------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file TP1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TP1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: STP1_BOVIN 54 STP1_HUMAN 54 STP1_MOUSE 54 STP1_PIG 54 STP1_RAT 54 STP1_SHEEP 54 Pratt run started at Thu Feb 6 21:28:27 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 141.7817 6( 6) G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(2)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 2: 141.2817 6( 6) K-x(3,4)-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(2)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 3: 133.4416 6( 6) R-x(2)-K-x-R-x-P-H-K-G-V-K-R-x(2)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 4: 128.7716 6( 6) K-x(0,1)-R-x-P-H-K-G-V-K-R-x(2)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 5: 112.5914 6( 6) K-G-V-K-R-x(2)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 6: 102.7513 6( 6) S-T-S-R-K-L-K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 7: 99.0812 6( 6) R-x(0,1)-G-x(0,1)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 8: 99.0812 6( 6) K-x(1,2)-G-x(0,1)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 9: 99.0812 6( 6) V-x(2,3)-G-x(0,1)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 10: 99.0812 6( 6) G-x(3,4)-G-x(0,1)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 11: 98.5812 6( 6) T-S-R-K-L-K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 12: 94.4112 6( 6) S-R-K-L-K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 13: 90.2411 6( 6) R-K-L-K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 14: 86.0711 6( 6) K-L-K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 15: 83.4010 6( 6) K-x-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 16: 83.4010 6( 6) S-x(2)-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x-R-N-x-R-S-H-L 17: 77.7310 6( 6) K-x(2)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 18: 77.7310 6( 6) L-x(3)-G-x-R-R-x-K-x-R-x-P-H-K-G-V-K-R-x(0,2)-S-x(2)-K-x(0,1)-R-K-x(4)-S-x-K 19: 73.5609 6( 6) S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x(0,2)-N-x(0,1)-R 20: 73.5609 10( 6) G-x(0,1)-S-K-R-K-Y-R-K-x(2)-L-K-S-R-K-R-x-D-D-A-x(0,2)-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 173.1496 6( 6) S-T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N B 2: 173.1496 6( 6) T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R C 3: 173.1496 6( 6) S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S D 4: 173.1496 6( 6) R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H E 5: 173.1496 6( 6) K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L F 6: 169.6373 6( 6) G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L G 7: 169.1373 6( 6) K-x(3,4)-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L H 8: 168.9796 6( 6) L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L I 9: 164.8095 6( 6) K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L J 10: 154.8954 6( 6) R-x(2)-K-x-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L K 11: 147.6210 6( 6) K-x(0,1)-R-x-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L L 12: 131.4408 6( 6) K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L M 13: 111.4275 6( 6) R-x(0,1)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L N 14: 111.4275 6( 6) K-x(1,2)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L O 15: 111.4275 6( 6) V-x(2,3)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L P 16: 111.4275 6( 6) G-x(3,4)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Q 17: 110.7628 6( 6) S-T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R R 18: 106.5928 6( 6) T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R S 19: 102.4227 6( 6) S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R T 20: 99.3661 10( 6) G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-x(0,2)-N-x-R-S-H-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 173.1496 6( 6) S-T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N Occurences: 