------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file TRANSPOSASE_IS30 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TRANSPOSASE_IS30.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TRA1_STRSL 342 TRA4_BACFR 326 TRA8_ALCEU 339 TRA8_ECOLI 383 Pratt run started at Thu Feb 6 21:28:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 41.7005 4( 4) R-G-x(2)-E-N-x-N-G-L-x-R-x(3)-P-K 2: 41.2005 5( 4) S-x(3,4)-G-x(2)-E-N-x-N-G-L-x-R-x(3)-P-K 3: 37.5305 4( 4) G-x(2)-E-N-x-N-G-L-x-R-x(3)-P-K 4: 35.5305 4( 4) R-G-x(1,3)-N-x-N-x(0,2)-G-L-x-R-x(3)-P-K 5: 33.3604 4( 4) E-N-x-N-G-L-x-R-x(3)-P-K 6: 31.3604 4( 4) G-x(1,3)-N-x-N-x(0,2)-G-L-x-R-x(3)-P-K 7: 29.1904 4( 4) N-x-N-G-L-x-R-x(3)-P-K 8: 28.1904 7( 4) N-x-N-x(0,2)-G-L-x-R-x(3)-P-K 9: 28.1904 7( 4) N-x(1,3)-N-G-L-x-R-x(3)-P-K 10: 27.1904 6( 4) T-x(0,2)-N-x(0,2)-G-L-x-R-x(3)-P-K 11: 25.0203 4( 4) N-G-L-x-R-x(3)-P-K 12: 20.8503 4( 4) G-L-x-R-x(3)-P-K 13: 20.8503 4( 4) S-T-x(2)-R-E-x(2)-R 14: 19.8503 6( 4) R-x(1,3)-G-x(2)-E-x-D-x(3)-G 15: 19.3503 5( 4) S-x(2,3)-R-G-x(1,3)-N-x-N 16: 19.3503 4( 4) C-x(3,4)-S-x(2,4)-R-x(3)-E-x(4)-L 17: 16.6802 4( 4) N-x-R-P-R 18: 16.6802 4( 4) L-x-R-x(3)-P-K 19: 16.6802 4( 4) T-x-D-x-G-x-E 20: 16.6802 4( 4) G-x(2)-E-x-D-x(3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 115.7147 4( 4) R-G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] B 2: 111.5447 4( 4) G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] C 3: 106.0644 5( 4) S-x(3,4)-G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR] D 4: 103.6996 4( 4) E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] E 5: 103.1241 4( 4) R-G-x(1,3)-N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST] F 6: 102.1752 4( 4) G-x(1,3)-N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] G 7: 101.7046 6( 4) N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] H 8: 99.5295 4( 4) N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] I 9: 98.5295 7( 4) N-x(1,3)-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] J 10: 95.3595 4( 4) N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] K 11: 94.8301 6( 4) T-x(0,2)-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] L 12: 93.8435 4( 4) G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] M 13: 86.3868 4( 4) L-x-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] N 14: 55.1306 4( 4) C-x(3,4)-S-x(2,4)-R-x-[AT]-x-E-[AN]-[ST]-x(2)-L-x(2)-[DQ]-x-[FILV]-[PS]-[DK]-x(4)-[AS]-x(2)-[DST]-[ANQ]-x-[EQR]-x-[DK] O 15: 39.7368 4( 4) S-T-[ILV]-x-R-E-[ILV]-x-R-[GN]-x(3)-[QR]-x(4)-[ANSV]-x-[AES]-x-[AGNQ] P 16: 37.1022 4( 4) N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] Q 17: 33.4349 4( 4) T-x-D-[NQR]-G-x-E-[FLM]-[AS]-x(3)-[EK]-[FIL]-[AEST] R 18: 29.5611 6( 4) R-x(1,3)-G-[DH]-x-E-[GI]-D-x-[IV]-x-G S 19: 26.3910 4( 4) G-[DH]-x-E-[GI]-D-x-[IV]-x-G T 20: 25.2016 5( 4) S-x(2,3)-R-G-x(1,3)-N-[ET]-N-x(2)-[GIL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 115.7147 4( 4) R-G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] Occurences: 4(4) TRA1_STRSL : 284- 332: yssye RGTNENfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSA kklfe TRA4_BACFR : 261- 309: yhswe RGANENtNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTP nekfk TRA8_ALCEU : 273- 321: hspwq RGTCENtNGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSP lqvla TRA8_ECOLI : 323- 371: qspwq RGTNENtNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie B 2: 111.5447 4( 4) G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] Occurences: 4(4) TRA1_STRSL : 285- 332: ssyer GTNENfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSA kklfe TRA4_BACFR : 262- 309: hswer GANENtNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTP nekfk TRA8_ALCEU : 274- 321: spwqr GTCENtNGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSP lqvla TRA8_ECOLI : 324- 371: spwqr GTNENtNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie C 3: 106.0644 5( 4) S-x(3,4)-G-[AT]-[CN]-E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR] Occurences: 5(4) TRA1_STRSL : 280- 325: fahay SsyerGTNENfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRR ihgyq TRA1_STRSL : 281- 325: ahays Syer-GTNENfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRR ihgyq TRA4_BACFR : 258- 302: ckpyh Swer-GANENtNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRK rlgyl TRA8_ALCEU : 269- 314: fcdph SpwqrGTCENtNGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRK tlnwh TRA8_ECOLI : 319- 364: fcdpq SpwqrGTNENtNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRK tlkfk D 4: 103.6996 4( 4) E-N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] Occurences: 4(4) TRA1_STRSL : 288- 336: ergtn ENfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA4_BACFR : 265- 313: ergan ENtNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA8_ALCEU : 277- 325: qrgtc ENtNGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvL aqvla TRA8_ECOLI : 327- 375: qrgtn ENtNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva E 5: 103.1241 4( 4) R-G-x(1,3)-N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST] Occurences: 4(4) TRA1_STRSL : 284- 331: yssye RGt--NENfnGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqS akklf TRA4_BACFR : 261- 308: yhswe RGaneNTN--GLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlT pnekf TRA4_BACFR : 261- 308: yhswe RGa--NENtnGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlT pnekf TRA8_ALCEU : 273- 320: hspwq RGtceNTN--GLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhS plqvl TRA8_ECOLI : 323- 370: qspwq RGtneNTN--GLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkT pkeii TRA8_ECOLI : 323- 370: qspwq RGt--NENtnGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkT pkeii F 6: 102.1752 4( 4) G-x(1,3)-N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] Occurences: 4(4) TRA1_STRSL : 285- 332: ssyer Gt--NENfnGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSA kklfe TRA4_BACFR : 262- 309: hswer GaneNTN--GLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTP nekfk TRA4_BACFR : 262- 309: hswer Ga--NENtnGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTP nekfk TRA8_ALCEU : 274- 321: spwqr GtceNTN--GLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSP lqvla TRA8_ECOLI : 324- 371: spwqr GtneNTN--GLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie TRA8_ECOLI : 324- 371: spwqr Gt--NENtnGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie G 7: 101.7046 6( 4) N-[ET]-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] Occurences: 