------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file TRANSGLYCOSYLASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TRANSGLYCOSYLASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SLT_ECOLI 645 SLT_ENTCL 42 SLT_HAEIN 593 SLT_SALTY 54 TBTA_ALTSM 207 VIVD_BPT7 1318 VP07_BPPRD 264 YAFG_ECOLI 135 YFHD_ECOLI 472 YFHD_HAEIN 462 Pratt run started at Thu Feb 6 21:28:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 15( 10) L-x(3,4)-A-x(0,1)-Y 2: 11.0102 11( 10) V-x(0,1)-K-x(0,2)-N 3: 10.5102 22( 10) A-x(2,4)-D-x(0,2)-A 4: 10.5102 13( 10) Y-x(0,2)-D-x(1,3)-R 5: 10.5102 38( 10) L-x(0,2)-A-x(0,2)-A 6: 10.5102 17( 10) V-x(0,2)-A-x(1,3)-D 7: 10.5102 15( 10) E-x(2,4)-P-x(1,3)-S 8: 8.3401 28( 10) G-x(4)-L 9: 8.3401 33( 10) A-Y 10: 8.3401 61( 10) A-x(2)-A 11: 8.3401 27( 10) V-x-A 12: 8.3401 25( 10) N-x(2)-A 13: 8.3401 27( 10) K-x(3)-A 14: 8.3401 29( 10) G-x-V 15: 8.3401 20( 10) E-S 16: 7.8401 43( 10) D-x(0,1)-A 17: 7.8401 48( 10) S-x(1,2)-A 18: 7.8401 56( 10) S-x(0,1)-A 19: 7.8401 27( 10) L-x(0,1)-M 20: 7.8401 83( 10) L-x(3,4)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 17.3377 10( 10) E-S-x(3)-[APS]-x-[AT]-x-[GS] B 2: 11.5102 15( 10) L-x(3,4)-A-x(0,1)-Y C 3: 11.0102 11( 10) V-x(0,1)-K-x(0,2)-N D 4: 10.9700 23( 10) A-x-[ADV]-A E 5: 10.5540 20( 10) A-Y-[DNQS] F 6: 10.5102 22( 10) A-x(2,4)-D-x(0,2)-A G 7: 10.5102 13( 10) Y-x(0,2)-D-x(1,3)-R H 8: 10.5102 38( 10) L-x(0,2)-A-x(0,2)-A I 9: 10.5102 17( 10) V-x(0,2)-A-x(1,3)-D J 10: 10.5102 15( 10) E-x(2,4)-P-x(1,3)-S K 11: 10.2561 16( 10) K-x-[ADGNV]-x-A L 12: 9.5786 20( 10) G-x(4)-L-x-[ADEGNQST] M 13: 8.3401 27( 10) V-x-A N 14: 8.3401 25( 10) N-x(2)-A O 15: 8.3401 29( 10) G-x-V P 16: 7.8401 43( 10) D-x(0,1)-A Q 17: 7.8401 48( 10) S-x(1,2)-A R 18: 7.8401 56( 10) S-x(0,1)-A S 19: 7.8401 27( 10) L-x(0,1)-M T 20: 7.8401 83( 10) L-x(3,4)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 17.3377 10( 10) E-S-x(3)-[APS]-x-[AT]-x-[GS] Occurences: 10(10) SLT_ECOLI : 604- 613: avafv ESipfSeTrG yvknv SLT_ENTCL : 1- 10: ESipfSeTrG yvknv SLT_HAEIN : 453- 462: aiarq ESawnPmAqS sanar SLT_SALTY : 13- 22: avafv ESipfSeTrG yvknv TBTA_ALTSM : 49- 58: lmpli ESdfnAsAyS hkhas VIVD_BPT7 : 37- 46: kvawt ESrfvPtAkS ktgpl VP07_BPPRD : 31- 40: gvvqt ESsgnPrTtS gvgam YAFG_ECOLI : 24- 33: llpiv ESafdPhAtS ganaa YFHD_ECOLI : 268- 277: aiayq EShwdAqAtS ptgvr YFHD_HAEIN : 292- 301: avayq EShwnPdAtS ptgvr B 2: 11.5102 15( 10) L-x(3,4)-A-x(0,1)-Y Occurences: 15(10) SLT_ECOLI : 619- 624: yvknv Layd-A-Y yryfm SLT_ECOLI : 619- 625: yvknv Layd-AyY ryfmg SLT_ENTCL : 16- 21: yvknv Layd-A-Y yrhfm SLT_ENTCL : 16- 22: yvknv Layd-AyY rhfmg SLT_HAEIN : 422- 428: wdyls LrlpnA-Y seyfn SLT_HAEIN : 521- 526: pnnri Liaa-A-Y nagan SLT_SALTY : 28- 33: yvknv Layd-A-Y yryfm SLT_SALTY : 28- 34: yvknv Layd-AyY ryfmg TBTA_ALTSM : 68- 75: sglwq LtpaiAkY fkvqi VIVD_BPT7 : 102- 108: fdgde LkaalA-Y nqgeg VP07_BPPRD : 58- 64: ataks LgvtnA-Y dptqn YAFG_ECOLI : 88- 94: fdgdw LltvaA-Y nsgeg YAFG_ECOLI : 88- 94: fdgdw Lltv-AaY nsgeg YAFG_ECOLI : 89- 94: dgdwl Ltva-A-Y nsgeg YFHD_ECOLI : 24- 31: gldye LakqfAdY lgvkl YFHD_ECOLI : 260- 266: eidwr LlaaiA-Y qeshw YFHD_ECOLI : 261- 266: idwrl Laai-A-Y qeshw YFHD_HAEIN : 284- 290: eldwr LlaavA-Y qeshw YFHD_HAEIN : 285- 290: ldwrl Laav-A-Y qeshw C 3: 11.0102 11( 10) V-x(0,1)-K-x(0,2)-N Occurences: 11(10) SLT_ECOLI : 615- 617: etrgy V-K--N vlayd SLT_ENTCL : 12- 14: etrgy V-K--N vlayd SLT_HAEIN : 166- 171: kennr VqKeqN qvenp SLT_SALTY : 24- 26: etrgy V-K--N vlayd TBTA_ALTSM : 33- 37: yivte VeKr-N lpiel VIVD_BPT7 : 285- 287: kirte V-K--N payin VP07_BPPRD : 114- 117: sypgk VmK--N inllf VP07_BPPRD : 114- 119: sypgk VmKniN llfgn YAFG_ECOLI : 8- 12: wiagq VkKr-N mpmel YAFG_ECOLI : 8- 12: wiagq V-KkrN mpmel YFHD_ECOLI : 70- 72: ynser V-K--N yqpgp YFHD_HAEIN : 389- 392: dnwfd VkK--N lplla YFHD_HAEIN : 389- 392: dnwfd V-Kk-N lplla YFHD_HAEIN : 451- 453: nnesa V-K--N leeik D 4: 10.9700 23( 10) A-x-[ADV]-A Occurences: 23(10) SLT_ECOLI : 245- 248: ftrqm AaVA fasva SLT_ECOLI : 250- 253: aavaf AsVA rqdae SLT_ECOLI : 620- 623: vknvl AyDA yyryf SLT_ENTCL : 17- 20: vknvl AyDA yyrhf SLT_HAEIN : 407- 410: qwfel AvDA sivak SLT_SALTY : 5- 8: nsag AiDA vafve SLT_SALTY : 29- 32: vknvl AyDA yyryf TBTA_ALTSM : 115- 118: gdwyh AiAA lnlge VIVD_BPT7 : 19- 22: glfqk AaDA ngvsy VIVD_BPT7 : 388- 391: gdady AgAA lggfv VIVD_BPT7 : 407- 410: saisd AvAA glkrs VIVD_BPT7 : 1133- 1136: yknnr AiDA alsii VIVD_BPT7 : 1152- 1155: aggfy AmAA hvkay VIVD_BPT7 : 1181- 1184: dptmi AhAA lsrss VP07_BPPRD : 192- 195: vdkhv AnAA gsayd VP07_BPPRD : 198- 201: naags AyDA vtdav VP07_BPPRD : 225- 228: gvvii AaVA ivvvg VP07_BPPRD : 256- 259: pagka AgAA akala YAFG_ECOLI : 35- 38: hatsg AnAA giwqi YFHD_ECOLI : 237- 240: rtflr AvDA vlpql YFHD_ECOLI : 334- 337: eriwf AlAA ynmgy YFHD_HAEIN : 286- 289: dwrll AaVA yqesh YFHD_HAEIN : 358- 361: eriwf AlVA ynigl E 5: 10.5540 20( 10) A-Y-[DNQS] Occurences: 20(10) SLT_ECOLI : 479- 481: erfpl AYN dlfkr SLT_ECOLI : 578- 580: ifssa AYN aglgr SLT_ECOLI : 620- 622: vknvl AYD ayyry SLT_ENTCL : 17- 19: vknvl AYD ayyrh SLT_HAEIN : 337- 339: tqlkq AYQ lnvpi SLT_HAEIN : 427- 429: lrlpn AYS eyfna SLT_HAEIN : 525- 527: iliaa AYN aganr SLT_HAEIN : 567- 569: vqnvv AYD fyyqi SLT_SALTY : 29- 31: vknvl AYD ayyry TBTA_ALTSM : 56- 58: dfnas AYS hkhas VIVD_BPT7 : 107- 109: lkaal AYN qgegr VIVD_BPT7 : 122- 124: npqle AYS kgdfa VIVD_BPT7 : 802- 804: frimp AYD rrvng VP07_BPPRD : 63- 65: lgvtn AYD ptqni VP07_BPPRD : 198- 200: naags AYD avtda YAFG_ECOLI : 93- 95: lltva AYN sgegr YFHD_ECOLI : 265- 267: llaai AYQ eshwd YFHD_ECOLI : 337- 339: wfala AYN mgyah YFHD_HAEIN : 289- 291: llaav AYQ eshwn YFHD_HAEIN : 361- 363: wfalv AYN iglgh F 6: 10.5102 22( 10) A-x(2,4)-D-x(0,2)-A Occurences: 22(10) SLT_ECOLI : 175- 183: fsvwr AsgkqDplA yleri SLT_ECOLI : 253- 257: afasv Arq--D--A enarl SLT_ECOLI : 299- 305: vtdeq AkwrdD--A imrsq SLT_ECOLI : 299- 305: vtdeq Akwr-Dd-A imrsq SLT_ECOLI : 398- 405: lkidk ApqnvDs-A ltqgp SLT_ECOLI : 594- 599: wlgns Agri-D--A vafve SLT_ECOLI : 594- 601: wlgns Agri-DavA fvesi SLT_ENTCL : 31- 36: mgekd Alms-D--A ewqrr SLT_HAEIN : 155- 160: eqqts Ats--Dn-A kennr SLT_SALTY : 3- 8: ns Agai-D--A vafve SLT_SALTY : 3- 10: ns Agai-DavA fvesi TBTA_ALTSM : 181- 188: nspti AvlpvDc-A vildn VIVD_BPT7 : 122- 129: npqle AyskgDf-A sisee VIVD_BPT7 : 381- 385: lrtsv Agg--D--A dyaga VIVD_BPT7 : 381- 388: lrtsv AggdaDy-A gaalg VIVD_BPT7 : 403- 407: gagms Ais--D--A vaagl VIVD_BPT7 : 403- 409: gagms Ais--DavA aglkr VIVD_BPT7 : 576- 580: ndlyk Ams--D--A mkdpe VIVD_BPT7 : 1062- 1069: vkdkq Afsm-DprA mdlwr VIVD_BPT7 : 1076- 1083: dlwrl AdkvaDe-A mlrph VP07_BPPRD : 146- 154: aqemt AvnisDytA pdltg VP07_BPPRD : 195- 201: hvana AgsayD--A vtdav VP07_BPPRD : 201- 205: gsayd Avt--D--A vsapv YAFG_ECOLI : 61- 67: trnyd Arr--DvvA sttaa YFHD_ECOLI : 343- 348: ynmgy Ahml-D--A