------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file TREHALASE_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TREHALASE_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TREA_BOMMO 579 TREA_ECOLI 565 TREA_RABIT 578 TREA_TENMO 555 TREA_YEAST 693 TREB_YEAST 780 TREF_ECOLI 549 Pratt run started at Thu Feb 6 21:29:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 48.5406 7( 7) P-G-G-R-F-x-E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 2: 45.8706 7( 7) G-G-R-F-x-E-x-Y-x-W-D-x-Y-x(4)-G-L 3: 44.3706 7( 7) G-G-R-F-x-E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 4: 41.2005 7( 7) I-x(0,1)-N-x(2)-R-x(2)-Y-x(2)-R-S-Q-P-P-x(4)-M 5: 41.2005 14( 7) G-x(0,1)-R-F-x-E-x-Y-x-W-D-x-Y-x(4)-G-L 6: 40.2005 7( 7) G-R-F-x-E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 7: 36.0305 7( 7) R-F-x-E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 8: 33.3604 7( 7) F-x-E-x-Y-x-W-D-x-Y-x(4)-G-L 9: 32.8604 7( 7) F-x-E-x(0,1)-Y-x-W-D-x-Y-x(4)-G-L 10: 31.8604 7( 7) F-x-E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 11: 31.3604 7( 7) Y-x(2)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M 12: 31.3604 7( 7) R-x(5)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M 13: 29.1904 7( 7) E-x-Y-x-W-D-x-Y-x(4)-G-L 14: 28.6904 7( 7) E-x(0,1)-Y-x-W-D-x-Y-x(4)-G-L 15: 28.1904 7( 7) E-x(1,2)-Y-x(0,1)-W-D-x-Y-x(4)-G-L 16: 28.1904 7( 7) E-x(0,1)-Y-x(0,1)-W-D-x-Y-x(4)-G-L 17: 27.6904 13( 7) Y-x(2,3)-R-S-Q-P-P-x(1,3)-L 18: 27.6904 7( 7) E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L 19: 27.1904 7( 7) R-S-Q-P-P-x(1,3)-L-x(0,2)-M 20: 27.1904 7( 7) R-x(2)-Y-x(1,3)-S-x(0,2)-Q-P-P-x(4)-M Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 103.3997 7( 7) G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG] B 2: 100.4725 7( 7) E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y C 3: 99.9725 7( 7) F-x-E-x(0,1)-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY] D 4: 99.9725 7( 7) E-x(0,1)-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y E 5: 99.4725 7( 7) E-x(1,2)-Y-x(0,1)-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y F 6: 99.4725 7( 7) E-x(0,1)-Y-x(0,1)-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y G 7: 98.7297 14( 7) G-x(0,1)-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG] H 8: 97.2879 7( 7) F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R I 9: 70.2184 7( 7) P-G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] J 10: 66.0484 7( 7) G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] K 11: 61.8783 7( 7) G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] L 12: 57.7083 7( 7) R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] M 13: 53.5382 7( 7) F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] N 14: 53.5009 7( 7) I-x(0,1)-N-x(2)-R-x-[FY]-Y-x(2)-R-S-Q-P-P-[FLV]-[FL]-[AT]-x-M O 15: 49.3682 7( 7) E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] P 16: 39.4908 7( 7) R-x-[FY]-Y-x(1,3)-S-x(0,2)-Q-P-P-[FLV]-[FL]-[AT]-x-M Q 17: 38.7150 7( 7) R-x-[FY]-Y-x(2)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M R 18: 31.3604 7( 7) Y-x(2)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M S 19: 27.6904 13( 7) Y-x(2,3)-R-S-Q-P-P-x(1,3)-L T 20: 27.6904 7( 7) E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 103.3997 7( 7) G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG] Occurences: 7(7) TREA_BOMMO : 159- 206: gfivp GGRFkEiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNG srwyy TREA_ECOLI : 150- 197: pyvvp GGRFrEvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNG nrsyy TREA_RABIT : 166- 213: pfivp GGRFvEfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNG grvyy TREA_TENMO : 162- 209: gfiip GGRFtEfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNG arvfy TREA_YEAST : 242- 289: pyavp GGRFnElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNA nrsyy TREB_YEAST : 329- 376: pyavp GGRFnElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNA nrsyy TREF_ECOLI : 166- 213: syivp GGRFsEtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNG nrtyy B 2: 100.4725 7( 7) E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y Occurences: 7(7) TREA_BOMMO : 164- 211: ggrfk EiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwYY qersq TREA_ECOLI : 155- 202: ggrfr EvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsYY lsrsq TREA_RABIT : 171- 218: ggrfv EfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvYY lqrsq TREA_TENMO : 167- 214: ggrft EfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvFY lnrsq TREA_YEAST : 247- 294: ggrfn ElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANRsYY lcrsq TREB_YEAST : 334- 381: ggrfn ElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANRsYY lcrsq TREF_ECOLI : 171- 218: ggrfs EtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtYY lsrsq C 3: 99.9725 7( 7) F-x-E-x(0,1)-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY] Occurences: 7(7) TREA_BOMMO : 162- 210: vpggr FkEiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwY yqers TREA_ECOLI : 153- 201: vpggr FrEvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsY ylsrs TREA_RABIT : 169- 217: vpggr FvEfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvY ylqrs TREA_TENMO : 165- 213: ipggr FtEfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvF ylnrs TREA_YEAST : 245- 293: vpggr FnElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANRsY ylcrs TREB_YEAST : 332- 380: vpggr FnElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANRsY ylcrs TREF_ECOLI : 169- 217: vpggr FsEtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtY ylsrs D 4: 99.9725 7( 7) E-x(0,1)-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y Occurences: 7(7) TREA_BOMMO : 164- 211: ggrfk EiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwYY qersq TREA_ECOLI : 155- 202: ggrfr EvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsYY lsrsq TREA_RABIT : 171- 218: ggrfv EfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvYY lqrsq TREA_TENMO : 167- 214: ggrft EfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvFY lnrsq TREA_YEAST : 247- 294: ggrfn ElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANRsYY lcrsq TREB_YEAST : 334- 381: ggrfn ElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANRsYY lcrsq TREF_ECOLI : 171- 218: ggrfs EtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtYY lsrsq E 5: 99.4725 7( 7) E-x(1,2)-Y-x(0,1)-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y Occurences: 7(7) TREA_BOMMO : 164- 211: ggrfk EiyY-WDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwYY qersq TREA_BOMMO : 164- 211: ggrfk Ei-YyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwYY qersq TREA_ECOLI : 155- 202: ggrfr EvyY-WDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsYY lsrsq TREA_ECOLI : 155- 202: ggrfr Ev-YyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsYY lsrsq TREA_RABIT : 171- 218: ggrfv EfyY-WDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvYY lqrsq TREA_RABIT : 171- 218: ggrfv Ef-YyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvYY lqrsq TREA_TENMO : 167- 214: ggrft EfyY-WDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvFY lnrsq TREA_TENMO : 167- 214: ggrft Ef-YyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvFY lnrsq