6(4) TRA1_STRSL : 287- 336: yergt NENfnGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA4_BACFR : 264- 313: werga NENtnGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA4_BACFR : 266- 313: rgane NTN--GLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA8_ALCEU : 278- 325: rgtce NTN--GLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvL aqvla TRA8_ECOLI : 326- 375: wqrgt NENtnGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva TRA8_ECOLI : 328- 375: rgtne NTN--GLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva H 8: 99.5295 4( 4) N-x-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] Occurences: 4(4) TRA1_STRSL : 289- 336: rgtne NfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA4_BACFR : 266- 313: rgane NtNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA8_ALCEU : 278- 325: rgtce NtNGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvL aqvla TRA8_ECOLI : 328- 375: rgtne NtNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva I 9: 98.5295 7( 4) N-x(1,3)-N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] Occurences: 7(4) TRA1_STRSL : 287- 336: yergt NenfNGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA1_STRSL : 289- 336: rgtne Nf--NGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA4_BACFR : 264- 313: werga NentNGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA4_BACFR : 266- 313: rgane Nt--NGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA8_ALCEU : 278- 325: rgtce Nt--NGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvL aqvla TRA8_ECOLI : 326- 375: wqrgt NentNGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva TRA8_ECOLI : 328- 375: rgtne Nt--NGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva J 10: 95.3595 4( 4) N-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL] Occurences: 4(4) TRA1_STRSL : 291- 336: tnenf NGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklF eltqt TRA4_BACFR : 268- 313: anent NGLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekF kqiin TRA8_ALCEU : 280- 325: tcent NGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvL aqvla TRA8_ECOLI : 330- 375: tnent NGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiI ergva K 11: 94.8301 6( 4) T-x(0,2)-N-x(0,2)-G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP] Occurences: 6(4) TRA1_STRSL : 286- 332: syerg TneNfnGLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSA kklfe TRA4_BACFR : 267- 309: ganen T--N--GLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTP nekfk TRA8_ALCEU : 275- 321: pwqrg TceNtnGLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSP lqvla TRA8_ALCEU : 279- 321: gtcen T--N--GLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSP lqvla TRA8_ECOLI : 325- 371: pwqrg TneNtnGLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie TRA8_ECOLI : 329- 371: gtnen T--N--GLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTP keiie L 12: 93.8435 4( 4) G-L-[IL]-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] Occurences: 4(4) TRA1_STRSL : 292- 341: nenfn GLLREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklFeltqT a TRA4_BACFR : 269- 318: nentn GLIRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekFkqiiN qnsva TRA8_ALCEU : 281- 330: centn GLLRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvLaqvlA nptdr TRA8_ECOLI : 331- 380: nentn GLIRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiIergvA ltd M 13: 86.3868 4( 4) L-x-R-[EQ]-[FY]-[FIL]-P-K-x(2)-[CDS]-[FL]-x(3)-[NST]-[NQ]-x(2)-[IL]-[DEK]-x(2)-[AET]-x(2)-[IL]-N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] Occurences: 4(4) TRA1_STRSL : 293- 341: enfng LlREFIPKgcSLkelNQnlLEdyTkaINERPRRihgYqSAkklFeltqT a TRA4_BACFR : 270- 318: entng LiRQYIPKgkDFsevTNkqIKwiEnkLNNRPRKrlgYlTPnekFkqiiN qnsva TRA8_ALCEU : 282- 330: entng LlRQYLPKgtDLsvySQeeLDaiAdsLNGRPRKtlnWhSPlqvLaqvlA nptdr TRA8_ECOLI : 332- 380: entng LiRQYFPKktCLaqyTQheLDlvAaqLNNRPRKtlkFkTPkeiIergvA ltd N 14: 55.1306 4( 4) C-x(3,4)-S-x(2,4)-R-x-[AT]-x-E-[AN]-[ST]-x(2)-L-x(2)-[DQ]-x-[FILV]-[PS]-[DK]-x(4)-[AS]-x(2)-[DST]-[ANQ]-x-[EQR]-x-[DK] Occurences: 4(4) TRA1_STRSL : 76- 114: lptll Crcc-SitviRhArEASyyLklDsVSDdfmrAftDAmReK prvhs TRA4_BACFR : 253- 290: ikfyf CkpyhSwe--RgAnENTngLirQyIPKgkdfSevTNkQiK wienk TRA8_ALCEU : 265- 302: vrvyf Cdph-Spwq-RgTcENTngLlrQyLPKgtdlSvySQeElD aiads TRA8_ECOLI : 315- 352: vkvyf Cdpq-Spwq-RgTnENTngLirQyFPKktclAqyTQhElD lvaaq O 15: 39.7368 4( 4) S-T-[ILV]-x-R-E-[ILV]-x-R-[GN]-x(3)-[QR]-x(4)-[ANSV]-x-[AES]-x-[AGNQ] Occurences: 4(4) TRA1_STRSL : 47- 69: lgrnr STItREInRGsitQvkkvNgAkG llptl TRA4_BACFR : 35- 57: igvdk STVyREIkRNcdaRsgsySmElA qrkad TRA8_ALCEU : 39- 61: lgrap STLmRELrRNataRggygAmSaQ acrtq TRA8_ECOLI : 89- 111: lnrsp STIsREVqRNrgrRyykaVdAnN ranrm P 16: 37.1022 4( 4) N-[EGN]-R-P-R-[KR]-x(3)-[FWY]-x-[ST]-[AP]-x(3)-[FIL]-x(4)-[ANT] Occurences: 4(4) TRA1_STRSL : 320- 341: ytkai NERPRRihgYqSAkklFeltqT a TRA4_BACFR : 297- 318: ienkl NNRPRKrlgYlTPnekFkqiiN qnsva TRA8_ALCEU : 309- 330: iadsl NGRPRKtlnWhSPlqvLaqvlA nptdr TRA8_ECOLI : 359- 380: vaaql NNRPRKtlkFkTPkeiIergvA ltd Q 17: 33.4349 4( 4) T-x-D-[NQR]-G-x-E-[FLM]-[AS]-x(3)-[EK]-[FIL]-[AEST] Occurences: 4(4) TRA1_STRSL : 255- 269: piksi TaDNGnEFSslsKIE gldvy TRA4_BACFR : 229- 243: lihti TaDNGkEFAkheEIA qklei TRA8_ALCEU : 241- 255: lrqtl TyDQGrEMArhaELS aatgv TRA8_ECOLI : 291- 305: lrksl TwDRGmELArhlEFT vstgv R 18: 29.5611 6( 4) R-x(1,3)-G-[DH]-x-E-[GI]-D-x-[IV]-x-G Occurences: 6(4) TRA1_STRSL : 192- 205: eeinn RsrfGDwEIDsVlG gktig TRA1_STRSL : 194- 205: innrs Rf--GDwEIDsVlG gktig TRA4_BACFR : 168- 179: velke Rf--GDlEIDtIiG knhkg TRA8_ALCEU : 177- 190: pevnd RlmpGHwEGDlIkG agnqs TRA8_ECOLI : 228- 241: rnidn RrslGHwEGDlVsG tknsh TRA8_ECOLI : 229- 241: nidnr Rsl-GHwEGDlVsG tknsh S 19: 26.3910 4( 4) G-[DH]-x-E-[GI]-D-x-[IV]-x-G Occurences: 4(4) TRA1_STRSL : 196- 205: nrsrf GDwEIDsVlG gktig TRA4_BACFR : 170- 179: lkerf GDlEIDtIiG knhkg TRA8_ALCEU : 181- 190: drlmp GHwEGDlIkG agnqs TRA8_ECOLI : 232- 241: nrrsl GHwEGDlVsG tknsh T 20: 25.2016 5( 4) S-x(2,3)-R-G-x(1,3)-N-[ET]-N-x(2)-[GIL] Occurences: 5(4) TRA1_STRSL : 280- 292: fahay SsyeRGt--NENfnG llref TRA1_STRSL : 281- 292: ahays Sye-RGt--NENfnG llref TRA4_BACFR : 258- 269: ckpyh Swe-RGa--NENtnG lirqy TRA4_BACFR : 258- 271: ckpyh Swe-RGaneNTNglI rqyip TRA8_ALCEU : 269- 283: fcdph SpwqRGtceNTNglL rqylp TRA8_ECOLI : 319- 331: fcdpq SpwqRGt--NENtnG lirqy TRA8_ECOLI : 319- 333: fcdpq SpwqRGtneNTNglI rqyfp Number of patterns evaluated by Pratt:9779 Total running time: 3 seconds