------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file TRANKETOLASE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TRANKETOLASE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DAS_HANPO 710 TKT1_ECOLI 664 TKT1_YEAST 677 TKT2_ECOLI 667 TKT2_YEAST 681 TKTC_ALCEU 670 TKTP_ALCEU 670 TKT_BACSU 107 TKT_HAEIN 665 TKT_HUMAN 623 TKT_MOUSE 623 TKT_MYCLE 699 TKT_PICST 695 TKT_RHOSH 657 TKT_STRPN 656 YE39_HAEIN 625 YPUX_RHOCA 641 Pratt run started at Thu Feb 6 21:28:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 25( 17) L-G-x(0,1)-D-x(0,2)-G 2: 15.1802 24( 17) G-x(2)-G-x(1,3)-G-x(4,5)-G 3: 14.6802 28( 17) G-x(4)-G-x(0,2)-A-x(0,2)-A 4: 14.6802 19( 17) G-x(1,3)-G-x-D-x(0,2)-G 5: 12.0102 34( 17) G-A-x(2,3)-G 6: 12.0102 40( 17) G-x(0,1)-A-x-A 7: 12.0102 26( 17) L-x(4,5)-G-x-S 8: 12.0102 27( 17) E-x-L-x(0,1)-A 9: 12.0102 35( 17) A-x(1,2)-L-A 10: 12.0102 53( 17) A-x(3,4)-L-A 11: 12.0102 67( 17) A-x(2)-A-x(0,1)-A 12: 12.0102 73( 17) A-x(2,3)-A-x-A 13: 12.0102 42( 17) G-x-A-x(2,3)-A 14: 11.5102 27( 17) S-x(4,5)-V-x(4,5)-A 15: 11.5102 32( 17) I-x(2,3)-G-x(3,4)-P 16: 11.5102 27( 17) T-x(0,1)-I-x(2,3)-G 17: 11.5102 28( 17) G-x-T-x(3,5)-E 18: 11.5102 28( 17) G-x(1,2)-T-x(3,4)-E 19: 11.5102 21( 17) A-x-G-x(1,3)-I 20: 11.5102 34( 17) S-x(0,1)-A-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 17.3007 17( 17) G-x(1,3)-G-x-D-x(0,2)-G-[APV] B 2: 17.0966 22( 17) G-x(2)-G-x(1,3)-G-x(4,5)-G-x(4)-[AEGQS] C 3: 15.1802 25( 17) L-G-x(0,1)-D-x(0,2)-G D 4: 14.6802 28( 17) G-x(4)-G-x(0,2)-A-x(0,2)-A E 5: 13.9266 36( 17) A-x(2,3)-A-x-A-[AEGQS] F 6: 13.6387 27( 17) G-A-x(2,3)-G-x-[ADGPST] G 7: 12.0102 40( 17) G-x(0,1)-A-x-A H 8: 12.0102 26( 17) L-x(4,5)-G-x-S I 9: 12.0102 27( 17) E-x-L-x(0,1)-A J 10: 12.0102 35( 17) A-x(1,2)-L-A K 11: 12.0102 53( 17) A-x(3,4)-L-A L 12: 12.0102 67( 17) A-x(2)-A-x(0,1)-A M 13: 12.0102 42( 17) G-x-A-x(2,3)-A N 14: 11.5102 27( 17) S-x(4,5)-V-x(4,5)-A O 15: 11.5102 32( 17) I-x(2,3)-G-x(3,4)-P P 16: 11.5102 27( 17) T-x(0,1)-I-x(2,3)-G Q 17: 11.5102 28( 17) G-x-T-x(3,5)-E R 18: 11.5102 28( 17) G-x(1,2)-T-x(3,4)-E S 19: 11.5102 21( 17) A-x-G-x(1,3)-I T 20: 11.5102 34( 17) S-x(0,1)-A-x(0,1)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 17.3007 17( 17) G-x(1,3)-G-x-D-x(0,2)-G-[APV] Occurences: 17(17) DAS_HANPO : 276- 284: hcaah GnalGeD--GV relki TKT1_ECOLI : 466- 472: thdsi Gl--GeD--GP thqpv TKT1_YEAST : 478- 484: thdsi Gv--GeD--GP thqpi TKT2_ECOLI : 464- 470: thdsi Gl--GeD--GP thqav TKT2_YEAST : 473- 479: thdsi Gl--GeD--GP thqpi TKTC_ALCEU : 471- 477: thdsi Gl--GeD--GP thqpv TKTP_ALCEU : 471- 477: thdsi Gl--GeD--GP thqpv TKT_BACSU : 69- 79: ytgle GdvlGiDrfGA sapge TKT_HAEIN : 467- 473: thdsi Gl--GeD--GP thqpv TKT_HUMAN : 418- 426: cgshc GvsiGeD--GA sqmal TKT_MOUSE : 418- 426: cgshc GvsiGeD--GP sqmal TKT_MYCLE : 495- 501: thdsv Gl--GeD--GP thqpi TKT_PICST : 470- 476: thdsi Gl--GeD--GP thqpi TKT_RHOSH : 462- 468: thdsi Gl--GeD--GP thqpv TKT_STRPN : 620- 630: yvgld GavlGiDtfGA sapap YE39_HAEIN : 423- 430: aidra Giv-GaD--GA thqga YPUX_RHOCA : 424- 431: midra Glv-GqD--GA thaga B 2: 17.0966 22( 17) G-x(2)-G-x(1,3)-G-x(4,5)-G-x(4)-[AEGQS] Occurences: 22(17) DAS_HANPO : 417- 435: lstqc GlsGdysGryieyGirehA mcaia TKT1_ECOLI : 115- 131: vettt GplGq--GianavGmaiaE ktlaa TKT1_ECOLI : 625- 642: wykyv GlnGaivGmttf-GesapA ellfe TKT1_YEAST : 115- 131: vevtt GplGq--GisnavGmamaQ anldm TKT2_ECOLI : 113- 129: vettt GplGq--GlanavGlaiaE rtlaa TKT2_ECOLI : 623- 640: wykyv GlkGaivGmtgy-GesapA dklfp TKT2_YEAST : 116- 132: veits GplGq--GisnavGmaiaQ anfaa TKTC_ALCEU : 120- 136: vettt GplGq--GlanavGmalaE kllaa TKTC_ALCEU : 628- 645: wrgvv GeqGlalGidtf-GesapA ealyq TKTP_ALCEU : 120- 136: vettt GplGq--GlanavGmalaE kllaa TKTP_ALCEU : 628- 645: wrgvv GeqGlalGidsf-GesapA ealyq TKT_BACSU : 66- 83: wgkyt GleGdvlGidrf-GasapG etiin TKT_HAEIN : 114- 130: vettt GplGq--GitnavGmaiaE ktlag TKT_HAEIN : 626- 643: wykyv GfnGrviGmnsf-GesapA dqlfk TKT_HUMAN : 123- 139: tdvat GslGq--GlgaacGmaytG kyfdk TKT_MOUSE : 123- 139: tdvat GslGq--GlgaacGmaytG kyfdk TKT_MYCLE : 133- 149: veitt GplGq--GlasavGmamaS