------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file TRANSPOSASE_MUTATOR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TRANSPOSASE_MUTATOR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TRA0_MYCSM 323 TRA1_LACHE 369 TRA1_MYCBO 415 TRA2_THIFE 296 TRA3_RHIME 400 TRA5_LACLA 391 TRA6_BURCE 388 TRA6_STAAU 390 TRA_CORDI 343 Pratt run started at Thu Feb 6 21:28:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 9( 9) Q-x-C-x(2)-H 2: 12.0102 11( 9) V-x(2,3)-D-x(5)-L 3: 12.0102 20( 9) A-x(0,1)-L-x-A 4: 12.0102 13( 9) K-x(3,4)-A-V 5: 12.0102 11( 9) Q-x(1,2)-C-x(2)-H 6: 12.0102 11( 9) A-x-G-x(4,5)-G 7: 11.5102 13( 9) L-x(0,2)-L-x-D 8: 11.5102 16( 9) L-x(1,2)-A-x(0,1)-V 9: 11.5102 19( 9) A-x(3,4)-L-x(2,3)-A 10: 11.5102 10( 9) L-x(4,5)-K-x(0,1)-R 11: 11.5102 14( 9) S-x(2,3)-L-x(3,4)-L 12: 11.5102 17( 9) L-x(1,2)-A-x(2,3)-D 13: 11.5102 14( 9) E-x(0,2)-L-x-A 14: 11.5102 34( 9) A-x(1,2)-L-x(1,2)-A 15: 11.5102 14( 9) A-x(2,3)-K-x(0,1)-R 16: 11.5102 13( 9) A-x(0,1)-V-x(2,3)-L 17: 11.5102 22( 9) A-x(1,3)-A-x-L 18: 11.5102 17( 9) K-x(0,1)-A-x(1,2)-A 19: 11.5102 15( 9) A-x(0,1)-K-x(3,4)-A 20: 11.5102 27( 9) A-x(4,5)-A-x(3,4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 14.1600 12( 9) A-x(1,2)-L-x(1,2)-A-[FLV] B 2: 14.1400 17( 9) A-x(4,5)-A-x(3,4)-L-x-[ADV] C 3: 13.4121 15( 9) L-x(1,2)-A-x(2,3)-D-x(3)-[ADEGT] D 4: 12.5102 9( 9) Q-x-C-x(2)-H E 5: 12.0102 11( 9) V-x(2,3)-D-x(5)-L F 6: 12.0102 20( 9) A-x(0,1)-L-x-A G 7: 12.0102 13( 9) K-x(3,4)-A-V H 8: 12.0102 11( 9) Q-x(1,2)-C-x(2)-H I 9: 12.0102 11( 9) A-x-G-x(4,5)-G J 10: 11.5102 13( 9) L-x(0,2)-L-x-D K 11: 11.5102 16( 9) L-x(1,2)-A-x(0,1)-V L 12: 11.5102 19( 9) A-x(3,4)-L-x(2,3)-A M 13: 11.5102 10( 9) L-x(4,5)-K-x(0,1)-R N 14: 11.5102 14( 9) S-x(2,3)-L-x(3,4)-L O 15: 11.5102 14( 9) E-x(0,2)-L-x-A P 16: 11.5102 14( 9) A-x(2,3)-K-x(0,1)-R Q 17: 11.5102 13( 9) A-x(0,1)-V-x(2,3)-L R 18: 11.5102 22( 9) A-x(1,3)-A-x-L S 19: 11.5102 17( 9) K-x(0,1)-A-x(1,2)-A T 20: 11.5102 15( 9) A-x(0,1)-K-x(3,4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 14.1600 12( 9) A-x(1,2)-L-x(1,2)-A-[FLV] Occurences: 12(9) TRA0_MYCSM : 158- 164: wfhkq AnvLa-AL pksah TRA0_MYCSM : 280- 286: wravn AphLv-AL vraga TRA1_LACHE : 36- 41: ndlle Ae-Lt-AF lgynp TRA1_MYCBO : 141- 148: qvsim AkeLdeAV eafrt TRA2_THIFE : 13- 20: llgde AkgLspAV lgrlk TRA2_THIFE : 200- 205: lekdr