ralta YFHD_ECOLI : 343- 350: ynmgy Ahml-DarA ltakt YFHD_HAEIN : 180- 186: ipyvi Ansi-Di-A aiqqi YFHD_HAEIN : 180- 187: ipyvi Ansi-DiaA iqqik YFHD_HAEIN : 198- 205: pelai AfditDe-A nvhwy G 7: 10.5102 13( 10) Y-x(0,2)-D-x(1,3)-R Occurences: 13(10) SLT_ECOLI : 480- 486: rfpla Yn-DlfkR ytsgk SLT_ECOLI : 621- 626: knvla Y--DayyR yfmgd SLT_ENTCL : 18- 23: knvla Y--DayyR hfmge SLT_HAEIN : 94- 99: gyplq Y--DllaR fwetk SLT_SALTY : 30- 35: knvla Y--DayyR yfmgd TBTA_ALTSM : 84- 87: qispw Y--Dg--R qdvid VIVD_BPT7 : 27- 31: angvs Y--Dll-R kvawt VIVD_BPT7 : 803- 806: rimpa Y--Dr--R vngdi VIVD_BPT7 : 995- 1001: ngttn YllDaa-R qgmlg VP07_BPPRD : 17- 22: aasaq YnlDp--R lvagv YAFG_ECOLI : 59- 62: kqtrn Y--Da--R rdvva YAFG_ECOLI : 59- 63: kqtrn Y--Dar-R dvvas YFHD_ECOLI : 228- 232: gddfd Yv-Dt--R tflra YFHD_HAEIN : 252- 256: isqfd Yv-Dt--R symna H 8: 10.5102 38( 10) L-x(0,2)-A-x(0,2)-A Occurences: 38(10) SLT_ECOLI : 11- 14: qvtwr Ll-A--A gvcll SLT_ECOLI : 12- 14: vtwrl L--A--A gvcll SLT_ECOLI : 190- 194: lerir L--AmkA gntgl SLT_ECOLI : 267- 270: lmips L--Aq-A qqlne SLT_ECOLI : 446- 450: teqaq L--AryA fnnqw SLT_ECOLI : 619- 623: yvknv L--AydA yyryf SLT_ENTCL : 16- 20: yvknv L--AydA yyrhf SLT_HAEIN : 15- 19: cifta Ls-Af-A dspnt SLT_HAEIN : 329- 331: gfypm L--A--A tqlkq SLT_HAEIN : 406- 410: qqwfe L--AvdA sivak SLT_HAEIN : 521- 524: pnnri Li-A--A aynag SLT_HAEIN : 521- 525: pnnri LiaA--A ynaga SLT_HAEIN : 521- 525: pnnri Li-Aa-A ynaga SLT_SALTY : 28- 32: yvknv L--AydA yyryf TBTA_ALTSM : 68- 73: sglwq LtpAi-A kyfkv VIVD_BPT7 : 81- 85: rlnpe L--AinA aakql VIVD_BPT7 : 102- 105: fdgde Lk-A--A laynq VIVD_BPT7 : 102- 107: fdgde LkaAl-A ynqge VIVD_BPT7 : 102- 107: fdgde Lk-AalA ynqge VIVD_BPT7 : 829- 833: lkdei L--AlkA kaegd VIVD_BPT7 : 831- 835: deila Lk-Ak-A egdgk VIVD_BPT7 : 979- 981: ystqe L--A--A rspwt VIVD_BPT7 : 996- 1000: gttny LldA--A rqgml VIVD_BPT7 : 997- 1000: ttnyl Ld-A--A rqgml VIVD_BPT7 : 1191- 1196: srssq Lg-AplA mvdlv VIVD_BPT7 : 1262- 1266: nvgat LmnA--A gvvns VP07_BPPRD : 50- 55: mglmq LmpAt-A kslgv YAFG_ECOLI : 89- 93: dgdwl LtvA--A ynsge YFHD_ECOLI : 58- 61: ngnad Ll-A--A glvyn YFHD_ECOLI : 59- 61: gnadl L--A--A glvyn YFHD_ECOLI : 171- 174: rvhpe L--Av-A lditd YFHD_ECOLI : 195- 198: dgdnt Ls-A--A lldff YFHD_ECOLI : 235- 240: dtrtf Lr-AvdA vlpql YFHD_ECOLI : 260- 263: eidwr Ll-A--A iayqe YFHD_ECOLI : 260- 265: eidwr LlaAi-A yqesh YFHD_ECOLI : 260- 265: eidwr Ll-AaiA yqesh YFHD_ECOLI : 261- 263: idwrl L--A--A iayqe YFHD_ECOLI : 261- 265: idwrl La-Ai-A yqesh YFHD_ECOLI : 261- 265: idwrl L--AaiA yqesh YFHD_ECOLI : 335- 337: riwfa L--A--A ynmgy YFHD_ECOLI : 346- 350: gyahm Ld-Ar-A ltakt YFHD_HAEIN : 50- 53: gfeye L--Ak-A fadtl YFHD_HAEIN : 50- 55: gfeye LakAf-A dtlgv YFHD_HAEIN : 84- 86: khnid L--A--A ahlly YFHD_HAEIN : 84- 87: khnid La-A--A hllyh YFHD_HAEIN : 84- 87: khnid L--Aa-A hllyh YFHD_HAEIN : 195- 198: qikpe L--Ai-A fditd YFHD_HAEIN : 284- 287: eldwr Ll-A--A vayqe YFHD_HAEIN : 284- 289: eldwr LlaAv-A yqesh YFHD_HAEIN : 284- 289: eldwr Ll-AavA yqesh YFHD_HAEIN : 285- 287: ldwrl L--A--A vayqe YFHD_HAEIN : 285- 289: ldwrl La-Av-A yqesh YFHD_HAEIN : 285- 289: ldwrl L--AavA yqesh I 9: 10.5102 17( 10) V-x(0,2)-A-x(1,3)-D Occurences: 17(10) SLT_ECOLI : 24- 28: ltvss V--Ara-D sldeq SLT_ECOLI : 24- 31: ltvss VarAdslD eqrsr SLT_ECOLI : 252- 256: vafas V--Arq-D aenar SLT_ECOLI : 618- 622: gyvkn Vl-Ay--D ayyry SLT_ENTCL : 15- 19: gyvkn Vl-Ay--D ayyrh