ryerg TKT_PICST : 114- 130: aevtt GplGq--GicngvGialaQ aqfaa TKT_RHOSH : 120- 136: ievtt GplGq--GiatavGmalaE rmkna TKT_STRPN : 617- 634: wykyv GldGavlGidtf-GasapA pkvla YE39_HAEIN : 423- 439: aidra GivGad-Gathq-GafdiS fmrci YPUX_RHOCA : 424- 440: midra GlvGqd-Gatha-GafdvS mlanl C 3: 15.1802 25( 17) L-G-x(0,1)-D-x(0,2)-G Occurences: 25(17) DAS_HANPO : 279- 283: ahgna LGeD--G vrelk TKT1_ECOLI : 467- 471: hdsig LGeD--G pthqp TKT1_YEAST : 155- 158: ytyvf LG-D--G clqeg TKT2_ECOLI : 465- 469: hdsig LGeD--G pthqa TKT2_YEAST : 474- 478: hdsig LGeD--G pthqp TKTC_ALCEU : 159- 162: htyvf LG-D--G clmeg TKTC_ALCEU : 472- 476: hdsig LGeD--G pthqp TKTC_ALCEU : 634- 640: eqgla LGiDtfG esapa TKTP_ALCEU : 159- 162: htyvf LG-D--G clmeg TKTP_ALCEU : 472- 476: hdsig LGeD--G pthqp TKTP_ALCEU : 634- 640: eqgla LGiDsfG esapa TKT_BACSU : 72- 78: legdv LGiDrfG asapg TKT_HAEIN : 153- 156: htyvf LG-D--G clmeg TKT_HAEIN : 468- 472: hdsig LGeD--G pthqp TKT_HUMAN : 153- 156: rvycl LG-D--G elseg TKT_MOUSE : 153- 156: rvycm LG-D--G evseg TKT_MYCLE : 496- 500: hdsvg LGeD--G pthqp TKT_MYCLE : 573- 576: rggyv LG-D--G gssea TKT_MYCLE : 573- 577: rggyv LG-Dg-G sseak TKT_PICST : 153- 156: ytyvf LG-D--G clmeg TKT_PICST : 401- 406: paatg LG-DysG ryiry TKT_PICST : 471- 475: hdsig LGeD--G pthqp TKT_RHOSH : 463- 467: hdsig LGeD--G pthqp TKT_STRPN : 623- 629: ldgav LGiDtfG asapa YE39_HAEIN : 604- 610: ealad LGlDtkG ieeki YPUX_RHOCA : 247- 253: tlfee LGfDyiG pvdgh D 4: 14.6802 28( 17) G-x(4)-G-x(0,2)-A-x(0,2)-A Occurences: 28(17) DAS_HANPO : 35- 45: iveqy GgghpGs-AmgA maigi TKT1_ECOLI : 115- 124: vettt GplgqGi-An-A vgmai TKT1_ECOLI : 409- 419: nyihy GvrefGmtAi-A ngisl TKT1_ECOLI : 632- 642: ngaiv GmttfGesAp-A ellfe TKT1_YEAST : 427- 438: reham GaimnGisAfgA nykpy TKT2_ECOLI : 113- 122: vettt GplgqGl-An-A vglai TKT2_ECOLI : 407- 417: nyihy GvrefGmtAi-A ngiah TKT2_ECOLI : 630- 640: kgaiv GmtgyGesAp-A dklfp TKT2_YEAST : 422- 433: rehgm GaimnGisAfgA nykpy TKTC_ALCEU : 120- 129: vettt GplgqGl-An-A vgmal TKTC_ALCEU : 414- 422: nyvsy GvrefGm-A--A amngi TKTC_ALCEU : 414- 423: nyvsy GvrefGmaA--A mngia TKTC_ALCEU : 414- 423: nyvsy GvrefGm-Aa-A mngia TKTC_ALCEU : 635- 645: qglal GidtfGesAp-A ealyq TKTP_ALCEU : 120- 129: vettt GplgqGl-An-A vgmal TKTP_ALCEU : 414- 422: nyvsy GvrefGm-A--A vmngi TKTP_ALCEU : 635- 645: qglal GidsfGesAp-A ealyq TKT_BACSU : 73- 81: egdvl GidrfG--As-A pgeti TKT_HAEIN : 633- 643: ngrvi GmnsfGesAp-A dqlfk TKT_HUMAN : 123- 132: tdvat GslgqGlgA--A cgmay TKT_MOUSE : 123- 132: tdvat GslgqGlgA--A cgmay TKT_MYCLE : 133- 142: veitt GplgqGl-As-A vgmam TKT_PICST : 419- 427: reham GaimnGi-A--A fgany TKT_PICST : 419- 430: reham GaimnGiaAfgA nykny TKT_RHOSH : 120- 129: ievtt GplgqGi-At-A vgmal TKT_RHOSH : 405- 413: syihy GirehGm-A--A amngi TKT_RHOSH : 405- 414: syihy GirehGmaA--A mngia TKT_RHOSH : 405- 414: syihy GirehGm-Aa-A mngia TKT_RHOSH : 625- 633: qdgfv GmtgfG--As-A papal TKT_RHOSH : 625- 635: qdgfv GmtgfGasAp-A palyq TKT_STRPN : 624- 632: dgavl GidtfG--As-A papkv TKT_STRPN : 624- 634: dgavl GidtfGasAp-A pkvla YE39_HAEIN : 153- 163: cvigd GaitaGm-AfeA lnhag YPUX_RHOCA : 153- 163: aiigd GsitaGm-AyeA lnhag YPUX_RHOCA : 221- 230: emhlp GpvrdG--ArrA rqmvt E 5: 13.9266 36( 17) A-x(2,3)-A-x-A-[AEGQS] Occurences: 36(17) DAS_HANPO : 242- 249: ativk AleyAqAE khrpt TKT1_ECOLI : 124- 131: qgian AvgmAiAE ktlaa TKT1_YEAST : 124- 131: qgisn AvgmAmAQ anldm TKT2_ECOLI : 122- 129: qglan AvglAiAE rtlaa TKT2_YEAST : 125- 132: qgisn AvgmAiAQ anfaa TKTC_ALCEU : 129- 136: qglan AvgmAlAE kllaa TKTC_ALCEU : 233- 240: halda AlheAkAE rdrpt TKTC_ALCEU : 299- 305: advad Awd-ArAQ gaare TKTC_ALCEU : 573- 580: iamra AldlAdAG iaarv TKTC_ALCEU : 657- 663: fgltp Ahv-AaAA rvlle TKTP_ALCEU : 129- 136: qglan AvgmAlAE kllaa TKTP_ALCEU : 233- 240: halda AlheAkAE rdrpt TKTP_ALCEU : 299- 305: advad Awd-ArAQ gaare TKTP_ALCEU : 573- 580: iaara AldlAdAG iaarv TKTP_ALCEU : 657- 663: fgltp Ahv-AaAA rvlle TKT_BACSU : 6- 12: sevgl Aie-AqAE laken TKT_HAEIN : 123- 130: qgitn AvgmAiAE ktlag TKT_HAEIN : 227- 234: eqira AtilAqAE kgkpt TKT_HUMAN : 