Ae-Ll-AF ydfpa TRA3_RHIME : 287- 292: ardae Ag-Lk-AL eafee TRA5_LACLA : 36- 41: ndllq Ae-Ls-AF lgyep TRA5_LACLA : 279- 286: ktiyr AenLemAV qalen TRA6_BURCE : 182- 187: rivdc Av-Li-AV gieas TRA6_STAAU : 363- 370: pnqts AnrLigAV lmdlh TRA_CORDI : 212- 217: edtar Aa-Ld-AF easel B 2: 14.1400 17( 9) A-x(4,5)-A-x(3,4)-L-x-[ADV] Occurences: 17(9) TRA0_MYCSM : 162- 175: qanvl AalpksAhpsaLaA ikeiy TRA0_MYCSM : 163- 175: anvla Alpks-AhpsaLaA ikeiy TRA1_LACHE : 280- 291: qihqq Ankaa-Avdv-LhA fyakw TRA1_MYCBO : 102- 115: kraer AltsvvAtcylLgV strrm TRA1_MYCBO : 228- 240: glsgv AlvtsdAhag-LvA aigat TRA1_MYCBO : 236- 248: tsdah Aglva-AigatLpA aawqr TRA1_MYCBO : 309- 321: klpav AehldtArtd-LlA ftafp TRA2_THIFE : 13- 26: llgde AkglspAvlgrLkA ewaqe TRA2_THIFE : 167- 179: qeiwm AanrqaAeka-LdV fvrny TRA2_THIFE : 167- 179: qeiwm Aanrq-AaekaLdV fvrny TRA2_THIFE : 168- 179: eiwma Anrqa-Aeka-LdV fvrny TRA3_RHIME : 282- 294: raiyr Ardae-AglkaLeA feegy TRA5_LACLA : 199- 212: lgyei ApnennAswstLlD klqnq TRA6_BURCE : 284- 296: raifn ApdrteAerl-LkA altlw TRA6_BURCE : 309- 322: ehpkl AewaetAipesLtV fdfpa TRA6_STAAU : 363- 376: pnqts AnrligAvlmdLhD ewiys TRA_CORDI : 204- 216: revyt AptedtAraa-LdA fease TRA_CORDI : 321- 333: iegak AtgwkqAinq-LaV aypdr C 3: 13.4121 15( 9) L-x(1,2)-A-x(2,3)-D-x(3)-[ADEGT] Occurences: 15(9) TRA0_MYCSM : 40- 50: stitr Lt-AqwqDearA fgard TRA0_MYCSM : 96- 105: dgrke Lv-Ait-DgyrE saesw TRA1_LACHE : 26- 36: llrke LqqAvn-DlleA eltaf TRA1_MYCBO : 17- 27: lladq LaqAsp-DllrG llstf TRA1_MYCBO : 36- 46: tfiaa LmgAea-DalcG agyre TRA1_MYCBO : 298- 307: qydrv Ld-Alt-DklpA vaehl TRA2_THIFE : 111- 120: letap Ll-Aig-DgamG fwaal TRA2_THIFE : 202- 211: kdrae Ll-Afy-DfpaE hwrhi TRA3_RHIME : 39- 48: lseri Ln-Ael-DdhlD verle TRA3_RHIME : 135- 145: dvspd LisAvt-DtvlE avgew TRA3_RHIME : 226- 235: gcqdi Li-Avv-DglkG fpeai TRA5_LACLA : 26- 36: ffrts LetAmn-DllqA elsaf TRA6_BURCE : 369- 379: rlvsa Ll-AeldDewmT gkvyl TRA6_STAAU : 366- 377: tsanr LigAvlmDlhdE wiyss TRA_CORDI : 331- 341: qainq LavAyp-DrfaD yl D 4: 12.5102 9( 9) Q-x-C-x(2)-H Occurences: 9(9) TRA0_MYCSM : 150- 155: patke QrCwfH kqanv TRA1_LACHE : 247- 252: pqahf QrClvH vmrni TRA1_MYCBO : 252- 257: paaaw QrCrtH yaanl TRA2_THIFE : 135- 140: petgq QrCwvH ktani TRA3_RHIME : 250- 255: pqtiv QtCivH lirhs TRA5_LACLA : 247- 252: plakq QrCliH isrnl TRA6_BURCE : 251- 256: psvpw