SLT_HAEIN : 413- 418: vdasi VakAw--D ylslr SLT_HAEIN : 413- 418: vdasi V--AkawD ylslr SLT_HAEIN : 565- 569: gyvqn Vv-Ay--D fyyqi SLT_HAEIN : 566- 569: yvqnv V--Ay--D fyyqi SLT_SALTY : 27- 31: gyvkn Vl-Ay--D ayyry TBTA_ALTSM : 185- 192: iavlp VdcAvilD nrkqw VIVD_BPT7 : 380- 384: glrts V--Agg-D adyag VIVD_BPT7 : 532- 535: adirr V--Ai--D lvrsp VIVD_BPT7 : 705- 710: vsrpe Vk-Arv-D emlke VIVD_BPT7 : 845- 850: kktge Vh-Alm-D tvkil VP07_BPPRD : 60- 65: akslg VtnAy--D ptqni YAFG_ECOLI : 23- 28: vllpi VesAf--D phats YFHD_ECOLI : 173- 176: hpela V--Al--D itdeq YFHD_HAEIN : 178- 184: gkipy Vi-AnsiD iaaiq J 10: 10.5102 15( 10) E-x(2,4)-P-x(1,3)-S Occurences: 15(10) SLT_ECOLI : 505- 514: aiarq EsawnPkvkS pvgas SLT_ECOLI : 604- 609: avafv Esi--Pf--S etrgy SLT_ENTCL : 1- 6: Esi--Pf--S etrgy SLT_HAEIN : 453- 462: aiarq EsawnPmaqS sanar SLT_SALTY : 13- 18: avafv Esi--Pf--S etrgy TBTA_ALTSM : 41- 50: rnlpi ElalmPlieS dfnas VIVD_BPT7 : 37- 46: kvawt EsrfvPtakS ktgpl VIVD_BPT7 : 1082- 1091: dkvad EamlrPhkvS lqdsh VP07_BPPRD : 31- 40: gvvqt EssgnPrttS gvgam YAFG_ECOLI : 16- 25: rnmpm ElvllPiveS afdph YAFG_ECOLI : 24- 33: llpiv EsafdPhatS ganaa YFHD_ECOLI : 123- 130: lqtlk Etkf-Pel-S wkvdd YFHD_ECOLI : 438- 444: telgk Ekf--Pfl-S flsqs YFHD_HAEIN : 263- 270: ymnai Entl-Pqf-S plfek YFHD_HAEIN : 292- 301: avayq EshwnPdatS ptgvr K 11: 10.2561 16( 10) K-x-[ADGNV]-x-A Occurences: 16(10) SLT_ECOLI : 394- 398: eeyel KiDkA pqnvd SLT_ECOLI : 616- 620: trgyv KnVlA ydayy SLT_ENTCL : 13- 17: trgyv KnVlA ydayy SLT_HAEIN : 357- 361: eqlpf KqVfA mitel SLT_SALTY : 25- 29: trgyv KnVlA ydayy TBTA_ALTSM : 18- 22: qitwm KsArA epyly VIVD_BPT7 : 18- 22: dglfq KaAdA ngvsy VIVD_BPT7 : 103- 107: dgdel KaAlA ynqge VIVD_BPT7 : 125- 129: leays KgDfA sisee VIVD_BPT7 : 921- 925: tlyks KpVsA kelke VIVD_BPT7 : 1129- 1133: fydgy KnNrA idaal VP07_BPPRD : 254- 258: mipag KaAgA aakal YAFG_ECOLI : 106- 110: vmkai KtNkA rgkst YFHD_ECOLI : 136- 140: wkvdd KkGsA elmed YFHD_HAEIN : 156- 160: pqliw KrNqA ltqee YFHD_HAEIN : 406- 410: yysql KyGyA rgyea L 12: 9.5786 20( 10) G-x(4)-L-x-[ADEGNQST] Occurences: 20(10) SLT_ECOLI : 198- 205: kagnt GlvtvLaG qmpad SLT_ECOLI : 326- 333: malgt GdrrgLnT wlarl SLT_ECOLI : 630- 637: yryfm GdkptLmS atewg SLT_ENTCL : 27- 34: yrhfm GekdaLmS daewq SLT_HAEIN : 324- 331: lsker GfypmLaA tqlkq SLT_HAEIN : 468- 475: sanar GlmqlLpS taklt SLT_SALTY : 39- 46: yryfm GdkptLmS rtewg TBTA_ALTSM : 122- 129: aalnl GegrvLrA isnik VIVD_BPT7 : 297- 304: nvvtg GspenLdD likla VIVD_BPT7 : 323- 330: raaea GlgakLsA giiga VIVD_BPT7 : 350- 357: mvgvt GkgfkLiN kalvv VIVD_BPT7 : 427- 434: dnefi GpmmrLeA retar VIVD_BPT7 : 843- 850: dgkkt GevhaLmD tvkil VIVD_BPT7 : 991- 998: tklln GttnyLlD aarqg VP07_BPPRD : 72- 79: tqniy GgaalLrE nldry YAFG_ECOLI : 48- 55: iipst GrnygLkQ trnyd YFHD_ECOLI : 54- 61: ddldn GnadlLaA glvyn YFHD_ECOLI : 309- 316: eqsis GgvryLqD mmskv YFHD_ECOLI : 341- 348: aaynm GyahmLdA ralta YFHD_HAEIN : 234- 241: naeet GlldnLkE kylgh M 13: 8.3401 27( 10) V-x-A Occurences: 27(10) SLT_ECOLI : 89- 91: tvtnf VrA nptlp SLT_ECOLI : 202- 204: tglvt VlA gqmpa SLT_ECOLI : 382- 384: gfypm VaA qrige SLT_ECOLI : 460- 462: wwdls VqA tiagk SLT_ECOLI : 516- 518: kvksp VgA sglmq SLT_ECOLI : 618- 620: gyvkn VlA ydayy SLT_ENTCL : 15- 17: gyvkn VlA ydayy SLT_HAEIN : 359- 361: lpfkq VfA mitel SLT_HAEIN : 408- 410: wfela VdA sivak SLT_HAEIN : 565- 567: gyvqn VvA ydfyy SLT_SALTY : 27- 29: gyvkn