84- 90: apily Avw-AeAG flaea TKT_HUMAN : 89- 96: avwae AgflAeAE llnlr TKT_MOUSE : 84- 90: apily Avw-AeAG flpea TKT_MYCLE : 142- 149: qglas AvgmAmAS ryerg TKT_MYCLE : 249- 256: vgiee AianAkAA tdrps TKT_MYCLE : 688- 694: gftpe Avv-AaAE qvldn TKT_PICST : 16- 22: tirll Avd-AvAA ansgh TKT_RHOSH : 129- 136: qgiat AvgmAlAE rmkna TKT_RHOSH : 321- 328: splra AfetAeAA dtsal TKT_RHOSH : 332- 339: aadts AlppAiAA ykarl TKT_RHOSH : 393- 399: gmvsv Apg-AfAG syihy TKT_STRPN : 223- 230: eaiha AietAkAS gkpsl YE39_HAEIN : 565- 571: aiqgg Ags-AvAE vlnss YPUX_RHOCA : 26- 33: kamsi AdltAlAS evrre YPUX_RHOCA : 206- 213: rqapf AalkAaAE giemh YPUX_RHOCA : 207- 213: qapfa Alk-AaAE giemh YPUX_RHOCA : 379- 386: havtf AagmAaAG lkpfl YPUX_RHOCA : 380- 386: avtfa Agm-AaAG lkpfl F 6: 13.6387 27( 17) G-A-x(2,3)-G-x-[ADGPST] Occurences: 27(17) DAS_HANPO : 44- 51: pgsam GAmaiGiA lwkyt TKT1_ECOLI : 28- 34: ksghp GApm-GmA diaev TKT1_ECOLI : 263- 269: thdsh GApl-GdA eialt TKT1_ECOLI : 628- 634: yvgln GAiv-GmT tfges TKT1_YEAST : 31- 37: nsghp GApl-GrS paahv TKT1_YEAST : 427- 434: reham GAimnGiS afgan TKT2_ECOLI : 27- 33: nsghp GApm-GmA diaev TKT2_ECOLI : 626- 632: yvglk GAiv-GmT gyges TKT2_YEAST : 32- 38: qsghp GApl-GlA pvahv TKT2_YEAST : 422- 429: rehgm GAimnGiS afgan TKTC_ALCEU : 34- 40: ksghp GApm-GmA emaev TKTC_ALCEU : 268- 274: ghdvh GApl-GaP eiaam TKTP_ALCEU : 34- 40: rsghp GApm-GmA emaev TKTP_ALCEU : 268- 274: ghdvh GApl-GaP eiaam TKT_BACSU : 78- 85: gidrf GAsapGeT iiney TKT_HAEIN : 28- 34: ksghp GApm-GmA diaev TKT_HUMAN : 130- 136: lgqgl GAac-GmA ytgky TKT_MOUSE : 130- 136: lgqgl GAac-GmA ytgky TKT_MYCLE : 284- 290: tgkah GAal-GeD evaat TKT_PICST : 29- 35: nsghp GApl-GlA paaha TKT_PICST : 419- 426: reham GAimnGiA afgan TKT_RHOSH : 100- 107: sfrql GArtaGhP eygha TKT_RHOSH : 263- 269: ghdvh GApl-GaA eiaaa TKT_STRPN : 257- 263: tnavh GApl-GaD etast TKT_STRPN : 620- 626: yvgld GAvl-GiD tfgas YE39_HAEIN : 153- 160: cvigd GAitaGmA fealn YPUX_RHOCA : 567- 573: itleq GAmg-GfG amvlh G 7: 12.0102 40( 17) G-x(0,1)-A-x-A Occurences: 40(17) DAS_HANPO : 44- 47: pgsam G-AmA igial DAS_HANPO : 139- 143: isnsv GlAiA tknla TKT1_ECOLI : 120- 124: gplgq GiAnA vgmai TKT1_ECOLI : 126- 130: ianav GmAiA ektla TKT1_YEAST : 126- 130: isnav GmAmA qanld TKT1_YEAST : 226- 230: nedla GiAkA irqrk TKT2_ECOLI : 118- 122: gplgq GlAnA vglai TKT2_ECOLI : 124- 128: lanav GlAiA ertla TKT2_YEAST : 127- 131: isnav GmAiA qanfa TKTC_ALCEU : 125- 129: gplgq GlAnA vgmal TKTC_ALCEU : 131- 135: lanav GmAlA eklla TKTC_ALCEU : 256- 259: tvigk G-ApA kaggh TKTC_ALCEU : 419- 423: gvref GmAaA mngia TKTP_ALCEU : 125- 129: gplgq GlAnA vgmal TKTP_ALCEU : 131- 135: lanav GmAlA eklla TKTP_ALCEU : 256- 259: tvigk G-ApA kaggh TKT_BACSU : 78- 81: gidrf G-AsA pgeti TKT_HAEIN : 125- 129: itnav GmAiA ektla TKT_HAEIN : 300- 303: sakek G-AaA ekswe TKT_HUMAN : 322- 326: trkay GqAlA klgha TKT_MOUSE : 322- 326: trkay GlAlA klgha TKT_MYCLE : 138- 142: gplgq GlAsA vgmam TKT_MYCLE : 144- 148: lasav GmAmA sryer TKT_PICST : 33- 37: pgapl GlApA ahavf TKT_PICST : 65- 69: fvlsn GhAcA llysm TKT_PICST : 125- 129: icngv GiAlA qaqfa TKT_RHOSH : 125- 129: gplgq GiAtA vgmal TKT_RHOSH : 131- 135: iatav GmAlA ermkn TKT_RHOSH : 302- 305: riaar G-AdA raawe TKT_RHOSH : 395- 398: vsvap G-AfA gsyih TKT_RHOSH : 410- 414: gireh GmAaA mngia TKT_RHOSH : 571- 575: llaae GiAaA vvsap TKT_RHOSH : 630- 633: gmtgf G-AsA papal TKT_STRPN : 297- 300: hvadr G-AsA yqawt TKT_STRPN : 629- 632: gidtf G-AsA papkv YE39_HAEIN : 132- 136: isagl GiAvA aeren YE39_HAEIN : 289- 293: tkkgk GyApA ekdpi YE39_HAEIN : 566- 570: iqgga GsAvA evlns YPUX_RHOCA : 289- 293: ttkgk GyApA egaed YPUX_RHOCA : 381- 385: vtfaa GmAaA glkpf H 8: 12.0102 26( 17) L-x(4,5)-G-x-S Occurences: 26(17) DAS_HANPO : 412- 419: fmdps Lstqc-GlS gdysg TKT1_ECOLI : 372- 380: eafgp LlpeflGgS adlap TKT1_ECOLI : 373- 380: afgpl Lpefl-GgS adlap TKT1_YEAST : 373- 380: dvynq Lpeli-GgS adlvl TKT2_ECOLI : 371- 378: aygpm Lpell-GgS adlap TKT2_YEAST : 373- 380: nmvqv Lpeli-GgS adltp TKTC_ALCEU : 187- 194: gklic Lyddn-GiS idgev TKTC_ALCEU : 378- 385: altpa