QrCqfH lqqna TRA6_STAAU : 252- 257: tnvsw QrCqvH flrni TRA_CORDI : 172- 177: pnsmv QtCivH liraa E 5: 12.0102 11( 9) V-x(2,3)-D-x(5)-L Occurences: 11(9) TRA0_MYCSM : 73- 82: gihlk Vrl-DqeklcL lvmlg TRA1_LACHE : 160- 169: dkffc Vyl-DatyvpL rretf TRA1_MYCBO : 291- 301: daesv VaqyDrvldaL tdklp TRA2_THIFE : 276- 286: qlfag VkfiDgipanL tlpdd TRA3_RHIME : 20- 30: rdpse VfgkDgllddL kkals TRA3_RHIME : 188- 197: yvala Vla-DgskeiL glwie TRA5_LACLA : 159- 169: eanys VlflDgtylpL rrgtv TRA6_BURCE : 82- 92: fqvpq VrssDfypsaL ekgtr TRA6_STAAU : 21- 30: iieys Vkd-DvskniL ttvfn TRA_CORDI : 110- 119: ymavg Vdm-DgikhiL glwia TRA_CORDI : 333- 343: inqla VaypDrfadyL F 6: 12.0102 20( 9) A-x(0,1)-L-x-A Occurences: 20(9) TRA0_MYCSM : 30- 34: flgsg AgLsA stitr TRA0_MYCSM : 172- 175: sahps A-LaA ikeiy TRA1_LACHE : 36- 40: ndlle AeLtA flgyn TRA1_MYCBO : 236- 240: tsdah AgLvA aigat TRA1_MYCBO : 244- 248: vaaig AtLpA aawqr TRA1_MYCBO : 260- 264: rthya AnLmA atpkp TRA2_THIFE : 109- 113: rglet ApLlA igdga TRA2_THIFE : 200- 204: lekdr AeLlA fydfp TRA3_RHIME : 275- 278: rtvvp A-LrA iyrar TRA3_RHIME : 287- 291: ardae AgLkA leafe TRA3_RHIME : 291- 294: eaglk A-LeA feegy TRA5_LACLA : 36- 40: ndllq AeLsA flgye TRA5_LACLA : 88- 92: gnfsp AlLpA ygrrd TRA6_BURCE : 43- 47: kiers AfLgA rpyer TRA6_BURCE : 182- 186: rivdc AvLiA vgiea TRA6_BURCE : 235- 239: iaddh AgLkA arrav TRA6_BURCE : 368- 371: lrlvs A-LlA eldde TRA6_STAAU : 102- 105: qrnek A-LmA smlem TRA_CORDI : 212- 216: edtar AaLdA fease TRA_CORDI : 213- 216: dtara A-LdA fease G 7: 12.0102 13( 9) K-x(3,4)-A-V Occurences: 13(9) TRA0_MYCSM : 187- 192: aedid Kaqi-AV kafea TRA0_MYCSM : 202- 207: adfga Kypk-AV akitd TRA1_LACHE : 24- 30: ndllr KelqqAV ndlle TRA1_MYCBO : 142- 148: vsima KeldeAV eafrt TRA2_THIFE : 14- 20: lgdea KglspAV lgrlk TRA2_THIFE : 187- 192: rnyqa Kypk-AV aklek TRA3_RHIME : 344- 349: ealns Klrr-AV rsrgh TRA3_RHIME : 387- 392: ewvea Ktqf-AV ifger TRA5_LACLA : 262- 268: laskv KradrAV ileqf TRA6_BURCE : 238- 244: dhagl KaarrAV lpsvp TRA6_STAAU : 272- 278: pkkns KsfreAV kgifk TRA_CORDI : 102- 108: hrvvn KscymAV gvdmd TRA_CORDI : 156- 162: ccdgl KglpeAV eatwp H 8: 12.0102 11( 9) Q-x(1,2)-C-x(2)-H Occurences: 11(9) TRA0_MYCSM : 150- 155: patke Qr-CwfH kqanv TRA1_LACHE : 247- 252: pqahf Qr-ClvH vmrni TRA1_MYCBO : 252- 257: paaaw Qr-CrtH yaanl TRA2_THIFE : 134- 140: ypetg QqrCwvH