VlA ydayy TBTA_ALTSM : 153- 155: qtnqs VrA krtsc VIVD_BPT7 : 362- 364: nkalv VgA esaal VIVD_BPT7 : 408- 410: aisda VaA glkrs VIVD_BPT7 : 705- 707: vsrpe VkA rvdem VIVD_BPT7 : 845- 847: kktge VhA lmdtv VIVD_BPT7 : 903- 905: ivtgn VrA lghgi VIVD_BPT7 : 923- 925: ykskp VsA kelke VIVD_BPT7 : 1157- 1159: amaah VkA yalpk VIVD_BPT7 : 1258- 1260: gfvan VgA tlmna VP07_BPPRD : 42- 44: rttsg VgA mglmq VP07_BPPRD : 206- 208: avtda VsA pveaa VP07_BPPRD : 210- 212: avsap VeA agnya YAFG_ECOLI : 65- 67: darrd VvA sttaa YAFG_ECOLI : 91- 93: dwllt VaA ynsge YFHD_ECOLI : 238- 240: tflra VdA vlpql YFHD_HAEIN : 178- 180: gkipy ViA nsidi N 14: 8.3401 25( 10) N-x(2)-A Occurences: 25(10) SLT_ECOLI : 79- 82: tddlm NqpA vtvtn SLT_ECOLI : 107- 110: qsrfv NelA rredw SLT_ECOLI : 617- 620: rgyvk NvlA ydayy SLT_ENTCL : 14- 17: rgyvk NvlA ydayy SLT_HAEIN : 372- 375: relgr NglA kqrwr SLT_HAEIN : 457- 460: qesaw NpmA qssan SLT_HAEIN : 527- 530: iaaay NagA nrvgk SLT_HAEIN : 564- 567: rgyvq NvvA ydfyy SLT_SALTY : 26- 29: rgyvk NvlA ydayy TBTA_ALTSM : 53- 56: iesdf NasA yshkh VIVD_BPT7 : 84- 87: pelai NaaA kqlag VIVD_BPT7 : 240- 243: eaels NsvA gmafr VIVD_BPT7 : 649- 652: paifg NtkA vsifp VIVD_BPT7 : 902- 905: mivtg NvrA lghgi VIVD_BPT7 : 1130- 1133: ydgyk NnrA idaal VIVD_BPT7 : 1257- 1260: agfva NvgA tlmna VP07_BPPRD : 102- 105: gtnqa NwgA ktksy VP07_BPPRD : 243- 246: fqdei NsaA mkmip YAFG_ECOLI : 58- 61: lkqtr NydA rrdvv YFHD_ECOLI : 53- 56: fddld NgnA dllaa YFHD_ECOLI : 100- 103: prtlg NltA drltv YFHD_HAEIN : 135- 138: diyis NnlA leetl YFHD_HAEIN : 296- 299: qeshw NpdA tsptg YFHD_HAEIN : 442- 445: enqtt NdnA nnesa YFHD_HAEIN : 447- 450: ndnan NesA vknle O 15: 8.3401 29( 10) G-x-V Occurences: 29(10) SLT_ECOLI : 198- 200: kagnt GlV tvlag SLT_ECOLI : 584- 586: ynagl GrV rtwlg SLT_ECOLI : 613- 615: fsetr GyV knvla SLT_ENTCL : 10- 12: fsetr GyV knvla SLT_HAEIN : 560- 562: fyetr GyV qnvva SLT_SALTY : 22- 24: fsetr GyV knvla TBTA_ALTSM : 124- 126: lnlge GrV lrais VIVD_BPT7 : 92- 94: akqla GlV gkfdg VIVD_BPT7 : 394- 396: gaalg GfV fgagm VIVD_BPT7 : 473- 475: lpter GaV vlhdg VIVD_BPT7 : 480- 482: vvlhd GsV lsasn VIVD_BPT7 : 756- 758: eenie GlV gienn VIVD_BPT7 : 843- 845: dgkkt GeV halmd VIVD_BPT7 : 901- 903: gmivt GnV ralgh VIVD_BPT7 : 1006- 1008: rqgml GdV isatl VIVD_BPT7 : 1202- 1204: mvdlv GgV lgfes VIVD_BPT7 : 1253- 1255: qmpsa GfV anvga VIVD_BPT7 : 1267- 1269: lmnaa GvV nspnk VP07_BPPRD : 26- 28: prlva GvV qtess VP07_BPPRD : 85- 87: nldry GdV ntall VP07_BPPRD : 112- 114: tksyp GkV mknin VP07_BPPRD : 126- 128: lfgns GpV vtpaa VP07_BPPRD : 220- 222: nyalr GvV iiaav YAFG_ECOLI : 6- 8: mywia GqV kkrnm YAFG_ECOLI : 99- 101: ynsge GrV mkaik YFHD_ECOLI : 62- 64: dllaa GlV ynser YFHD_ECOLI : 111- 113: ltvap GhV vvndl YFHD_ECOLI : 309- 311: eqsis GgV rylqd YFHD_HAEIN : 125- 127: rpknl GnV kkdiy P 16: 7.8401 43( 10) D-x(0,1)-A Occurences: 43(10) SLT_ECOLI : 256- 257: svarq D-A enarl SLT_ECOLI : 303- 305: qakwr DdA imrsq SLT_ECOLI : 304- 305: akwrd D-A imrsq SLT_ECOLI : 396- 398: yelki DkA pqnvd SLT_ECOLI : 403- 405: apqnv DsA ltqgp SLT_ECOLI : 598- 599: sagri D-A vafve SLT_ECOLI : 622- 623: nvlay D-A yyryf SLT_ENTCL : 19- 20: nvlay D-A yyrhf SLT_ENTCL : 30- 31: fmgek D-A lmsda SLT_ENTCL : 35- 36: dalms D-A ewqrr SLT_HAEIN : 158- 160: tsats DnA kennr SLT_HAEIN : 198- 199: ktvli D-A fpryl SLT_HAEIN : 409- 410: felav D-A sivak SLT_SALTY : 7- 8: sagai D-A vafve SLT_SALTY : 31- 32: nvlay D-A yyryf TBTA_ALTSM : 186- 188: avlpv DcA vildn VIVD_BPT7 : 21- 22: fqkaa D-A ngvsy VIVD_BPT7 : 127- 129: ayskg DfA sisee VIVD_BPT7 : 144- 146: mrnll DvA kspma VIVD_BPT7 : 384- 385: svagg D-A dyaga VIVD_BPT7 : 386- 388: aggda DyA gaalg VIVD_BPT7 : 406- 407: msais D-A vaagl VIVD_BPT7 : 525- 527: ktlgs DdA dirrv VIVD_BPT7 : 526- 527: tlgsd D-A dirrv VIVD_BPT7 : 579- 580: ykams D-A mkdpe VIVD_BPT7 : 733- 735: ekyam DkA ygish VIVD_BPT7 : 810- 812: rrvng DiA imgst VIVD_BPT7 : 998- 999: tnyll D-A arqgm VIVD_BPT7 : 998- 1000: tnyll DaA rqgml VIVD_BPT7 : 1081- 1083: adkva DeA mlrph VIVD_BPT7 : 1135- 1136: nnrai D-A alsii VIVD_BPT7 : 1135- 1137: nnrai DaA lsiit VP07_BPPRD : 200- 201: agsay D-A vtdav VP07_BPPRD : 204- 205: ydavt D-A vsapv YAFG_ECOLI : 60- 61: qtrny D-A rrdvv YFHD_ECOLI : 239- 240: flrav D-A vlpql YFHD_ECOLI : 272- 273: qeshw D-A qatsp YFHD_ECOLI : 302- 303: itdrt D-A eqsis YFHD_ECOLI : 347- 348: yahml D-A ralta YFHD_HAEIN : 83- 85: dkhni DlA aahll YFHD_HAEIN : 184- 186: iansi DiA aiqqi YFHD_HAEIN : 203- 205: afdit DeA nvhwy YFHD_HAEIN : 298- 299: shwnp D-A tsptg YFHD_HAEIN : 371- 372: lghli D-A rrltq YFHD_HAEIN : 443- 445: nqttn DnA nnesa Q 17: 7.8401 48( 10) S-x(1,2)-A Occurences: 48(10) SLT_ECOLI : 22- 25: clltv SsvA radsl SLT_ECOLI : 23- 25: lltvs Sv-A radsl SLT_ECOLI : 35- 38: ldeqr SryA qikqa SLT_ECOLI : 145- 148: wntgq SeeA wqgak SLT_ECOLI : 220- 222: asaii Sl-A nnpnt SLT_ECOLI : 251- 253: avafa Sv-A rqdae SLT_ECOLI : 266- 268: rlmip Sl-A qaqql SLT_ECOLI : 429- 432: dntar SewA nlvks SLT_ECOLI : 459- 462: qwwdl SvqA tiagk SLT_ECOLI : 496- 498: keipq Sy-A maiar SLT_ECOLI : 575- 577: nnrif Ss-A aynag SLT_ECOLI : 575- 578: nnrif SsaA ynagl SLT_ECOLI : 576- 578: nrifs Sa-A ynagl SLT_ENTCL : 34- 36: kdalm Sd-A ewqrr SLT_HAEIN : 16- 19: iftal SafA dspnt SLT_HAEIN : 73- 75: kkqqf Se-A tqnit SLT_HAEIN : 157- 160: qtsat SdnA kennr SLT_HAEIN : 395- 398: tqlkl SeyA knqqw SLT_HAEIN : 411- 414: lavda SivA kawdy SLT_HAEIN : 462- 464: npmaq Ss-A nargl SLT_HAEIN : 463- 466: pmaqs SanA rglmq SLT_HAEIN : 475- 477: mqllp St-A kltae SLT_HAEIN : 538- 540: vgkwl Sr-A sgkla SLT_SALTY : 2- 5: n SagA idava TBTA_ALTSM : 19- 22: itwmk SarA epyly TBTA_ALTSM : 93- 96: qdvid StrA alnfm TBTA_ALTSM : 152- 155: aqtnq SvrA krtsc VIVD_BPT7 : 148- 151: ldvak SpmA gqlet VIVD_BPT7 : 241- 243: aelsn Sv-A gmafr VIVD_BPT7 : 317- 319: nfend Sr-A aeagl VIVD_BPT7 : 317- 320: nfend SraA eaglg VIVD_BPT7 : 366- 368: vvgae Sa-A lnvas VIVD_BPT7 : 379- 381: eglrt Sv-A ggdad VIVD_BPT7 : 405- 407: gmsai Sd-A vaagl VIVD_BPT7 : 524- 527: lktlg SddA dirrv VIVD_BPT7 : 545- 547: ptgmq Sg-A sgkfg VIVD_BPT7 : 578- 580: lykam Sd-A mkdpe VIVD_BPT7 : 870- 873: tvwet SlrA indlg VIVD_BPT7 : 1095- 1097: vslqd Sh-A fgalg VIVD_BPT7 : 1210- 1213: lgfes SkmA rstil VP07_BPPRD : 1- 3: Sg-A lqwwe VP07_BPPRD : 139- 141: giapv Sg-A qemta VP07_BPPRD : 244- 246: qdein Sa-A mkmip YAFG_ECOLI : 33- 35: dphat Sg-A naagi YAFG_ECOLI : 68- 71: rdvva SttA alnmm YAFG_ECOLI : 114- 116: kargk St-A fwslp YFHD_ECOLI : 158- 160: ytiad Sv-A islfq YFHD_ECOLI : 196- 198: gdntl Sa-A lldff YFHD_ECOLI : 361- 363: kgnpd Sw-A dvkqr YFHD_HAEIN : 330- 333: tdpeq SikA gseyl R 18: 7.8401 56( 10) S-x(0,1)-A Occurences: 56(10) SLT_ECOLI : 23- 25: lltvs SvA radsl SLT_ECOLI : 216- 217: yqtia S-A iisla SLT_ECOLI : 220- 222: asaii SlA nnpnt SLT_ECOLI : 251- 253: avafa SvA rqdae SLT_ECOLI : 266- 268: rlmip SlA qaqql