Lpell-GgS adltg TKTC_ALCEU : 513- 520: awlaa Lrred-GpS clvls TKTC_ALCEU : 634- 642: eqgla LgidtfGeS apaea TKTP_ALCEU : 187- 194: gklic Lyddn-GiS idgev TKTP_ALCEU : 378- 385: altpa Lpell-GgS adltg TKTP_ALCEU : 634- 642: eqgla LgidsfGeS apaea TKT_BACSU : 51- 58: dvkkr Laiem-GsS fgwgk TKT_BACSU : 72- 80: legdv LgidrfGaS apget TKT_HAEIN : 372- 379: ayahv Lpefl-GgS adlas TKT_HUMAN : 182- 190: nlvai LdinrlGqS dpapl TKT_HUMAN : 412- 420: esnin LcgshcGvS igedg TKT_MOUSE : 412- 420: esnin LcgshcGvS igedg TKT_MYCLE : 392- 399: aigpk Lpelw-GgS adlag TKT_PICST : 528- 535: ltrqn Lpqle-GsS iekas TKT_RHOSH : 368- 375: vvnea Lpfav-GgS adltg TKT_STRPN : 365- 372: vvaak Lptfl-GgS adlah TKT_STRPN : 623- 631: ldgav LgidtfGaS apapk YE39_HAEIN : 489- 497: vkltp LemlpiGkS rlirk YPUX_RHOCA : 98- 105: srmlt Lrqag-GiS gfpkr I 9: 12.0102 27( 17) E-x-L-x(0,1)-A Occurences: 27(17) DAS_HANPO : 340- 343: peegq EfL-A rmrge TKT1_ECOLI : 532- 535: qerte EqL-A niarg TKT1_ECOLI : 570- 574: avaay EkLtA egvka TKT1_YEAST : 222- 225: vengn EdL-A giaka TKT1_YEAST : 490- 493: thqpi EtL-A hfrsl TKT1_YEAST : 622- 625: pimsv EvL-A ttcwg TKT2_ECOLI : 476- 479: thqav EqL-A slrlt TKT2_ECOLI : 568- 571: tlqaa EkL-A gegrn TKT2_YEAST : 485- 488: thqpi EtL-A hlrai TKT2_YEAST : 617- 620: pimsf EvL-A tsswg TKTC_ALCEU : 136- 140: gmala EkLlA atfnr TKTP_ALCEU : 136- 140: gmala EkLlA atfnr TKT_BACSU : 41- 45: deykn EvLpA dvkkr TKT_HAEIN : 346- 350: skafi EkLqA npasi TKT_HAEIN : 571- 575: avqaa EaLsA egkkv TKT_HUMAN : 432- 435: sqmal EdL-A mfrsv TKT_HUMAN : 514- 517: gvtlh EaL-A aaell TKT_HUMAN : 514- 518: gvtlh EaLaA aellk TKT_MOUSE : 432- 435: sqmal EdL-A mfrsv TKT_MOUSE : 514- 517: gvtlh EaL-A aaesl TKT_MOUSE : 514- 518: gvtlh EaLaA aeslk TKT_MYCLE : 507- 510: thqpi EhL-A alrai TKT_MYCLE : 507- 511: thqpi EhLaA lraip TKT_PICST : 482- 485: thqpi EtL-A hfrat TKT_RHOSH : 474- 477: thqpv EhL-A slrai TKT_RHOSH : 530- 534: tehrd EnLtA rgayl TKT_STRPN : 471- 474: thepv EhL-A glram YE39_HAEIN : 523- 527: alels EkLnA tvvdm YE39_HAEIN : 599- 602: qatqq EaL-A dlgld YPUX_RHOCA : 526- 530: alkaa EmLeA egvst J 10: 12.0102 35( 17) A-x(1,2)-L-A Occurences: 35(17) DAS_HANPO : 440- 444: amcai AngLA aynkg TKT1_ECOLI : 381- 384: flggs Ad-LA psnlt TKT1_YEAST : 168- 172: gisse AssLA ghlkl TKT1_YEAST : 328- 331: fpelg Ae-LA rrlsg TKT1_YEAST : 579- 583: lsvea AktLA aknik TKT2_ECOLI : 122- 126: qglan AvgLA iaert TKT2_ECOLI : 379- 382: llggs Ad-LA psnlt TKT2_ECOLI : 567- 571: itlqa AekLA gegrn TKT2_YEAST : 452- 456: syaag AvrLA alsgn TKTC_ALCEU : 172- 176: glshe AcsLA gtlrl TKTC_ALCEU : 508- 511: aetay Aw-LA alrre TKTC_ALCEU : 573- 577: iamra AldLA dagia TKTP_ALCEU : 24- 28: flaad AveLA rsghp TKTP_ALCEU : 172- 176: glshe AcsLA gtlgl TKTP_ALCEU : 508- 511: aetay Aw-LA alqre TKTP_ALCEU : 573- 577: iaara AldLA dagia TKT_BACSU : 11- 14: aieaq Ae-LA kenid TKT_HAEIN : 166- 170: gishe AcsLA gtlgl TKT_HAEIN : 227- 231: eqira AtiLA qaekg TKT_HAEIN : 380- 383: flggs Ad-LA ssnlt TKT_HUMAN : 89- 93: avwae AgfLA eaell TKT_HUMAN : 457- 461: vatek AveLA antkg TKT_MOUSE : 320- 324: iatrk AygLA laklg TKT_MOUSE : 457- 461: vatek AveLA antkg TKT_MYCLE : 49- 53: ghpgt AmsLA playt TKT_MYCLE : 53- 56: tamsl Ap-LA ytlfq TKT_MYCLE : 188- 192: gvtse AssLA avqql TKT_MYCLE : 400- 403: lwggs Ad-LA gsnnt TKT_PICST : 166- 170: gvsse AssLA ghlql TKT_RHOSH : 564- 568: lalaa AdlLA aegia TKT_STRPN : 373- 376: flggs Ad-LA hsnmt TKT_STRPN : 496- 500: awnea AwyLA vtsek TKT_STRPN : 561- 565: lavsa AkeLA sqgek YE39_HAEIN : 378- 382: havtf AtgLA iggyk YPUX_RHOCA : 516- 519: ilsfg Ah-LA qalka K 11: 12.0102 53( 17) A-x(3,4)-L-A Occurences: 53(17) DAS_HANPO : 143- 148: vglai Atkn-LA atynk DAS_HANPO : 438- 444: ehamc AiangLA aynkg TKT1_ECOLI : 130- 135: vgmai Aekt-LA aqfnr TKT1_YEAST : 578- 583: slsve Aakt-LA aknik TKT2_ECOLI : 120- 126: lgqgl AnavgLA iaert TKT2_ECOLI : 128- 133: vglai Aert-LA aqfnq TKT2_ECOLI : 316- 321: aaykk Ahpq-LA eeftr TKT2_ECOLI : 474- 479: gpthq Aveq-LA slrlt TKT2_ECOLI : 499- 505: dqvea AvgwkLA verhn TKT2_ECOLI : 566- 571: eitlq Aaek-LA gegrn TKT2_YEAST : 33- 