ktani TRA2_THIFE : 135- 140: petgq Qr-CwvH ktani TRA3_RHIME : 250- 255: pqtiv Qt-CivH lirhs TRA5_LACLA : 246- 252: yplak QqrCliH isrnl TRA5_LACLA : 247- 252: plakq Qr-CliH isrnl TRA6_BURCE : 251- 256: psvpw Qr-CqfH lqqna TRA6_STAAU : 252- 257: tnvsw Qr-CqvH flrni TRA_CORDI : 172- 177: pnsmv Qt-CivH liraa I 9: 12.0102 11( 9) A-x-G-x(4,5)-G Occurences: 11(9) TRA0_MYCSM : 128- 135: tapvl AiGdgal-G fwkav TRA1_LACHE : 182- 189: eavyi AiGikpn-G hkevi TRA1_MYCBO : 187- 194: vhtli AtGvnae-G yreil TRA1_MYCBO : 192- 200: atgvn AeGyreilG iqvts TRA2_THIFE : 113- 120: tapll AiGdgam-G fwaal TRA3_RHIME : 190- 198: alavl AdGskeilG lwieq TRA5_LACLA : 182- 189: ecihi AlGitpe-G qkavl TRA6_BURCE : 186- 193: cavli AvGieas-G krrvl TRA6_BURCE : 191- 199: avgie AsGkrrvlG cevat TRA6_STAAU : 187- 194: kschi AiGitkd-G dreii TRA_CORDI : 107- 114: kscym AvGvdmd-G ikhil J 10: 11.5102 13( 9) L-x(0,2)-L-x-D Occurences: 13(9) TRA0_MYCSM : 113- 116: eswad L--LrD ckrrg TRA1_LACHE : 224- 228: leqve Lf-LsD gvvgm TRA1_MYCBO : 12- 15: idteq L--LaD qlaqa TRA1_MYCBO : 298- 303: qydrv LdaLtD klpav TRA2_THIFE : 8- 11: ealsi L--LgD eakgl TRA2_THIFE : 95- 100: skasw LeiLrD lqarg TRA2_THIFE : 286- 290: gipan Lt-LpD dqqta TRA3_RHIME : 26- 29: fgkdg L--LdD lkkal TRA3_RHIME : 186- 191: avyva LavLaD gskei TRA5_LACLA : 386- 391: qcadt LesLfD TRA6_BURCE : 370- 375: lvsal LaeLdD ewmtg TRA6_STAAU : 371- 376: ligav LmdLhD ewiys TRA_CORDI : 21- 26: kgtrr LteLdD miisl K 11: 11.5102 16( 9) L-x(1,2)-A-x(0,1)-V Occurences: 16(9) TRA0_MYCSM : 283- 287: vnaph Lv-AlV ragav TRA1_LACHE : 26- 30: llrke LqqA-V ndlle TRA1_MYCBO : 144- 148: imake LdeA-V eafrt TRA1_MYCBO : 305- 308: altdk Lp-A-V aehld TRA1_MYCBO : 365- 369: asiir LvgA-V laeqh TRA2_THIFE : 16- 20: deakg LspA-V lgrlk TRA2_THIFE : 272- 276: ekvlq Lf-AgV kfidg TRA3_RHIME : 135- 139: dvspd LisA-V tdtvl TRA3_RHIME : 144- 147: vtdtv Le-A-V gewqn TRA3_RHIME : 226- 229: gcqdi Li-A-V vdglk TRA3_RHIME : 226- 230: gcqdi Li-AvV dglkg TRA3_RHIME : 345- 349: alnsk LrrA-V rsrgh TRA5_LACLA : 282- 286: yraen LemA-V qalen TRA6_BURCE : 133- 138: gpeis LssAqV sraaa TRA6_BURCE : 184- 187: vdcav Li-A-V gieas TRA6_STAAU : 366- 370: tsanr LigA-V lmdlh TRA_CORDI : 158- 162: dglkg LpeA-V eatwp L 12: 11.5102 19( 9) A-x(3,4)-L-x(2,3)-A Occurences: 19(9) TRA0_MYCSM : 21- 30: ndftp AleqfLgsgA glsas TRA0_MYCSM : 262- 270: raagl