TREA_YEAST : 247- 294: ggrfn El-YgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANRsYY lcrsq TREB_YEAST : 334- 381: ggrfn El-YgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANRsYY lcrsq TREF_ECOLI : 171- 218: ggrfs EtyY-WDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtYY lsrsq TREF_ECOLI : 171- 218: ggrfs Et-YyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtYY lsrsq F 6: 99.4725 7( 7) E-x(0,1)-Y-x(0,1)-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R-x-[FY]-Y Occurences: 7(7) TREA_BOMMO : 164- 211: ggrfk EiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSRwYY qersq TREA_ECOLI : 155- 202: ggrfr EvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNRsYY lsrsq TREA_RABIT : 171- 218: ggrfv EfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGRvYY lqrsq TREA_TENMO : 167- 214: ggrft EfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGARvFY lnrsq TREA_YEAST : 247- 294: ggrfn ElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANRsYY lcrsq TREB_YEAST : 334- 381: ggrfn ElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANRsYY lcrsq TREF_ECOLI : 171- 218: ggrfs EtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNRtYY lsrsq G 7: 98.7297 14( 7) G-x(0,1)-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG] Occurences: 14(7) TREA_BOMMO : 159- 206: gfivp GgRFkEiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNG srwyy TREA_BOMMO : 160- 206: fivpg G-RFkEiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNG srwyy TREA_ECOLI : 150- 197: pyvvp GgRFrEvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNG nrsyy TREA_ECOLI : 151- 197: yvvpg G-RFrEvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNG nrsyy TREA_RABIT : 166- 213: pfivp GgRFvEfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNG grvyy TREA_RABIT : 167- 213: fivpg G-RFvEfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNG grvyy TREA_TENMO : 162- 209: gfiip GgRFtEfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNG arvfy TREA_TENMO : 163- 209: fiipg G-RFtEfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNG arvfy TREA_YEAST : 242- 289: pyavp GgRFnElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNA nrsyy TREA_YEAST : 243- 289: yavpg G-RFnElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNA nrsyy TREB_YEAST : 329- 376: pyavp GgRFnElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNA nrsyy TREB_YEAST : 330- 376: yavpg G-RFnElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNA nrsyy TREF_ECOLI : 166- 213: syivp GgRFsEtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNG nrtyy TREF_ECOLI : 167- 213: yivpg G-RFsEtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNG nrtyy H 8: 97.2879 7( 7) F-x-E-x-Y-x-W-D-[AS]-Y-x(4)-G-L-[AIL]-x-[AST]-[DEGN]-x(2)-[DE]-x-[ALV]-x-[CDG]-M-[AILV]-[ADEQ]-x-[FL]-[AIL]-x(2)-[ILV]-x(2)-[FY]-[GS]-x-I-[LP]-N-[AG]-[AGNS]-R Occurences: 7(7) TREA_BOMMO : 162- 208: vpggr FkEiYyWDAYwiieGLLiTDmtEtAkGMIEnLIelLykFGhIPNGSR wyyqe TREA_ECOLI : 153- 199: vpggr FrEvYyWDSYftmlGLAeSGhwDkVaDMVAnFAheIdtYGhIPNGNR syyls TREA_RABIT : 169- 215: vpggr FvEfYyWDSYwvmeGLLlSEmaEtVkGMLQnFLdlVtaYGhIPNGGR vyylq TREA_TENMO : 165- 211: ipggr FtEfYyWDSYwiveGLLlSDmhEtVrGMLDnFLsiVekYGfIPNGAR vfyln TREA_YEAST : 245- 291: vpggr FnElYgWDSYmmalGLLeANktDvArGMVEhFIfeInhYGkILNANR syylc TREB_YEAST : 332- 378: vpggr FnElYgWDSYlmalGLIeSNkvDvArGMVEhFIfeIdhYSkILNANR syylc TREF_ECOLI : 169- 215: vpggr FsEtYyWDSYftmlGLAeSGreDlLkCMADnFAwmIenYGhIPNGNR tyyls I 9: 70.2184 7( 7) P-G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 158- 194: hgfiv PGGRFkEiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 149- 184: epyvv PGGRFrEvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 165- 201: hpfiv PGGRFvEfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 161- 197: ngfii PGGRFtEfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 241- 276: ypyav PGGRFnElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 328- 363: ypyav PGGRFnElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 165- 200: qsyiv PGGRFsEtYyWDSYftm--LgLAESgreDllkcMaDnF awmie J 10: 66.0484 7( 7) G-G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 159- 194: gfivp GGRFkEiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 150- 184: pyvvp GGRFrEvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 166- 201: pfivp GGRFvEfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 162- 197: gfiip GGRFtEfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 242- 276: pyavp GGRFnElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 329- 363: pyavp GGRFnElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 166- 200: syivp GGRFsEtYyWDSYftm--LgLAESgreDllkcMaDnF awmie K 11: 61.8783 7( 7) G-R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 160- 194: fivpg GRFkEiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 151- 184: yvvpg GRFrEvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 167- 201: fivpg GRFvEfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 163- 197: fiipg GRFtEfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 243- 276: yavpg GRFnElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 330- 363: yavpg GRFnElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 167- 200: yivpg GRFsEtYyWDSYftm--LgLAESgreDllkcMaDnF awmie L 12: 57.7083 7( 7) R-F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 161- 194: ivpgg RFkEiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 152- 184: vvpgg RFrEvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 168- 201: ivpgg RFvEfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 164- 197: iipgg RFtEfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 244- 276: avpgg RFnElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 331- 363: avpgg RFnElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 168- 200: ivpgg RFsEtYyWDSYftm--LgLAESgreDllkcMaDnF awmie M 13: 53.5382 7( 7) F-x-E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 162- 194: vpggr FkEiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 153- 184: vpggr FrEvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 169- 201: vpggr FvEfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 165- 197: ipggr FtEfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 245- 276: vpggr FnElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 332- 363: vpggr FnElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 169- 200: vpggr FsEtYyWDSYftm--LgLAESgreDllkcMaDnF awmie N 14: 53.5009 7( 7) I-x(0,1)-N-x(2)-R-x-[FY]-Y-x(2)-R-S-Q-P-P-[FLV]-[FL]-[AT]-x-M Occurences: 7(7) TREA_BOMMO : 203- 223: ykfgh IpNgsRwYYqeRSQPPLLAaM iklyy TREA_ECOLI : 194- 214: dtygh IpNgnRsYYlsRSQPPFFAlM vella TREA_RABIT : 210- 230: taygh IpNggRvYYlqRSQPPLLTlM mdryv TREA_TENMO : 206- 226: ekygf IpNgaRvFYlnRSQPPLLTlM vslyv TREA_YEAST : 286- 306: nhygk IlNanRsYYlcRSQPPFLTeM alvvf TREB_YEAST : 373- 393: dhysk IlNanRsYYlcRSQPPFLTdM allvf TREF_ECOLI : 210- 230: enygh IpNgnRtYYlsRSQPPVFAlM velfe O 15: 49.3682 7( 7) E-x-Y-x-W-D-[AS]-Y-x(3,5)-L-x(0,1)-L-[AIL]-[EST]-[ADES]-x(3)-[DT]-x(4)-[ILM]-x-[ADEN]-x-[FIL] Occurences: 7(7) TREA_BOMMO : 164- 194: ggrfk EiYyWDAYwiiegL-LITDmteTakgmIeNlI ellyk TREA_ECOLI : 155- 184: ggrfr EvYyWDSYftm--LgLAESghwDkvadMvAnF aheid TREA_RABIT : 171- 201: ggrfv EfYyWDSYwvmegL-LLSEmaeTvkgmLqNfL