38: sghpg Aplg-LA pvahv TKT2_YEAST : 450- 456: fvsya AgavrLA alsgn TKTC_ALCEU : 16- 21: arcan Alrf-LA adave TKTC_ALCEU : 129- 135: qglan AvgmaLA eklla TKTC_ALCEU : 135- 140: vgmal Aekl-LA atfnr TKTC_ALCEU : 322- 328: fvsyc AahpeLA eefvr TKTC_ALCEU : 323- 328: vsyca Ahpe-LA eefvr TKTC_ALCEU : 506- 511: dgaet Ayaw-LA alrre TKTC_ALCEU : 572- 577: eiamr Aald-LA dagia TKTP_ALCEU : 16- 21: arcan Alrf-LA adave TKTP_ALCEU : 22- 28: lrfla AdaveLA rsghp TKTP_ALCEU : 129- 135: qglan AvgmaLA eklla TKTP_ALCEU : 135- 140: vgmal Aekl-LA atfnr TKTP_ALCEU : 322- 328: fvsyc AahpeLA eefvr TKTP_ALCEU : 323- 328: vsyca Ahpe-LA eefvr TKTP_ALCEU : 506- 511: dgaet Ayaw-LA alqre TKTP_ALCEU : 572- 577: eiaar Aald-LA dagia TKT_BACSU : 9- 14: glaie Aqae-LA kenid TKT_HAEIN : 2- 8: m AtrrqLA nairv TKT_HAEIN : 10- 15: rqlan Airv-LA mdsvq TKT_HAEIN : 129- 134: vgmai Aekt-LA gqfnr TKT_HAEIN : 226- 231: aeqir Aati-LA qaekg TKT_HAEIN : 317- 322: aayak Aype-LA aefkr TKT_HUMAN : 87- 93: lyavw AeagfLA eaell TKT_HUMAN : 320- 326: iatrk AygqaLA klgha TKT_HUMAN : 430- 435: gasqm Aled-LA mfrsv TKT_MOUSE : 320- 326: iatrk AyglaLA klgha TKT_MOUSE : 430- 435: gpsqm Aled-LA mfrsv TKT_MYCLE : 532- 538: netay AwrtiLA rgans TKT_MYCLE : 600- 606: vqlav AaqklLA dkdii TKT_MYCLE : 601- 606: qlava Aqkl-LA dkdii TKT_PICST : 30- 35: sghpg Aplg-LA paaha TKT_RHOSH : 15- 20: trman Aira-LA mdave TKT_RHOSH : 129- 135: qgiat AvgmaLA ermkn TKT_RHOSH : 481- 486: laslr Aipn-LA virpa TKT_RHOSH : 562- 568: lelal AaadlLA aegia TKT_RHOSH : 563- 568: elala Aadl-LA aegia TKT_STRPN : 314- 319: adyke Ahpe-LA aevea TKT_STRPN : 495- 500: cawne Aawy-LA vtsek TKT_STRPN : 560- 565: nlavs Aake-LA sqgek TKT_STRPN : 634- 639: gasap Apkv-LA eygft YE39_HAEIN : 191- 197: senvg AlnnhLA rifsg YPUX_RHOCA : 26- 32: kamsi AdltaLA sevrr L 12: 12.0102 67( 17) A-x(2)-A-x(0,1)-A Occurences: 67(17) DAS_HANPO : 42- 47: ghpgs AmgAmA igial DAS_HANPO : 435- 440: gireh AmcAiA nglaa DAS_HANPO : 585- 589: aemef AdkA-A kilgr TKT1_ECOLI : 313- 318: wnekf AayAkA ypqea TKT1_YEAST : 225- 230: gnedl AgiAkA irqrk TKT2_ECOLI : 440- 444: mfvey ArnA-A rmaal TKT2_ECOLI : 444- 448: yarna ArmA-A lmkar TKT2_YEAST : 133- 137: maiaq AnfA-A tyned TKTC_ALCEU : 11- 16: ridsa ArcAnA lrfla TKTC_ALCEU : 229- 233: ghdah AldA-A lheak TKTC_ALCEU : 294- 299: pftvp AdvAdA wdara TKTC_ALCEU : 299- 304: advad AwdArA qgaar TKTC_ALCEU : 304- 308: awdar AqgA-A reaew TKTC_ALCEU : 503- 508: rpcdg AetAyA wlaal TKTC_ALCEU : 508- 512: aetay AwlA-A lrred TKTC_ALCEU : 569- 573: sevei AmrA-A ldlad TKTC_ALCEU : 579- 583: ldlad AgiA-A rvvsm TKTC_ALCEU : 657- 661: fgltp AhvA-A aarvl TKTC_ALCEU : 657- 662: fgltp AhvAaA arvll TKTP_ALCEU : 11- 16: ridpa ArcAnA lrfla TKTP_ALCEU : 229- 233: ghdah AldA-A lheak TKTP_ALCEU : 294- 299: pftvp AdvAdA wdara TKTP_ALCEU : 299- 304: advad AwdArA qgaar TKTP_ALCEU : 304- 308: awdar AqgA-A reaew TKTP_ALCEU : 503- 508: rpcdg AetAyA wlaal TKTP_ALCEU : 508- 512: aetay AwlA-A lqren TKTP_ALCEU : 569- 573: sevei AarA-A ldlad TKTP_ALCEU : 579- 583: ldlad AgiA-A rvvsm TKTP_ALCEU : 596- 600: velfy AqdA-A yrdsv TKTP_ALCEU : 657- 661: fgltp AhvA-A aarvl TKTP_ALCEU : 657- 662: fgltp AhvAaA arvll TKT_BACSU : 6- 11: sevgl AieAqA elake TKT_HAEIN : 312- 317: weekf AayAkA ypela TKT_HAEIN : 364- 369: kasqn AieAyA hvlpe TKT_HAEIN : 566- 570: sevel AvqA-A ealsa TKT_HUMAN : 29- 33: issiq AssA-A gsghp TKT_HUMAN : 84- 89: apily AvwAeA gflae TKT_HUMAN : 515- 519: vtlhe AlaA-A ellkk TKT_MOUSE : 29- 33: issiq AttA-A gsghp TKT_MOUSE : 84- 89: apily AvwAeA gflpe TKT_MOUSE : 515- 519: vtlhe AlaA-A eslkk TKT_MOUSE : 571- 575: ggige AvsA-A vvgep TKT_MYCLE : 282- 286: intgk AhgA-A lgede TKT_MYCLE : 376- 380: rskel AtrA-A sgavl TKT_MYCLE : 688- 692: gftpe AvvA-A aeqvl TKT_MYCLE : 688- 693: gftpe AvvAaA eqvld TKT_PICST : 16- 21: tirll AvdAvA aansg TKT_PICST : 19- 23: llavd AvaA-A nsghp TKT_PICST : 35- 40: aplgl ApaAhA vfkkm TKT_PICST : 131- 135: ialaq AqfA-A tynkp TKT_PICST : 224- 228: dtdit AiaA-A ideak TKT_PICST : 349- 354: pvytp AdaAvA trkls TKT_RHOSH : 15- 20: trman AirAlA mdave TKT_RHOSH : 206- 210: stdqk ApfA-A sgwhv TKT_RHOSH : 229- 233: eeiaa AieA-A rrdpr TKT_RHOSH : 269- 273: aplga AeiA-A arerl TKT_RHOSH : 269- 274: aplga AeiAaA rerlg TKT_RHOSH : 300- 305: wgria ArgAdA raawe TKT_RHOSH : 393- 398: gmvsv ApgAfA gsyih TKT_RHOSH : 560- 564: selel AlaA-A dllaa TKT_STRPN : 219- 223: gtdle AihA-A ietak TKT_STRPN : 557- 561: sevnl AvsA-A kelas YE39_HAEIN : 565- 570: aiqgg AgsAvA evlns YPUX_RHOCA : 203- 207: tiarq ApfA-A lkaaa YPUX_RHOCA : 207- 211: qapfa AlkA-A aegie YPUX_RHOCA : 207- 212: qapfa AlkAaA egiem YPUX_RHOCA : 343- 347: dqaiv AvtA-A mptgt YPUX_RHOCA : 380- 384: avtfa AgmA-A aglkp YPUX_RHOCA : 380- 385: avtfa AgmAaA glkpf YPUX_RHOCA : 431- 436: vgqdg AthAgA fdvsm YPUX_RHOCA : 516- 521: ilsfg AhlAqA lkaae YPUX_RHOCA : 521- 525: ahlaq AlkA-A emlea YPUX_RHOCA : 625- 629: dirdt AlaA-A rpsks M 13: 12.0102 42( 17) G-x-A-x(2,3)-A Occurences: 42(17) DAS_HANPO : 40- 45: ggghp GsAmg-A maigi DAS_HANPO : 364- 370: qqeft GdAptrA aarel TKT1_ECOLI : 32- 37: pgapm GmAdi-A evlwr TKT1_ECOLI : 267- 272: hgapl GdAei-A ltreq TKT1_ECOLI : 301- 307: dakea GqAkesA wnekf TKT1_ECOLI : 379- 384: peflg GsAdl-A psnlt TKT1_YEAST : 126- 132: isnav GmAmaqA nldmp TKT2_ECOLI : 31- 36: pgapm GmAdi-A evlwn TKT2_ECOLI : 377- 382: pellg GsAdl-A psnlt TKT2_YEAST : 36- 41: pgapl GlApv-A hvifk TKT2_YEAST : 127- 133: isnav GmAiaqA nfaat TKT2_YEAST : 264- 269: tagvh GsAlk-A ddvkq TKT2_YEAST : 656- 661: dftad GvAsr-A ektin TKTC_ALCEU : 38- 43: pgapm GmAem-A evlwr TKTC_ALCEU : 306- 311: daraq GaAre-A ewear TKTP_ALCEU : 38- 43: pgapm GmAem-A evvwr TKTP_ALCEU : 306- 311: daraq GaAre-A ewear TKT_BACSU : 4- 9: sev GlAie-A qaela TKT_HAEIN : 32- 37: pgapm GmAdi-A evlwr TKT_HAEIN : 378- 383: peflg GsAdl-A ssnlt TKT_HUMAN : 130- 136: lgqgl GaAcgmA ytgky TKT_HUMAN : 451- 457: fypsd GvAtekA velaa TKT_HUMAN : 569- 575: yeggi GeAvssA vvgep TKT_MOUSE : 130- 136: lgqgl GaAcgmA ytgky TKT_MOUSE : 451- 457: fypsd GvAtekA velaa TKT_MOUSE : 569- 574: yeggi GeAvs-A avvge TKT_MOUSE : 569- 575: yeggi GeAvsaA vvgep TKT_MYCLE : 47- 53: gnghp GtAmslA playt TKT_MYCLE : 280- 285: tlint GkAhg-A alged TKT_MYCLE : 280- 286: tlint GkAhgaA lgede TKT_MYCLE : 398- 403: pelwg GsAdl-A gsnnt TKT_PICST : 33- 38: pgapl GlApa-A havfk TKT_PICST : 125- 131: icngv GiAlaqA qfaat TKT_PICST : 424- 430: gaimn GiAafgA nykny TKT_RHOSH : 37- 42: pgmpm GmAdv-A tvlfn TKT_RHOSH : 267- 272: hgapl GaAei-A aarer TKT_RHOSH : 267- 273: hgapl GaAeiaA arerl TKT_STRPN : 30- 35: pgvvm GaApm-A ysslq TKT_STRPN : 371- 376: ptflg GsAdl-A hsnmt YE39_HAEIN : 132- 137: isagl GiAva-A erena YE39_HAEIN : 158- 163: gaita GmAfe-A lnhag YE39_HAEIN : 563- 568: enaiq GgAgs-A vaevl YPUX_RHOCA : 16- 22: ldrvt GpAdlkA msiad YPUX_RHOCA : 158- 163: gsita GmAye-A lnhag YPUX_RHOCA : 369- 375: rvfdv GiAeqhA vtfaa N 14: 11.5102 27( 17) S-x(4,5)-V-x(4,5)-A Occurences: 27(17) DAS_HANPO : 540- 551: fssil SlsrneVlqyl-A sraqr TKT1_ECOLI : 224- 234: ghdaa Sikra-Veear-A vtdkp TKT1_ECOLI : 433- 445: flpyt StflmfVeyarnA vrmaa TKT1_ECOLI : 600- 611: aayre SvlpkaVtarv-A veagi TKT1_YEAST : 37- 48: aplgr Spaah-VlgesnA hepnq TKT1_YEAST : 198- 209: gatsi Sfded-VakryeA ygwev TKT1_YEAST : 549- 559: liesa Skggy-Vlqdv-A npdii TKT2_ECOLI : 598- 609: eeyre SvlpsnVaarv-A veagi TKT2_YEAST : 198- 209: gktsy Sfded-VlkryeA ygwev TKT2_YEAST : 561- 572: diilv Stgse-VsisidA akkly TKTC_ALCEU : 194- 204: ddngi Sidge-Vagwf-A ddtpk TKTP_ALCEU : 194- 204: ddngi Sidge-Vagwf-A ddtpk TKT_BACSU : 93- 103: neygf Svpnv-Vnrvk-A link TKT_HAEIN : 561- 572: fiatg SevelaVqaae-A lsaeg TKT_HAEIN : 601- 612: aayre SvlpaaVtkrv-A ieagi TKT_HUMAN : 305- 316: nirmp SlpsykVgdki-A trkay TKT_HUMAN : 498- 508: kvvlk Skddq-Vtvig-A gvtlh TKT_MOUSE : 498- 508: kvvlk Skddq-Vtvig-A gvtlh TKT_MYCLE : 633- 644: yeyrd SvlppsVsarv-A veagv TKT_MYCLE : 640- 650: lppsv Sarva-Veagv-A qcwhk TKT_PICST : 207- 218: iaryk SygwhiVevsd-A dtdit TKT_RHOSH : 345- 356: ykarl SaeapkVatrk-A semal TKT_RHOSH : 386- 398: snltr SkgmvsVapgafA gsyih TKT_STRPN : 22- 32: inkan Sghpg-Vvmga-A pmays TKT_STRPN : 575- 587: ksrvv SmpstdVfdkqdA aykee YE39_HAEIN : 52- 62: sghla