AmaykLid-A aaarw TRA0_MYCSM : 262- 271: raagl AmaykLidaA aarwr TRA1_LACHE : 29- 36: kelqq Avnd-Lle-A eltaf TRA1_MYCBO : 39- 47: aalmg AeadaLcg-A gyrer TRA1_MYCBO : 234- 241: lvtsd Ahag-Lva-A igatl TRA1_MYCBO : 241- 249: aglva AigatLpa-A awqrc TRA1_MYCBO : 241- 250: aglva AigatLpaaA wqrcr TRA1_MYCBO : 300- 309: drvld AltdkLpavA ehldt TRA1_MYCBO : 307- 315: tdklp AvaehLdt-A rtdll TRA1_MYCBO : 315- 324: ehldt ArtdlLaftA fpkqi TRA1_MYCBO : 360- 368: ifpdr AsiirLvg-A vlaeq TRA2_THIFE : 4- 13: mqe AlsilLgdeA kglsp TRA2_THIFE : 265- 274: wigiy ApekvLqlfA gvkfi TRA3_RHIME : 181- 190: fvrnk AvyvaLavlA dgske TRA3_RHIME : 340- 348: tnaie AlnskLrr-A vrsrg TRA5_LACLA : 29- 36: tslet Amnd-Llq-A elsaf TRA6_BURCE : 28- 36: dgage Alri-LvneA akier TRA6_BURCE : 290- 297: pdrte Aerl-Lka-A ltlwc TRA6_STAAU : 234- 241: lvisd Ahkg-Lvs-A irksf TRA_CORDI : 327- 334: tgwkq Ainq-Lav-A ypdrf M 13: 11.5102 10( 9) L-x(4,5)-K-x(0,1)-R Occurences: 10(9) TRA0_MYCSM : 113- 119: eswad Llrdc-K-R rgmta TRA0_MYCSM : 113- 120: eswad Llrdc-KrR gmtap TRA1_LACHE : 210- 217: evwte Llqsm-KsR gleqv TRA1_MYCBO : 92- 98: yfpdw Llqrr-K-R aeral TRA2_THIFE : 253- 259: lgfkm Lqqae-K-R wigiy TRA3_RHIME : 261- 269: lirhs LefvsyKdR rtvvp TRA5_LACLA : 257- 263: hisrn Laskv-K-R adrav TRA5_LACLA : 336- 342: nlies Lnkei-K-R qtkkk TRA6_BURCE : 165- 173: tpylf LdaryeKvR legri TRA6_STAAU : 289- 296: ftdin Larea-KnR lihdy TRA_CORDI : 86- 94: ypvif LdalrvKiR dghrv N 14: 11.5102 14( 9) S-x(2,3)-L-x(3,4)-L Occurences: 14(9) TRA0_MYCSM : 2- 10: m Sev-LpllyL hglss TRA1_LACHE : 216- 224: lqsmk Srg-LeqveL flsdg TRA1_MYCBO : 21- 28: qlaqa Spd-Llrg-L lstfi TRA1_MYCBO : 21- 29: qlaqa SpdlLrgl-L stfia TRA1_MYCBO : 21- 29: qlaqa Spd-LlrglL stfia TRA1_MYCBO : 361- 370: fpdra SiirLvgavL aeqhd TRA2_THIFE : 244- 253: cvsrs SflgLgfkmL qqaek TRA3_RHIME : 35- 43: lkkal SeriLnae-L ddhld TRA5_LACLA : 158- 167: leany SvlfLdgtyL plrrg TRA5_LACLA : 206- 214: nenna SwstLldk-L qnqgi TRA5_LACLA : 329- 336: whsiy Stn-Lies-L nkeik TRA6_BURCE : 361- 369: fpnpd SclrLvsa-L laeld TRA6_BURCE : 361- 370: fpnpd SclrLvsalL aeldd TRA6_STAAU : 330- 339: tvqgn ShnrLkstnL ierln TRA6_STAAU : 336- 343: hnrlk Stn-Lier-L nqevr TRA6_STAAU : 362- 371: fpnqt SanrLigavL mdlhd TRA_CORDI : 259- 267: lyttn SiesLnae-L rkatr O 15: 11.5102 14( 9) E-x(0,2)-L-x-A Occurences: 14(9) TRA0_MYCSM : 95- 98: adgrk E--LvA itdgy