SLT_ECOLI : 404- 405: pqnvd S-A ltqgp SLT_ECOLI : 496- 498: keipq SyA maiar SLT_ECOLI : 506- 507: iarqe S-A wnpkv SLT_ECOLI : 575- 577: nnrif SsA aynag SLT_ECOLI : 576- 577: nrifs S-A aynag SLT_ECOLI : 576- 578: nrifs SaA ynagl SLT_ECOLI : 593- 594: twlgn S-A grida SLT_ECOLI : 637- 638: kptlm S-A tewgr SLT_ENTCL : 34- 36: kdalm SdA ewqrr SLT_HAEIN : 16- 17: iftal S-A fadsp SLT_HAEIN : 65- 66: egllk S-A vkkqq SLT_HAEIN : 73- 75: kkqqf SeA tqnit SLT_HAEIN : 154- 155: neqqt S-A tsdna SLT_HAEIN : 291- 292: wlnll S-A esksk SLT_HAEIN : 454- 455: iarqe S-A wnpma SLT_HAEIN : 462- 464: npmaq SsA nargl SLT_HAEIN : 463- 464: pmaqs S-A nargl SLT_HAEIN : 475- 477: mqllp StA kltae SLT_HAEIN : 538- 540: vgkwl SrA sgkla SLT_SALTY : 2- 3: n S-A gaida TBTA_ALTSM : 19- 20: itwmk S-A raepy TBTA_ALTSM : 55- 56: sdfna S-A yshkh VIVD_BPT7 : 241- 243: aelsn SvA gmafr VIVD_BPT7 : 317- 319: nfend SrA aeagl VIVD_BPT7 : 329- 330: lgakl S-A giiga VIVD_BPT7 : 366- 367: vvgae S-A alnva VIVD_BPT7 : 366- 368: vvgae SaA lnvas VIVD_BPT7 : 379- 381: eglrt SvA ggdad VIVD_BPT7 : 402- 403: fgagm S-A isdav VIVD_BPT7 : 405- 407: gmsai SdA vaagl VIVD_BPT7 : 443- 444: arnan S-A dlsrm VIVD_BPT7 : 484- 485: dgsvl S-A snpin VIVD_BPT7 : 545- 547: ptgmq SgA sgkfg VIVD_BPT7 : 578- 580: lykam SdA mkdpe VIVD_BPT7 : 924- 925: kskpv S-A kelke VIVD_BPT7 : 1010- 1011: lgdvi S-A tltgk VIVD_BPT7 : 1095- 1097: vslqd ShA fgalg VIVD_BPT7 : 1251- 1252: leqmp S-A gfvan VP07_BPPRD : 1- 3: SgA lqwwe VP07_BPPRD : 14- 15: tigaa S-A qynld VP07_BPPRD : 139- 141: giapv SgA qemta VP07_BPPRD : 197- 198: anaag S-A ydavt VP07_BPPRD : 207- 208: vtdav S-A pveaa VP07_BPPRD : 244- 245: qdein S-A amkmi VP07_BPPRD : 244- 246: qdein SaA mkmip YAFG_ECOLI : 25- 26: lpive S-A fdpha YAFG_ECOLI : 33- 35: dphat SgA naagi YAFG_ECOLI : 114- 116: kargk StA fwslp YFHD_ECOLI : 139- 140: ddkkg S-A elmed YFHD_ECOLI : 158- 160: ytiad SvA islfq YFHD_ECOLI : 196- 197: gdntl S-A alldf YFHD_ECOLI : 196- 198: gdntl SaA lldff YFHD_ECOLI : 361- 363: kgnpd SwA dvkqr YFHD_HAEIN : 107- 108: gpayh S-A swqla YFHD_HAEIN : 449- 450: nanne S-A vknle S 19: 7.8401 27( 10) L-x(0,1)-M Occurences: 27(10) SLT_ECOLI : 77- 78: qitdd L-M nqpav SLT_ECOLI : 190- 192: lerir LaM kagnt SLT_ECOLI : 262- 263: aenar L-M ipsla SLT_ECOLI : 289- 290: ivawr L-M gndvt SLT_ECOLI : 338- 340: twlar LpM eakek SLT_ECOLI : 372- 373: eilhq L-M qqrgf SLT_ECOLI : 418- 419: arvre L-M ywnld SLT_ECOLI : 521- 522: vgasg L-M qimpg SLT_ECOLI : 635- 636: gdkpt L-M satew SLT_ENTCL : 32- 33: gekda L-M sdaew SLT_HAEIN : 273- 275: lterr LrM aiwqk SLT_HAEIN : 469- 470: anarg L-M qllps SLT_SALTY : 44- 45: gdkpt L-M srtew TBTA_ALTSM : 44- 45: piela L-M plies VIVD_BPT7 : 51- 53: sktgp LgM mqftk VIVD_BPT7 : 640- 641: dtkre L-M enpai VIVD_BPT7 : 677- 678: rhaka L-M iqryg VIVD_BPT7 : 848- 849: gevha L-M dtvki VIVD_BPT7 : 1195- 1197: qlgap LaM vdlvg VIVD_BPT7 : 1262- 1263: nvgat L-M naagv VIVD_BPT7 : 1284- 1285: dfmtg L-M nstke VP07_BPPRD : 47- 48: vgamg L-M qlmpa VP07_BPPRD : 50- 51: mglmq L-M patak VP07_BPPRD : 160- 162: pdltg LtM gagsp YAFG_ECOLI : 73- 75: sttaa LnM mqrln YFHD_ECOLI : 142- 143: kgsae L-M edvie YFHD_HAEIN : 62- 64: tlgve LeM kifdn T 20: 7.8401 83( 10) L-x(3,4)-A Occurences: 83(10) SLT_ECOLI : 77- 82: qitdd LmnqpA vtvtn SLT_ECOLI : 190- 194: lerir Lamk-A gntgl SLT_ECOLI : 199- 204: agntg LvtvlA gqmpa SLT_ECOLI : 281- 286: dqiqe LrdivA wrlmg SLT_ECOLI : 331- 336: gdrrg LntwlA