6(6) STP1_BOVIN : 1- 49: STSRKLKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRN lrshl STP1_HUMAN : 1- 49: STSRKLKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRN yrshl STP1_MOUSE : 1- 49: STSRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRN yrshl STP1_PIG : 1- 49: STSRKLKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRN yrshl STP1_RAT : 1- 49: STSRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRN yrshl STP1_SHEEP : 1- 49: STSRKLKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRN frshl B 2: 173.1496 6( 6) T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R Occurences: 6(6) STP1_BOVIN : 2- 51: s TSRKLKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlR shl STP1_HUMAN : 2- 51: s TSRKLKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyR shl STP1_MOUSE : 2- 51: s TSRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyR shl STP1_PIG : 2- 51: s TSRKLKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyR shl STP1_RAT : 2- 51: s TSRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyR shl STP1_SHEEP : 2- 51: s TSRKLKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfR shl C 3: 173.1496 6( 6) S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S Occurences: 6(6) STP1_BOVIN : 3- 52: st SRKLKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlRS hl STP1_HUMAN : 3- 52: st SRKLKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyRS hl STP1_MOUSE : 3- 52: st SRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyRS hl STP1_PIG : 3- 52: st SRKLKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyRS hl STP1_RAT : 3- 52: st SRKLKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyRS hl STP1_SHEEP : 3- 52: st SRKLKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfRS hl D 4: 173.1496 6( 6) R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H Occurences: 6(6) STP1_BOVIN : 4- 53: sts RKLKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlRSH l STP1_HUMAN : 4- 53: sts RKLKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyRSH l STP1_MOUSE : 4- 53: sts RKLKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyRSH l STP1_PIG : 4- 53: sts RKLKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyRSH l STP1_RAT : 4- 53: sts RKLKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyRSH l STP1_SHEEP : 4- 53: sts RKLKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfRSH l E 5: 173.1496 6( 6) K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 5- 54: stsr KLKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 5- 54: stsr KLKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 5- 54: stsr KLKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 5- 54: stsr KLKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 5- 54: stsr KLKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 5- 54: stsr KLKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfRSHL F 6: 169.6373 6( 6) G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 10- 54: klksq GmRRGKNRTPHKGVKRSGSKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 10- 54: klksh GmRRSKSRSPHKGVKRGGSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 10- 54: klkth GmRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 10- 54: klksh GmRRGKNRAPHKGVKRGGSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 10- 54: klkth GmRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 10- 54: klksq GtRRGKNRTPHKGVKRGCSKRKYRKSSLKSRKRCDDANRNfRSHL G 7: 169.1373 6( 6) K-x(3,4)-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 7- 54: tsrkl KsqgmRRGKNRTPHKGVKRSGSKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 7- 54: tsrkl KshgmRRSKSRSPHKGVKRGGSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 7- 54: tsrkl KthgmRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 7- 54: tsrkl KshgmRRGKNRAPHKGVKRGGSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 7- 54: tsrkl KthgmRRGKNRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 7- 54: tsrkl KsqgtRRGKNRTPHKGVKRGCSKRKYRKSSLKSRKRCDDANRNfRSHL H 8: 