TRA1_LACHE : 35- 40: vndll EaeLtA flgyn TRA1_LACHE : 37- 40: dllea E--LtA flgyn TRA1_MYCBO : 10- 14: hlidt Eq-LlA dqlaq TRA2_THIFE : 201- 204: ekdra E--LlA fydfp TRA3_RHIME : 36- 41: kkals EriLnA elddh TRA3_RHIME : 286- 291: rarda EagLkA leafe TRA5_LACLA : 37- 40: dllqa E--LsA flgye TRA5_LACLA : 150- 155: vatfh ErsLeA nysvl TRA6_BURCE : 147- 151: aakld Eg-LrA wrerp TRA6_BURCE : 216- 220: wrrfl Es-LlA rglkg TRA6_BURCE : 291- 296: drtea ErlLkA altlw TRA6_STAAU : 100- 105: ryqrn EkaLmA smlem TRA_CORDI : 261- 265: ttnsi Es-LnA elrka P 16: 11.5102 14( 9) A-x(2,3)-K-x(0,1)-R Occurences: 14(9) TRA0_MYCSM : 291- 297: lvrag AvfhKgR llerp TRA1_LACHE : 147- 151: ipkve Ayh-K-R klsdk TRA1_MYCBO : 78- 83: atidv Aip-KlR qgsyf TRA1_MYCBO : 168- 174: flaad AlvlKvR eagrv TRA2_THIFE : 193- 199: ypkav AkleKdR aella TRA3_RHIME : 166- 172: lvffd AirvKiR degfv TRA3_RHIME : 340- 346: tnaie AlnsKlR ravrs TRA3_RHIME : 373- 378: vlnna AeqwK-R aprew TRA5_LACLA : 258- 263: isrnl AskvK-R adrav TRA6_BURCE : 167- 173: ylfld AryeKvR legri TRA6_BURCE : 191- 195: avgie Asg-K-R rvlgc TRA6_BURCE : 191- 196: avgie Asg-KrR vlgce TRA6_STAAU : 290- 296: tdinl AreaKnR lihdy TRA_CORDI : 88- 94: vifld AlrvKiR dghrv TRA_CORDI : 303- 308: raaqr AkkaK-R aiecn Q 17: 11.5102 13( 9) A-x(0,1)-V-x(2,3)-L Occurences: 13(9) TRA0_MYCSM : 158- 164: wfhkq AnVlaaL pksah TRA1_LACHE : 29- 33: kelqq A-Vnd-L leael TRA1_LACHE : 29- 34: kelqq A-VndlL eaelt TRA1_LACHE : 284- 289: qanka AaVdv-L hafya TRA1_LACHE : 285- 289: ankaa A-Vdv-L hafya TRA1_MYCBO : 307- 312: tdklp A-VaehL dtart TRA2_THIFE : 19- 24: kglsp A-VlgrL kaewa TRA2_THIFE : 191- 195: akypk A-Vak-L ekdra TRA3_RHIME : 181- 186: fvrnk A-VyvaL avlad TRA3_RHIME : 228- 233: qdili AvVdg-L kgfpe TRA3_RHIME : 228- 233: qdili A-VvdgL kgfpe TRA5_LACLA : 285- 289: enlem A-Vqa-L enfia TRA6_BURCE : 101- 106: trtdq A-VnlaL aemyv TRA6_STAAU : 369- 374: nrlig A-VlmdL hdewi TRA_CORDI : 133- 139: gasfw AsVcadL anrgv R 18: 11.5102 22( 9) A-x(1,3)-A-x-L Occurences: 22(9) TRA0_MYCSM : 107- 113: gyres AeswAdL lrdck TRA0_MYCSM : 158- 164: wfhkq AnvlAaL pksah TRA1_LACHE : 36- 42: ndlle AeltAfL gynpy TRA1_MYCBO : 234- 238: lvtsd Ah--AgL vaaig TRA1_MYCBO : 240- 246: haglv AaigAtL paaaw TRA1_MYCBO : 241- 246: aglva Aig-AtL paaaw TRA1_MYCBO : 392- 396: evltr Ar--AaL tstee TRA2_THIFE : 157- 161: aqqsk Ak--AaL qeiwm TRA2_THIFE : 191- 