 715: lvlqr PqtwgD-CVtWAchHWH tqycn UBA1_WHEAT : 632- 647: tvhsf Phni-DhCLtWArsEFE gllek UBA1_YEAST : 666- 681: slssk PhnfeD-CIkWArlEFE kkfnh UBA2_WHEAT : 632- 647: tvhsf Phni-DhCLtWArsEFE gllek UBA3_WHEAT : 635- 650: tvhsf Phni-DhCLtWArsEFE gllek UBAL_HUMAN : 662- 677: vlrvr PqnwqD-CVaWAlgHWK lcfhy UBAX_MOUSE : 86- 101: lvlqr PqtwgD-CVtWAchHWH tqycn UBAY_MACRU : 119- 134: lvlqr PhdwaD-CVtWAclHWH sqyan UBAY_MOUSE : 83- 98: lvlqr PqtwaD-CVtWAyqHWH tqysh Number of patterns evaluated by Pratt:10794 Total running time: 16 seconds