168.9796 6( 6) L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 6- 54: stsrk LKSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 6- 54: stsrk LKShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 6- 54: stsrk LKThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 6- 54: stsrk LKShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 6- 54: stsrk LKThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 6- 54: stsrk LKSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfRSHL I 9: 164.8095 6( 6) K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 7- 54: tsrkl KSqGmRRGKNRTPHKGVKRsgSKRKyRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 7- 54: tsrkl KShGmRRSKSRSPHKGVKRggSKRKyRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 7- 54: tsrkl KThGmRRGKNRAPHKGVKRggSKRKyRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 7- 54: tsrkl KShGmRRGKNRAPHKGVKRggSKRKyRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 7- 54: tsrkl KThGmRRGKNRAPHKGVKRggSKRKyRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 7- 54: tsrkl KSqGtRRGKNRTPHKGVKRgcSKRKyRKSSLKSRKRCDDANRNfRSHL J 10: 154.8954 6( 6) R-x(2)-K-x-R-[AST]-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 12- 54: ksqgm RrgKnRTPHKGVKRSGSKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 12- 54: kshgm RrsKsRSPHKGVKRGGSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 12- 54: kthgm RrgKnRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 12- 54: kshgm RrgKnRAPHKGVKRGGSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 12- 54: kthgm RrgKnRAPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 12- 54: ksqgt RrgKnRTPHKGVKRGCSKRKYRKSSLKSRKRCDDANRNfRSHL K 11: 147.6210 6( 6) K-x(0,1)-R-x-P-H-K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 15- 54: gmrrg KnRtPHKGVKRSGSKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 15- 54: gmrrs KsRsPHKGVKRGGSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 15- 54: gmrrg KnRaPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 15- 54: gmrrg KnRaPHKGVKRGGSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 15- 54: gmrrg KnRaPHKGVKRGGSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 15- 54: gtrrg KnRtPHKGVKRGCSKRKYRKSSLKSRKRCDDANRNfRSHL L 12: 131.4408 6( 6) K-G-V-K-R-[GS]-[CG]-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 21- 54: nrtph KGVKRSGSKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 21- 54: srsph KGVKRGGSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 21- 54: nraph KGVKRGGSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 21- 54: nraph KGVKRGGSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 21- 54: nraph KGVKRGGSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 21- 54: nrtph KGVKRGCSKRKYRKSSLKSRKRCDDANRNfRSHL M 13: 111.4275 6( 6) R-x(0,1)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 25- 54: hkgvk RsG-SKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 25- 54: hkgvk RgG-SKRKYRKGNLKSRKRGDDANRNyRSHL STP1_HUMAN : 25- 54: hkgvk R-GgSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 25- 54: hkgvk RgG-SKRKYRKSVLKSRKRGDDASRNyRSHL STP1_MOUSE : 25- 54: hkgvk R-GgSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 25- 54: hkgvk RgG-SKRKYRKGSLKSRKRCDDANRNyRSHL STP1_PIG : 25- 54: hkgvk R-GgSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 25- 54: hkgvk RgG-SKRKYRKSSLKSRKRGDDASRNyRSHL STP1_RAT : 25- 54: hkgvk R-GgSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 25- 54: hkgvk R-GcSKRKYRKSSLKSRKRCDDANRNfRSHL N 14: 111.4275 6( 6) K-x(1,2)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 24- 54: phkgv KrsG-SKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 24- 54: phkgv KrgG-SKRKYRKGNLKSRKRGDDANRNyRSHL STP1_HUMAN : 24- 54: phkgv Kr-GgSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 24- 54: phkgv KrgG-SKRKYRKSVLKSRKRGDDASRNyRSHL STP1_MOUSE : 24- 54: phkgv Kr-GgSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 24- 54: phkgv KrgG-SKRKYRKGSLKSRKRCDDANRNyRSHL STP1_PIG : 24- 54: phkgv