195: akypk Av--AkL ekdra TRA3_RHIME : 185- 189: kavyv Al--AvL adgsk TRA3_RHIME : 285- 289: yrard Ae--AgL kalea TRA5_LACLA : 36- 42: ndllq AelsAfL gyepy TRA6_BURCE : 12- 17: tnple Aay-AaL lengl TRA6_BURCE : 12- 18: tnple AayaAlL engld TRA6_BURCE : 13- 17: nplea Ay--AaL lengl TRA6_BURCE : 13- 18: nplea Aya-AlL engld TRA6_BURCE : 141- 145: aqvsr Aa--AkL deglr TRA6_BURCE : 231- 237: vtlii AddhAgL kaarr TRA6_BURCE : 239- 245: haglk AarrAvL psvpw TRA6_BURCE : 240- 245: aglka Arr-AvL psvpw TRA6_BURCE : 368- 373: lrlvs All-AeL ddewm TRA6_STAAU : 310- 314: pkysk Ac--AsL ddgfe TRA_CORDI : 133- 139: gasfw AsvcAdL anrgv TRA_CORDI : 210- 214: ptedt Ar--AaL dafea S 19: 11.5102 17( 9) K-x(0,1)-A-x(1,2)-A Occurences: 17(9) TRA0_MYCSM : 187- 191: aedid K-AqiA vkafe TRA0_MYCSM : 193- 197: aqiav K-AfeA dfgak TRA0_MYCSM : 205- 208: gakyp K-Av-A kitdd TRA1_LACHE : 234- 238: gvvgm KtAl-A ktypq TRA1_LACHE : 282- 285: hqqan K-Aa-A vdvlh TRA1_MYCBO : 97- 102: llqrr KrAerA ltsvv TRA2_THIFE : 25- 29: vlgrl K-AewA qeyah TRA2_THIFE : 156- 159: kaqqs K-Ak-A alqei TRA2_THIFE : 156- 160: kaqqs K-AkaA lqeiw TRA2_THIFE : 190- 193: qakyp K-Av-A klekd TRA3_RHIME : 290- 294: aeagl K-AleA feegy TRA5_LACLA : 262- 267: laskv KrAdrA vileq TRA6_BURCE : 238- 243: dhagl KaArrA vlpsv TRA6_BURCE : 307- 312: ckehp KlAewA etaip TRA6_STAAU : 101- 105: yqrne K-AlmA smlem TRA6_STAAU : 309- 312: qpkys K-Ac-A slddg TRA_CORDI : 304- 309: aaqra KkAkrA iecng TRA_CORDI : 305- 309: aqrak K-AkrA iecng T 20: 11.5102 15( 9) A-x(0,1)-K-x(3,4)-A Occurences: 15(9) TRA0_MYCSM : 175- 182: psala AiKeiynA edidk TRA0_MYCSM : 191- 197: dkaqi AvKafe-A dfgak TRA0_MYCSM : 201- 206: eadfg A-Kypk-A vakit TRA0_MYCSM : 264- 270: aglam AyKlid-A aaarw TRA0_MYCSM : 264- 271: aglam AyKlidaA aarwr TRA1_LACHE : 238- 244: mktal A-KtypqA hfqrc TRA1_MYCBO : 141- 147: qvsim A-KeldeA veafr TRA2_THIFE : 13- 19: llgde A-KglspA vlgrl TRA2_THIFE : 186- 191: vrnyq A-Kypk-A vakle TRA3_RHIME : 386- 391: rewve A-Ktqf-A vifge TRA5_LACLA : 258- 264: isrnl AsKvkr-A dravi TRA6_BURCE : 36- 43: ilvne AaKiersA flgar TRA6_BURCE : 37- 43: lvnea A-KiersA flgar TRA6_BURCE : 270- 276: ttrqe ArKtva-A qmrai TRA6_STAAU : 234- 241: lvisd AhKglvsA irksf TRA_CORDI : 303- 309: raaqr AkKakr-A iecng TRA_CORDI : 303- 309: raaqr A-KkakrA iecng Number of patterns evaluated by Pratt:4141 Total running time: 3 seconds