Sglgt-Veltv-A lhyvy YPUX_RHOCA : 52- 62: gghlg Sslgv-Veltv-A lhavf O 15: 11.5102 32( 17) I-x(2,3)-G-x(3,4)-P Occurences: 32(17) DAS_HANPO : 488- 495: gthds Ine-Geng-P thqpv TKT1_ECOLI : 366- 374: asqna IeafGpll-P eflgg TKT1_ECOLI : 422- 430: aiang IslhGgfl-P ytstf TKT1_ECOLI : 465- 472: ythds Igl-Gedg-P thqpv TKT1_YEAST : 433- 442: aimng IsafGanykP yggtf TKT1_YEAST : 477- 484: athds Igv-Gedg-P thqpi TKT2_ECOLI : 420- 428: aiang IahhGgfv-P ytatf TKT2_ECOLI : 463- 470: ythds Igl-Gedg-P thqav TKT2_YEAST : 428- 437: aimng IsafGanykP yggtf TKT2_YEAST : 472- 479: athds Igl-Gedg-P thqpi TKTC_ALCEU : 427- 435: aamng IalhGgli-P yggtf TKTC_ALCEU : 470- 477: lthds Igl-Gedg-P thqpv TKTC_ALCEU : 636- 644: glalg IdtfGesa-P aealy TKTP_ALCEU : 427- 435: avmng IalhGgli-P yggtf TKTP_ALCEU : 470- 477: lthds Igl-Gedg-P thqpv TKTP_ALCEU : 636- 644: glalg IdsfGesa-P aealy TKT_BACSU : 74- 82: gdvlg IdrfGasa-P getii TKT_BACSU : 87- 95: pgeti IneyGfsv-P nvvnr TKT_HAEIN : 423- 431: aimng IalhGgfi-P ygatf TKT_HAEIN : 466- 473: ythds Igl-Gedg-P thqpv TKT_HUMAN : 184- 192: vaild InrlGqsd-P aplqh TKT_MOUSE : 184- 192: vaifd InrlGqsd-P aplqh TKT_MYCLE : 536- 545: yawrt IlarGansgP vglil TKT_PICST : 469- 476: athds Igl-Gedg-P thqpi TKT_PICST : 578- 586: legqg Ika-GvvslP dqltf TKT_RHOSH : 418- 426: aamng IalhGglr-P yggtf TKT_RHOSH : 461- 468: mthds Igl-Gedg-P thqpv TKT_STRPN : 458- 465: fthds Iav-Gedg-P thepv TKT_STRPN : 625- 633: gavlg IdtfGasa-P apkvl YE39_HAEIN : 75- 84: pfdql IwdvGhqayP hkilt YE39_HAEIN : 508- 516: gqkia IlnfGtll-P salel YPUX_RHOCA : 75- 84: pgdkl IwdvGhqcyP hkilt P 16: 11.5102 27( 17) T-x(0,1)-I-x(2,3)-G Occurences: 27(17) DAS_HANPO : 260- 265: lincr TvIgs-G aafen TKT1_ECOLI : 246- 251: llmck TiIgf-G spnka TKT1_ECOLI : 246- 251: llmck T-IigfG spnka TKT1_ECOLI : 416- 421: refgm TaIan-G islhg TKT1_YEAST : 300- 305: dhyqk T-IlkpG veann TKT2_ECOLI : 244- 249: liicr TvIgf-G spnka TKT2_ECOLI : 387- 391: apsnl T-Iwk-G svslk TKT2_ECOLI : 414- 419: refgm TaIan-G iahhg TKT2_YEAST : 248- 253: iikvt TtIgf-G slqqg TKT2_YEAST : 249- 253: ikvtt T-Igf-G slqqg TKTC_ALCEU : 251- 256: liccr TvIgk-G apaka TKTP_ALCEU : 251- 256: liccr TvIgk-G apaka TKT_BACSU : 85- 91: sapge TiIneyG fsvpn TKT_HAEIN : 245- 250: liick TiIgf-G spnks TKT_HAEIN : 245- 250: liick T-IigfG spnks TKT_HUMAN : 504- 509: kddqv TvIga-G vtlhe TKT_MOUSE : 213- 218: afgwh TiIvd-G hsvee TKT_MOUSE : 213- 218: afgwh T-IivdG hsvee TKT_MOUSE : 504- 509: kddqv TvIga-G vtlhe TKT_MYCLE : 275- 280: gypap TlInt-G kahga TKT_MYCLE : 535- 540: ayawr T-IlarG ansgp TKT_PICST : 246- 251: lvrlt TtIgf-G slaqg TKT_PICST : 247- 251: vrltt T-Igf-G slaqg TKT_RHOSH : 246- 251: miacr TvIgy-G apnkq TKT_RHOSH : 549- 554: gerqv TlIat-G selel TKT_STRPN : 240- 245: lievk TvIgy-G spnkq TKT_STRPN : 381- 387: ahsnm TyIktdG lqdda TKT_STRPN : 410- 414: efamg T-Iln-G malhg YE39_HAEIN : 125- 130: vghss TsIsa-G lgiav YPUX_RHOCA : 146- 151: qpvgd T-IaiiG dgsit Q 17: 11.5102 28( 17) G-x-T-x(3,5)-E Occurences: 28(17) DAS_HANPO : 494- 501: negen GpThqpv-E spalf TKT1_ECOLI : 104- 111: ghpes GvTplgv-E tttgp TKT1_ECOLI : 471- 478: glged GpThqpv-E qvasl TKT1_ECOLI : 632- 638: ngaiv GmTtfg--E sapae TKT1_YEAST : 193- 201: kitid GaTsisfdE dvakr TKT1_YEAST : 483- 490: gvged GpThqpi-E tlahf TKT2_ECOLI : 103- 109: ghpei GyTpgv--E tttgp TKT2_ECOLI : 469- 476: glged GpThqav-E qlasl TKT2_ECOLI : 630- 636: kgaiv GmTgyg--E sapad TKT2_YEAST : 193- 201: sisid GkTsysfdE dvlkr TKT2_YEAST : 478- 485: glged GpThqpi-E tlahl TKTC_ALCEU : 110- 116: ghpel GvTpgv--E tttgp TKTC_ALCEU : 476- 483: glged GpThqpv-E haasl TKTP_ALCEU : 476- 483: glged GpThqpv-E haasl TKT_BACSU : 83- 89: gasap GeTiin--E ygfsv TKT_HAEIN : 433- 441: gfipy GaTflmfyE yahna TKT_HAEIN : 472- 479: glged GpThqpv-E qtasl TKT_HUMAN : 247- 255: tfkgr GiTgvedkE swhgk TKT_MOUSE : 247- 255: tfkgr GiTgiedkE awhgk TKT_MYCLE : 113- 121: slrtw GsTtpghpE frhtk TKT_MYCLE : 213- 221: qisie GdTkitlcE dtaar TKT_MYCLE : 500- 507: glged GpThqpi-E hlaal TKT_PICST : 191- 199: kisid GsTevaftE dviar TKT_PICST : 475- 482: glged GpThqpi-E tlahf TKT_RHOSH : 467- 474: glged GpThqpv-E hlasl TKT_STRPN : 464- 471: avged GpThepv-E hlagl YE39_HAEIN : 342- 349: dakii GiTpamr-E gsgmv YPUX_RHOCA : 240- 246: tampg GaTlfe--E lgfdy R 18: 11.5102 28( 17) G-x(1,2)-T-x(3,4)-E Occurences: 28(17) DAS_HANPO : 494- 501: negen Gp-ThqpvE spalf TKT1_ECOLI : 104- 111: ghpes Gv-TplgvE tttgp TKT1_ECOLI : 471- 478: glged Gp-ThqpvE qvasl TKT1_ECOLI : 632- 638: ngaiv Gm-Ttfg-E sapae TKT1_YEAST : 96- 104: qfrql GsrTpghpE felpg TKT1_YEAST : 483- 490: gvged Gp-ThqpiE tlahf TKT2_ECOLI : 103- 109: ghpei Gy-Tpgv-E tttgp TKT2_ECOLI : 469- 476: glged Gp-ThqavE qlasl TKT2_ECOLI : 630- 636: kgaiv Gm-Tgyg-E sapad TKT2_YEAST : 478- 485: glged Gp-ThqpiE tlahl TKTC_ALCEU : 110- 116: ghpel Gv-Tpgv-E tttgp TKTC_ALCEU : 476- 483: glged Gp-ThqpvE haasl TKTP_ALCEU : 476- 483: glged Gp-ThqpvE haasl TKT_BACSU : 83- 89: gasap Ge-Tiin-E ygfsv TKT_HAEIN : 472- 479: glged Gp-ThqpvE qtasl TKT_HUMAN : 451- 459: fypsd GvaTekavE laant TKT_MOUSE : 451- 459: fypsd GvaTekavE laant TKT_MYCLE : 113- 121: slrtw GstTpghpE frhtk TKT_MYCLE : 500- 507: glged Gp-ThqpiE hlaal TKT_PICST : 94- 102: kfrql GskTpghpE ntdvp TKT_PICST : 475- 482: glged Gp-ThqpiE tlahf TKT_RHOSH : 100- 108: sfrql GarTaghpE yghae TKT_RHOSH : 467- 474: glged Gp-ThqpvE hlasl TKT_STRPN : 464- 471: avged Gp-ThepvE hlagl YE39_HAEIN : 342- 349: dakii Gi-TpamrE gsgmv YE39_HAEIN : 605- 612: aladl GldTkgi-E ekiln YE39_HAEIN : 605- 613: aladl GldTkgieE kilnf YPUX_RHOCA : 239- 246: vtamp GgaTlfe-E lgfdy YPUX_RHOCA : 240- 246: tampg Ga-Tlfe-E lgfdy S 19: 11.5102 21( 17) A-x-G-x(1,3)-I Occurences: 21(17) DAS_HANPO : 42- 48: ghpgs AmGamaI gialw DAS_HANPO : 560- 564: qrrrn AaGy--I ledae TKT1_ECOLI : 124- 129: qgian AvGma-I aektl TKT1_ECOLI : 208- 214: amrfe AyGwhvI rdidg TKT1_ECOLI : 401- 406: ained AaGny-I hygvr TKT1_YEAST : 425- 429: gireh AmGa--I mngis TKT2_ECOLI : 122- 127: qglan AvGla-I aertl TKT2_YEAST : 125- 130: qgisn AvGma-I aqanf TKTC_ALCEU : 213- 219: pkrfa AyGwhvI advdg TKTP_ALCEU : 213- 219: pkrfa AyGwhvI advdg TKT_BACSU : 81- 86: rfgas ApGet-I ineyg TKT_BACSU : 81- 87: rfgas ApGetiI neygf TKT_HAEIN : 123- 128: qgitn AvGma-I aektl TKT_HAEIN : 207- 213: aerfe AyGwqvI rnvdg TKT_HUMAN : 208- 214: qkrce AfGwhaI ivdgh TKT_MOUSE : 208- 214: qkrce AfGwhtI ivdgh TKT_MYCLE : 443- 447: gvreh AmGa--I lsgiv TKT_PICST : 417- 421: gvreh AmGa--I mngia TKT_RHOSH : 294- 298: adlye AwGr--I aarga TKT_STRPN : 407- 411: gvref AmGt--I lngma YE39_HAEIN : 378- 383: havtf AtGla-I ggykp YPUX_RHOCA : 274- 280: vtrar AsGpvlI hvctt T 20: 11.5102 34( 17) S-x(0,1)-A-x(0,1)-G Occurences: 34(17) DAS_HANPO : 41- 44: gghpg S-AmG amaig DAS_HANPO : 182- 185: alesi SlA-G hmgld TKT1_ECOLI : 169- 172: shevc SlA-G tlklg TKT1_YEAST : 122- 126: lgqgi SnAvG mamaq TKT1_YEAST : 170- 173: sseas SlA-G hlklg TKT1_YEAST : 434- 437: imngi S-AfG anykp TKT1_YEAST : 452- 456: flnfv SyAaG avrls TKT2_ECOLI : 167- 170: shevc SlA-G tlglg TKT2_YEAST : 108- 110: hpefh S-A-G veits TKT2_YEAST : 123- 127: lgqgi SnAvG maiaq TKT2_YEAST : 170- 173: ssets SlA-G hlqlg TKT2_YEAST : 429- 432: imngi S-AfG anykp TKT2_YEAST : 447- 451: flnfv SyAaG avrla TKTC_ALCEU : 174- 177: sheac SlA-G tlrlg TKTP_ALCEU : 174- 177: sheac SlA-G tlglg TKT_BACSU : 80- 83: drfga S-ApG etiin TKT_HAEIN : 168- 171: sheac SlA-G tlglg TKT_HAEIN : 574- 577: aaeal S-AeG kkvrv TKT_HUMAN : 30- 34: ssiqa SsAaG sghpt TKT_HUMAN : 31- 34: siqas SaA-G sghpt TKT_HUMAN : 31- 34: siqas S-AaG sghpt TKT_HUMAN : 371- 375: eqnmv SiAvG catrn TKT_MOUSE : 371- 375: eqnmv SiAvG catrd TKT_MYCLE : 82- 84: drfvl S-A-G hsslt TKT_MYCLE : 141- 144: gqgla S-AvG mamas TKT_MYCLE : 386- 389: sgavl S-AiG pklpe TKT_PICST : 168- 171: sseas SlA-G hlqlg TKT_PICST : 252- 256: tigfg SlAqG thgvh TKT_PICST : 444- 448: flnfv SyAaG avrls TKT_RHOSH : 68- 70: drfvl S-A-G hgsml TKT_RHOSH : 391- 395: skgmv SvApG afags TKT_STRPN : 165- 168: sseaa SyA-G lqnli TKT_STRPN : 457- 461: vfthd SiAvG edgpt YE39_HAEIN : 128- 130: sstsi S-A-G lgiav YPUX_RHOCA : 128- 132: sstsi SaAlG favgr Number of patterns evaluated by Pratt:2550 Total running time: 6 seconds