Kr-GgSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 24- 54: phkgv KrgG-SKRKYRKSSLKSRKRGDDASRNyRSHL STP1_RAT : 24- 54: phkgv Kr-GgSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 24- 54: phkgv Kr-GcSKRKYRKSSLKSRKRCDDANRNfRSHL O 15: 111.4275 6( 6) V-x(2,3)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 23- 54: tphkg VkrsG-SKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 23- 54: sphkg VkrgG-SKRKYRKGNLKSRKRGDDANRNyRSHL STP1_HUMAN : 23- 54: sphkg Vkr-GgSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 23- 54: aphkg VkrgG-SKRKYRKSVLKSRKRGDDASRNyRSHL STP1_MOUSE : 23- 54: aphkg Vkr-GgSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 23- 54: aphkg VkrgG-SKRKYRKGSLKSRKRCDDANRNyRSHL STP1_PIG : 23- 54: aphkg Vkr-GgSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 23- 54: aphkg VkrgG-SKRKYRKSSLKSRKRGDDASRNyRSHL STP1_RAT : 23- 54: aphkg Vkr-GgSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 23- 54: tphkg Vkr-GcSKRKYRKSSLKSRKRCDDANRNfRSHL P 16: 111.4275 6( 6) G-x(3,4)-G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-[NS]-R-N-x-R-S-H-L Occurences: 6(6) STP1_BOVIN : 22- 54: rtphk GvkrsG-SKRKYRKSSLKSRKRCDDANRNlRSHL STP1_HUMAN : 22- 54: rsphk GvkrgG-SKRKYRKGNLKSRKRGDDANRNyRSHL STP1_HUMAN : 22- 54: rsphk Gvkr-GgSKRKYRKGNLKSRKRGDDANRNyRSHL STP1_MOUSE : 22- 54: raphk GvkrgG-SKRKYRKSVLKSRKRGDDASRNyRSHL STP1_MOUSE : 22- 54: raphk Gvkr-GgSKRKYRKSVLKSRKRGDDASRNyRSHL STP1_PIG : 22- 54: raphk GvkrgG-SKRKYRKGSLKSRKRCDDANRNyRSHL STP1_PIG : 22- 54: raphk Gvkr-GgSKRKYRKGSLKSRKRCDDANRNyRSHL STP1_RAT : 22- 54: raphk GvkrgG-SKRKYRKSSLKSRKRGDDASRNyRSHL STP1_RAT : 22- 54: raphk Gvkr-GgSKRKYRKSSLKSRKRGDDASRNyRSHL STP1_SHEEP : 22- 54: rtphk Gvkr-GcSKRKYRKSSLKSRKRCDDANRNfRSHL Q 17: 110.7628 6( 6) S-T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R Occurences: 6(6) STP1_BOVIN : 1- 33: STSRKLKSqGmRRGKNRTPHKGVKRsgSKRKyR ksslk STP1_HUMAN : 1- 33: STSRKLKShGmRRSKSRSPHKGVKRggSKRKyR kgnlk STP1_MOUSE : 1- 33: STSRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksvlk STP1_PIG : 1- 33: STSRKLKShGmRRGKNRAPHKGVKRggSKRKyR kgslk STP1_RAT : 1- 33: STSRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksslk STP1_SHEEP : 1- 33: STSRKLKSqGtRRGKNRTPHKGVKRgcSKRKyR ksslk R 18: 106.5928 6( 6) T-S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R Occurences: 6(6) STP1_BOVIN : 2- 33: s TSRKLKSqGmRRGKNRTPHKGVKRsgSKRKyR ksslk STP1_HUMAN : 2- 33: s TSRKLKShGmRRSKSRSPHKGVKRggSKRKyR kgnlk STP1_MOUSE : 2- 33: s TSRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksvlk STP1_PIG : 2- 33: s TSRKLKShGmRRGKNRAPHKGVKRggSKRKyR kgslk STP1_RAT : 2- 33: s TSRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksslk STP1_SHEEP : 2- 33: s TSRKLKSqGtRRGKNRTPHKGVKRgcSKRKyR ksslk S 19: 102.4227 6( 6) S-R-K-L-K-[ST]-x-G-x-R-R-[GS]-K-[NS]-R-[AST]-P-H-K-G-V-K-R-x(0,2)-S-K-R-K-x(0,1)-R Occurences: 6(6) STP1_BOVIN : 3- 33: st SRKLKSqGmRRGKNRTPHKGVKRsgSKRKyR ksslk STP1_HUMAN : 3- 33: st SRKLKShGmRRSKSRSPHKGVKRggSKRKyR kgnlk STP1_MOUSE : 3- 33: st SRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksvlk STP1_PIG : 3- 33: st SRKLKShGmRRGKNRAPHKGVKRggSKRKyR kgslk STP1_RAT : 3- 33: st SRKLKThGmRRGKNRAPHKGVKRggSKRKyR ksslk STP1_SHEEP : 3- 33: st SRKLKSqGtRRGKNRTPHKGVKRgcSKRKyR ksslk T 20: 99.3661 10( 6) G-x(0,1)-S-K-R-K-Y-R-K-[GS]-[NSV]-L-K-S-R-K-R-[CG]-D-D-A-x(0,2)-N-x-R-S-H-L Occurences: 10(6) STP1_BOVIN : 27- 54: gvkrs G-SKRKYRKSSLKSRKRCDDAnrNlRSHL STP1_HUMAN : 26- 54: kgvkr GgSKRKYRKGNLKSRKRGDDAnrNyRSHL STP1_HUMAN : 27- 54: gvkrg G-SKRKYRKGNLKSRKRGDDAnrNyRSHL STP1_MOUSE : 26- 54: kgvkr GgSKRKYRKSVLKSRKRGDDAsrNyRSHL STP1_MOUSE : 27- 54: gvkrg G-SKRKYRKSVLKSRKRGDDAsrNyRSHL STP1_PIG : 26- 54: kgvkr GgSKRKYRKGSLKSRKRCDDAnrNyRSHL STP1_PIG : 27- 54: gvkrg G-SKRKYRKGSLKSRKRCDDAnrNyRSHL STP1_RAT : 26- 54: kgvkr GgSKRKYRKSSLKSRKRGDDAsrNyRSHL STP1_RAT : 27- 54: gvkrg G-SKRKYRKSSLKSRKRGDDAsrNyRSHL STP1_SHEEP : 26- 54: kgvkr GcSKRKYRKSSLKSRKRCDDAnrNfRSHL Number of patterns evaluated by Pratt:3730 Total running time: 1 seconds