rlpme SLT_ECOLI : 338- 342: twlar Lpme-A kekde SLT_ECOLI : 393- 398: geeye LkidkA pqnvd SLT_ECOLI : 423- 427: lmywn Ldnt-A rsewa SLT_ECOLI : 446- 450: teqaq Lary-A fnnqw SLT_ECOLI : 458- 462: nqwwd Lsvq-A tiagk SLT_ECOLI : 590- 594: rvrtw Lgns-A grida SLT_ECOLI : 619- 623: yvknv Layd-A yyryf SLT_ENTCL : 16- 20: yvknv Layd-A yyrhf SLT_ENTCL : 32- 36: gekda Lmsd-A ewqrr SLT_HAEIN : 9- 14: valis LciftA lsafa SLT_HAEIN : 15- 19: cifta Lsaf-A dspnt SLT_HAEIN : 62- 66: lqveg Llks-A vkkqq SLT_HAEIN : 287- 292: eltsw LnllsA esksk SLT_HAEIN : 340- 345: kqayq LnvpiA psftq SLT_HAEIN : 394- 398: ttqlk Lsey-A knqqw SLT_HAEIN : 406- 410: qqwfe Lavd-A sivak SLT_HAEIN : 422- 427: wdyls LrlpnA yseyf SLT_HAEIN : 472- 477: rglmq LlpstA kltae SLT_HAEIN : 473- 477: glmql Lpst-A kltae SLT_HAEIN : 502- 506: plnni Llgt-A hlnel SLT_HAEIN : 521- 525: pnnri Liaa-A ynaga SLT_HAEIN : 546- 551: sgkla LdefvA sipfy SLT_SALTY : 28- 32: yvknv Layd-A yyryf TBTA_ALTSM : 38- 43: vekrn LpielA lmpli TBTA_ALTSM : 68- 73: sglwq LtpaiA kyfkv TBTA_ALTSM : 183- 188: ptiav LpvdcA vildn VIVD_BPT7 : 15- 19: sdydg Lfqk-A adang VIVD_BPT7 : 15- 20: sdydg LfqkaA dangv VIVD_BPT7 : 29- 34: gvsyd LlrkvA wtesr VIVD_BPT7 : 30- 34: vsydl Lrkv-A wtesr VIVD_BPT7 : 77- 82: pdddr LnpelA inaaa VIVD_BPT7 : 81- 85: rlnpe Lain-A aakql VIVD_BPT7 : 81- 86: rlnpe LainaA akqla VIVD_BPT7 : 102- 107: fdgde LkaalA ynqge VIVD_BPT7 : 142- 146: nymrn Lldv-A kspma VIVD_BPT7 : 238- 243: aaeae LsnsvA gmafr VIVD_BPT7 : 305- 309: enldd Likl-A nenfe VIVD_BPT7 : 355- 359: gkgfk Link-A lvvga VIVD_BPT7 : 360- 364: linka Lvvg-A esaal VIVD_BPT7 : 376- 381: vaseg LrtsvA ggdad VIVD_BPT7 : 522- 527: iglkt LgsddA dirrv VIVD_BPT7 : 640- 645: dtkre LmenpA ifgnt VIVD_BPT7 : 687- 692: ygaeg LqegiA rswmn VIVD_BPT7 : 829- 833: lkdei Lalk-A kaegd VIVD_BPT7 : 831- 835: deila Lkak-A egdgk VIVD_BPT7 : 855- 859: dtvki Ltgr-A rrnqd VIVD_BPT7 : 877- 881: raind Lgff-A knaym VIVD_BPT7 : 928- 933: vsake LkelhA slfgk VIVD_BPT7 : 996- 1000: gttny Llda-A rqgml VIVD_BPT7 : 1072- 1076: pramd Lwrl-A dkvad VIVD_BPT7 : 1075- 1080: mdlwr LadkvA deaml VIVD_BPT7 : 1092- 1097: phkvs LqdshA fgalg VIVD_BPT7 : 1191- 1196: srssq LgaplA mvdlv VIVD_BPT7 : 1262- 1266: nvgat Lmna-A gvvns VIVD_BPT7 : 1303- 1308: tqqlv LkiyeA ngvnl VP07_BPPRD : 50- 55: mglmq LmpatA kslgv VP07_BPPRD : 58- 63: ataks LgvtnA ydptq VP07_BPPRD : 160- 164: pdltg Ltmg-A gspdf YAFG_ECOLI : 88- 92: fdgdw Lltv-A aynsg YAFG_ECOLI : 88- 93: fdgdw LltvaA ynsge YAFG_ECOLI : 89- 93: dgdwl Ltva-A ynsge YFHD_ECOLI : 20- 25: gkpfg LdyelA kqfad YFHD_ECOLI : 24- 29: gldye LakqfA dylgv YFHD_ECOLI : 51- 56: qlfdd LdngnA dllaa YFHD_ECOLI : 98- 103: yrprt LgnltA drltv YFHD_ECOLI : 151- 156: viegk LdytiA dsvai YFHD_ECOLI : 235- 240: dtrtf LravdA vlpql YFHD_ECOLI : 248- 253: pqlkp LfekyA eeidw YFHD_ECOLI : 260- 265: eidwr LlaaiA yqesh YFHD_ECOLI : 261- 265: idwrl Laai-A yqesh YFHD_ECOLI : 287- 292: rgmmm LtkntA qslgi YFHD_ECOLI : 346- 350: gyahm Ldar-A ltakt YFHD_ECOLI : 381- 386: pyysk LtygyA rghea YFHD_HAEIN : 50- 55: gfeye LakafA dtlgv YFHD_HAEIN : 166- 171: ltqee LllqlA egkip YFHD_HAEIN : 167- 171: tqeel Llql-A egkip YFHD_HAEIN : 284- 289: eldwr LlaavA yqesh YFHD_HAEIN : 285- 289: ldwrl Laav-A yqesh YFHD_HAEIN : 311- 316: rgimm LtkntA qhmki YFHD_HAEIN : 393- 397: dvkkn Lpll-A ekryy YFHD_HAEIN : 405- 410: ryysq LkygyA rgyea Number of patterns evaluated by Pratt:177 Total running time: 1 seconds