dlvta TREA_TENMO : 167- 197: ggrft EfYyWDSYwivegL-LLSDmheTvrgmLdNfL sivek TREA_YEAST : 247- 276: ggrfn ElYgWDSYmma--LgLLEAnktDvargMvEhF ifein TREB_YEAST : 334- 363: ggrfn ElYgWDSYlma--LgLIESnkvDvargMvEhF ifeid TREF_ECOLI : 171- 200: ggrfs EtYyWDSYftm--LgLAESgreDllkcMaDnF awmie P 16: 39.4908 7( 7) R-x-[FY]-Y-x(1,3)-S-x(0,2)-Q-P-P-[FLV]-[FL]-[AT]-x-M Occurences: 7(7) TREA_BOMMO : 208- 223: ipngs RwYYqerS--QPPLLAaM iklyy TREA_ECOLI : 199- 214: ipngn RsYYlsrS--QPPFFAlM vella TREA_ECOLI : 199- 214: ipngn RsYYl--SrsQPPFFAlM vella TREA_RABIT : 215- 230: ipngg RvYYlqrS--QPPLLTlM mdryv TREA_TENMO : 211- 226: ipnga RvFYlnrS--QPPLLTlM vslyv TREA_YEAST : 291- 306: ilnan RsYYlcrS--QPPFLTeM alvvf TREB_YEAST : 378- 393: ilnan RsYYlcrS--QPPFLTdM allvf TREF_ECOLI : 215- 230: ipngn RtYYlsrS--QPPVFAlM velfe TREF_ECOLI : 215- 230: ipngn RtYYl--SrsQPPVFAlM velfe Q 17: 38.7150 7( 7) R-x-[FY]-Y-x(2)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M Occurences: 7(7) TREA_BOMMO : 208- 223: ipngs RwYYqeRSQPPl--LaaM iklyy TREA_ECOLI : 199- 214: ipngn RsYYlsRSQPPffaL--M vella TREA_RABIT : 215- 230: ipngg RvYYlqRSQPPlltL--M mdryv TREA_RABIT : 215- 231: ipngg RvYYlqRSQPPlltLm-M dryva TREA_RABIT : 215- 230: ipngg RvYYlqRSQPPl--LtlM mdryv TREA_TENMO : 211- 226: ipnga RvFYlnRSQPPlltL--M vslyv TREA_TENMO : 211- 226: ipnga RvFYlnRSQPPl--LtlM vslyv TREA_YEAST : 291- 306: ilnan RsYYlcRSQPPf--LteM alvvf TREB_YEAST : 378- 393: ilnan RsYYlcRSQPPf--LtdM allvf TREF_ECOLI : 215- 230: ipngn RtYYlsRSQPPvfaL--M velfe R 18: 31.3604 7( 7) Y-x(2)-R-S-Q-P-P-x(1,3)-L-x(0,2)-M Occurences: 7(7) TREA_BOMMO : 211- 223: gsrwy YqeRSQPPl--LaaM iklyy TREA_ECOLI : 202- 214: gnrsy YlsRSQPPffaL--M vella TREA_RABIT : 218- 230: ggrvy YlqRSQPPlltL--M mdryv TREA_RABIT : 218- 231: ggrvy YlqRSQPPlltLm-M dryva TREA_RABIT : 218- 230: ggrvy YlqRSQPPl--LtlM mdryv TREA_TENMO : 214- 226: garvf YlnRSQPPlltL--M vslyv TREA_TENMO : 214- 226: garvf YlnRSQPPl--LtlM vslyv TREA_YEAST : 294- 306: anrsy YlcRSQPPf--LteM alvvf TREB_YEAST : 381- 393: anrsy YlcRSQPPf--LtdM allvf TREF_ECOLI : 218- 230: gnrty YlsRSQPPvfaL--M velfe S 19: 27.6904 13( 7) Y-x(2,3)-R-S-Q-P-P-x(1,3)-L Occurences: 13(7) TREA_BOMMO : 210- 220: ngsrw YyqeRSQPPl--L aamik TREA_BOMMO : 211- 220: gsrwy Yqe-RSQPPl--L aamik TREA_ECOLI : 201- 213: ngnrs YylsRSQPPffaL mvell TREA_ECOLI : 202- 213: gnrsy Yls-RSQPPffaL mvell TREA_RABIT : 217- 227: nggrv YylqRSQPPl--L tlmmd TREA_RABIT : 217- 229: nggrv YylqRSQPPlltL mmdry TREA_RABIT : 218- 227: ggrvy Ylq-RSQPPl--L tlmmd TREA_RABIT : 218- 229: ggrvy Ylq-RSQPPlltL mmdry TREA_TENMO : 214- 223: garvf Yln-RSQPPl--L tlmvs TREA_TENMO : 214- 225: garvf Yln-RSQPPlltL mvsly TREA_YEAST : 293- 303: nanrs YylcRSQPPf--L temal TREA_YEAST : 294- 303: anrsy Ylc-RSQPPf--L temal TREB_YEAST : 380- 390: nanrs YylcRSQPPf--L tdmal TREB_YEAST : 381- 390: anrsy Ylc-RSQPPf--L tdmal TREF_ECOLI : 217- 229: ngnrt YylsRSQPPvfaL mvelf TREF_ECOLI : 218- 229: gnrty Yls-RSQPPvfaL mvelf T 20: 27.6904 7( 7) E-x-Y-x-W-D-x-Y-x(3,5)-L-x(0,1)-L Occurences: 7(7) TREA_BOMMO : 164- 178: ggrfk EiYyWDaYwiiegL-L itdmt TREA_ECOLI : 155- 168: ggrfr EvYyWDsYftm--LgL aesgh TREA_RABIT : 171- 185: ggrfv EfYyWDsYwvmegL-L lsema TREA_RABIT : 171- 186: ggrfv EfYyWDsYwvmegLlL semae TREA_TENMO : 167- 181: ggrft EfYyWDsYwivegL-L lsdmh TREA_TENMO : 167- 182: ggrft EfYyWDsYwivegLlL sdmhe TREA_YEAST : 247- 261: ggrfn ElYgWDsYmmalgL-L eankt TREA_YEAST : 247- 260: ggrfn ElYgWDsYmma--LgL leank TREB_YEAST : 334- 347: ggrfn ElYgWDsYlma--LgL iesnk TREF_ECOLI : 171- 184: ggrfs EtYyWDsYftm--LgL aesgr Number of patterns evaluated by Pratt:21637 Total running time: 18 seconds