------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file TISSUE_FACTOR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TISSUE_FACTOR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TF_BOVIN 292 TF_HUMAN 295 TF_MOUSE 294 TF_RABIT 292 TF_RAT 295 Pratt run started at Thu Feb 6 21:27:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 128.7716 5( 5) S-T-x(0,1)-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T-D-E-x-V-K 2: 125.1015 5( 5) S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T-D-E-x-V 3: 124.6015 5( 5) T-x(0,1)-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T-D-E-x-V-K 4: 124.6015 5( 5) N-x(0,1)-T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T 5: 123.1015 5( 5) F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D-E-x-V-K-x-V 6: 123.1015 5( 5) T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D-E-x-V-K 7: 123.1015 5( 5) S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D-E-x-V 8: 123.1015 5( 5) W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D-E 9: 123.1015 5( 5) T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D 10: 120.9315 5( 5) P-Y-x(2)-T-x(2)-G-Q-P-x-I-Q-x(2)-E-Q-x-G-x-K-x(2)-V-x-V-x-D-x(2)-T-L-V-R-x-N-x(2)-F-L-x-L-R-x-V-F-G-x-D-L 11: 120.9315 5( 5) K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T-D-E-x-V-K-x-V 12: 120.9315 5( 5) N-x-T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D 13: 120.4315 5( 5) N-x-T-x(1,2)-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D-x-T 14: 120.4315 5( 5) A-x(2,3)-T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(2)-T-E-C-D 15: 119.4315 5( 5) G-Q-P-x-I-Q-x(2)-E-Q-x-G-x-K-x(2)-V-x-V-x-D-x(2)-T-L-V-R-x-N-x(2)-F-L-x-L-R-x-V-F-G-x-D-L-x-Y-x(0,2)-T-x(0,1)-Y 16: 118.9315 5( 5) K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-x-T-D-E-x-V-K-x-V 17: 118.9315 5( 5) N-x-T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D 18: 118.9315 5( 5) A-x-N-x-T-W-x-S-T-x-F-K-T-I-L-E-W-x-P-K-x(5)-Y-T-V-Q-I-S-x(5)-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C 19: 116.7614 5( 5) T-x(2)-G-Q-P-x-I-Q-x(2)-E-Q-x-G-x-K-x(2)-V-x-V-x-D-x(2)-T-L-V-R-x-N-x(2)-F-L-x-L-R-x-V-F-G-x-D-L-x-Y 20: 116.7614 5( 5) Y-x(2)-T-x(2)-G-Q-P-x-I-Q-x(2)-E-Q-x-G-x-K-x(2)-V-x-V-x-D-x(2)-T-L-V-R-x-N-x(2)-F-L-x-L-R-x-V-F-G-x-D-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 162.6976 5( 5) S-T-x(0,1)-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K B 2: 159.0276 5( 5) S-T-x-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V C 3: 158.5276 5( 5) T-x(0,1)-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K D 4: 158.4767 5( 5) N-x(0,1)-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T E 5: 158.0315 5( 5) K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V F 6: 157.0610 5( 5) P-Y-x-[DE]-T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L G 7: 154.4133 5( 5) F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V H 8: 154.4133 5( 5) T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K I 9: 154.4133 5( 5) S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V J 10: 154.3066 5( 5) N-x-T-x(1,2)-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T K 11: 153.0069 5( 5) T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L-x-Y-x-[IL] L 12: 152.8909 5( 5) Y-x-[DE]-T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L M 13: 151.6229 5( 5) N-x-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D N 14: 151.1884 5( 5) W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E O 15: 151.1884 5( 5) T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D P 16: 151.1229 5( 5) A-x(2,3)-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D Q 17: 150.3058 5( 5) A-[FY]-N-[IL]-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C R 18: 150.2433 5( 5) K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V S 19: 149.1037 5( 5) G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L-x-Y-x(0,2)-T-x(0,1)-Y T 20: 147.1213 5( 5) N-[IL]-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 162.6976 5( 5) S-T-x(0,1)-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K Occurences: 5(5) TF_BOVIN : 48- 97: nitwk STnFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVTDEIVK nvret TF_HUMAN : 48- 97: nltwk STnFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLTDEIVK dvkqt TF_MOUSE : 42- 91: nltwi STdFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLTDEIVK dvtwa TF_RABIT : 46- 95: nltwk STnFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLTDEVVK dvgqt TF_RAT : 43- 92: nltwi STdFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLTDEIVK dvnwt B 2: 159.0276 5( 5) S-T-x-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V Occurences: 5(5) TF_BOVIN : 48- 96: nitwk STnFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVTDEIV knvre TF_HUMAN : 48- 96: nltwk STnFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLTDEIV kdvkq TF_MOUSE : 42- 90: nltwi STdFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLTDEIV kdvtw TF_RABIT : 46- 94: nltwk STnFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLTDEVV kdvgq TF_RAT : 43- 91: nltwi STdFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLTDEIV kdvnw C 3: 158.5276 5( 5) T-x(0,1)-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K Occurences: 5(5) TF_BOVIN : 49- 97: itwks TnFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVTDEIVK nvret TF_HUMAN : 49- 97: ltwks TnFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLTDEIVK dvkqt TF_MOUSE : 43- 91: ltwis TdFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLTDEIVK dvtwa TF_RABIT : 47- 95: ltwks TnFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLTDEVVK dvgqt TF_RAT : 44- 92: ltwis TdFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLTDEIVK dvnwt D 4: 158.4767 5( 5) N-x(0,1)-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T Occurences: 5(5) TF_BOVIN : 43- 92: vvvay NiTWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVT deivk TF_HUMAN : 43- 92: tvaay NlTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLT deivk TF_MOUSE : 37- 86: pekaf NlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLT deivk TF_RABIT : 41- 90: tgray NlTWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLT devvk TF_RAT : 38- 87: pgkaf NlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLT deivk E 5: 158.0315 5( 5) K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V Occurences: 5(5) TF_BOVIN : 52- 99: kstnf KTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVTDEIVKNV retyl TF_HUMAN : 52- 99: kstnf KTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLTDEIVKDV kqtyl TF_MOUSE : 46- 93: istdf KTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLTDEIVKDV twaye TF_RABIT : 50- 97: kstnf KTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLTDEVVKDV gqtym TF_RAT : 47- 94: istdf KTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLTDEIVKDV nwtye F 6: 157.0610 5( 5) P-Y-x-[DE]-T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L Occurences: 5(5) TF_BOVIN : 131- 180: speft PYlETnLGQPTIQsFEQVGtKLnVTVqDArTLVRaNSAFLSLRDVFGkDL nytly TF_HUMAN : 134- 183: speft PYlETnLGQPTIQsFEQVGtKVnVTVeDErTLVRrNNTFLSLRDVFGkDL iytly TF_MOUSE : 134- 183: apkfl PYrDTnLGQPVIQqFEQDGrKLnVVVkDSlTLVRkNGTFLTLRQVFGkDL gyiit TF_RABIT : 132- 181: speft PYlDTnLGQPTIQsFEQVGtKLnVTVqDArTLVRrNGTFLSLRAVFGkDL nytly TF_RAT : 135- 184: arkfl PYrDTkIGQPVIQkYEQGGtKLkVTVkDSfTLVRkNGTFLTLRQVFGnDL gyilt G 7: 154.4133 5( 5) F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V Occurences: 5(5) TF_BOVIN : 51- 99: wkstn FKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTDEIVKNV retyl TF_BOVIN : 51- 99: wkstn FKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTDEIVKNV retyl TF_HUMAN : 51- 99: wkstn FKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTDEIVKDV kqtyl TF_HUMAN : 51- 99: wkstn FKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTDEIVKDV kqtyl TF_MOUSE : 45- 93: wistd FKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTDEIVKDV twaye TF_MOUSE : 45- 93: wistd FKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTDEIVKDV twaye TF_RABIT : 49- 97: wkstn FKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTDEVVKDV gqtym TF_RAT : 46- 94: wistd FKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTDEIVKDV nwtye TF_RAT : 46- 94: wistd FKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTDEIVKDV nwtye H 8: 154.4133 5( 5) T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K Occurences: 5(5) TF_BOVIN : 49- 97: itwks TNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTDEIVK nvret TF_BOVIN : 49- 97: itwks TNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTDEIVK nvret TF_HUMAN : 49- 97: ltwks TNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTDEIVK dvkqt TF_HUMAN : 49- 97: ltwks TNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTDEIVK dvkqt TF_MOUSE : 43- 91: ltwis TDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTDEIVK dvtwa TF_MOUSE : 43- 91: ltwis TDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTDEIVK dvtwa TF_RABIT : 47- 95: ltwks TNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTDEVVK dvgqt TF_RAT : 44- 92: ltwis TDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTDEIVK dvnwt TF_RAT : 44- 92: ltwis TDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTDEIVK dvnwt I 9: 154.4133 5( 5) S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V Occurences: 5(5) TF_BOVIN : 48- 96: nitwk STNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTDEIV knvre TF_BOVIN : 48- 96: nitwk STNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTDEIV knvre TF_HUMAN : 48- 96: nltwk STNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTDEIV kdvkq TF_HUMAN : 48- 96: nltwk STNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTDEIV kdvkq TF_MOUSE : 42- 90: nltwi STDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTDEIV kdvtw TF_MOUSE : 42- 90: nltwi STDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTDEIV kdvtw TF_RABIT : 46- 94: nltwk STNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTDEVV kdvgq TF_RAT : 43- 91: nltwi STDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTDEIV kdvnw TF_RAT : 43- 91: nltwi STDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTDEIV kdvnw J 10: 154.3066 5( 5) N-x-T-x(1,2)-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D-[LV]-T Occurences: 5(5) TF_BOVIN : 43- 92: vvvay NiTwkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECDVT deivk TF_HUMAN : 43- 92: tvaay NlTwkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECDLT deivk TF_MOUSE : 37- 86: pekaf NlTwiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECDLT deivk TF_RABIT : 41- 90: tgray NlTwkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECDLT devvk TF_RAT : 38- 87: pgkaf NlTwiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECDLT deivk K 11: 153.0069 5( 5) T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L-x-Y-x-[IL] Occurences: 5(5) TF_BOVIN : 135- 184: tpyle TnLGQPTIQsFEQVGtKLnVTVqDArTLVRaNSAFLSLRDVFGkDLnYtL yywka TF_HUMAN : 138- 187: tpyle TnLGQPTIQsFEQVGtKVnVTVeDErTLVRrNNTFLSLRDVFGkDLiYtL yywks TF_MOUSE : 138- 187: lpyrd TnLGQPVIQqFEQDGrKLnVVVkDSlTLVRkNGTFLTLRQVFGkDLgYiI tyrkg TF_RABIT : 136- 185: tpyld TnLGQPTIQsFEQVGtKLnVTVqDArTLVRrNGTFLSLRAVFGkDLnYtL yywra TF_RAT : 139- 188: lpyrd TkIGQPVIQkYEQGGtKLkVTVkDSfTLVRkNGTFLTLRQVFGnDLgYiL tyrkd L 12: 152.8909 5( 5) Y-x-[DE]-T-x-[IL]-G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L Occurences: 5(5) TF_BOVIN : 132- 180: peftp YlETnLGQPTIQsFEQVGtKLnVTVqDArTLVRaNSAFLSLRDVFGkDL nytly TF_HUMAN : 135- 183: peftp YlETnLGQPTIQsFEQVGtKVnVTVeDErTLVRrNNTFLSLRDVFGkDL iytly TF_MOUSE : 135- 183: pkflp YrDTnLGQPVIQqFEQDGrKLnVVVkDSlTLVRkNGTFLTLRQVFGkDL gyiit TF_RABIT : 133- 181: peftp YlDTnLGQPTIQsFEQVGtKLnVTVqDArTLVRrNGTFLSLRAVFGkDL nytly TF_RAT : 136- 184: rkflp YrDTkIGQPVIQkYEQGGtKLkVTVkDSfTLVRkNGTFLTLRQVFGnDL gyilt M 13: 151.6229 5( 5) N-x-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D Occurences: 5(5) TF_BOVIN : 43- 90: vvvay NiTWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECD vtdei TF_HUMAN : 43- 90: tvaay NlTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECD ltdei TF_MOUSE : 37- 84: pekaf NlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECD ltdei TF_RABIT : 41- 88: tgray NlTWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECD ltdev TF_RAT : 38- 85: pgkaf NlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECD ltdei N 14: 151.1884 5( 5) W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E Occurences: 5(5) TF_BOVIN : 46- 94: aynit WkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTDE ivknv TF_BOVIN : 46- 94: aynit WkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTDE ivknv TF_HUMAN : 46- 94: aynlt WkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTDE ivkdv TF_HUMAN : 46- 94: aynlt WkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTDE ivkdv TF_MOUSE : 40- 88: afnlt WiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTDE ivkdv TF_MOUSE : 40- 88: afnlt WiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTDE ivkdv TF_RABIT : 44- 92: aynlt WkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTDE vvkdv TF_RAT : 41- 89: afnlt WiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTDE ivkdv TF_RAT : 41- 89: afnlt WiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTDE ivkdv O 15: 151.1884 5( 5) T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D Occurences: 5(5) TF_BOVIN : 45- 93: vayni TWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTD eivkn TF_BOVIN : 45- 93: vayni TWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTD eivkn TF_HUMAN : 45- 93: aaynl TWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTD eivkd TF_HUMAN : 45- 93: aaynl TWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTD eivkd TF_MOUSE : 39- 87: kafnl TWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTD eivkd TF_MOUSE : 39- 87: kafnl TWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTD eivkd TF_RABIT : 43- 91: raynl TWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTD evvkd TF_RAT : 40- 88: kafnl TWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTD eivkd TF_RAT : 40- 88: kafnl TWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTD eivkd P 16: 151.1229 5( 5) A-x(2,3)-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-[AT]-[DEN]-T-E-C-D Occurences: 5(5) TF_BOVIN : 41- 90: tdvvv AyniTWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTTNTECD vtdei TF_HUMAN : 41- 90: tntva AynlTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTTDTECD ltdei TF_MOUSE : 35- 84: gipek AfnlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTTDTECD ltdei TF_RABIT : 39- 88: dttgr AynlTWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTAETECD ltdev TF_RAT : 36- 85: tppgk AfnlTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTTDTECD ltdei Q 17: 150.3058 5( 5) A-[FY]-N-[IL]-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C Occurences: 5(5) TF_BOVIN : 41- 89: tdvvv AYNITWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--EC dvtde TF_BOVIN : 41- 89: tdvvv AYNITWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntEC dvtde TF_HUMAN : 41- 89: tntva AYNLTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--EC dltde TF_HUMAN : 41- 89: tntva AYNLTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtEC dltde TF_MOUSE : 35- 83: gipek AFNLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--EC dltde TF_MOUSE : 35- 83: gipek AFNLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtEC dltde TF_RABIT : 39- 87: dttgr AYNLTWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--EC dltde TF_RAT : 36- 84: tppgk AFNLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--EC dltde TF_RAT : 36- 84: tppgk AFNLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtEC dltde R 18: 150.2433 5( 5) K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D-[LV]-T-D-E-[IV]-V-K-[DN]-V Occurences: 5(5) TF_BOVIN : 52- 99: kstnf KTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECDVTDEIVKNV retyl TF_BOVIN : 52- 99: kstnf KTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECDVTDEIVKNV retyl TF_HUMAN : 52- 99: kstnf KTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECDLTDEIVKDV kqtyl TF_HUMAN : 52- 99: kstnf KTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECDLTDEIVKDV kqtyl TF_MOUSE : 46- 93: istdf KTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECDLTDEIVKDV twaye TF_MOUSE : 46- 93: istdf KTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECDLTDEIVKDV twaye TF_RABIT : 50- 97: kstnf KTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECDLTDEVVKDV gqtym TF_RAT : 47- 94: istdf KTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECDLTDEIVKDV nwtye TF_RAT : 47- 94: istdf KTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECDLTDEIVKDV nwtye S 19: 149.1037 5( 5) G-Q-P-[TV]-I-Q-x-[FY]-E-Q-[DGV]-G-x-K-[LV]-x-V-[TV]-V-x-D-[AES]-x-T-L-V-R-x-N-[GNS]-[AT]-F-L-[ST]-L-R-[ADQ]-V-F-G-x-D-L-x-Y-x(0,2)-T-x(0,1)-Y Occurences: 5(5) TF_BOVIN : 138- 185: letnl GQPTIQsFEQVGtKLnVTVqDArTLVRaNSAFLSLRDVFGkDLnY--TlY ywkas TF_HUMAN : 141- 188: letnl GQPTIQsFEQVGtKVnVTVeDErTLVRrNNTFLSLRDVFGkDLiY--TlY ywkss TF_MOUSE : 141- 189: rdtnl GQPVIQqFEQDGrKLnVVVkDSlTLVRkNGTFLTLRQVFGkDLgYiiT-Y rkgss TF_RABIT : 139- 186: ldtnl GQPTIQsFEQVGtKLnVTVqDArTLVRrNGTFLSLRAVFGkDLnY--TlY ywras TF_RAT : 142- 190: rdtki GQPVIQkYEQGGtKLkVTVkDSfTLVRkNGTFLTLRQVFGnDLgYilT-Y rkdss T 20: 147.1213 5( 5) N-[IL]-T-W-x-S-T-[DN]-F-K-T-I-L-E-W-[EQ]-P-K-[PS]-x-[DN]-x-[TV]-Y-T-V-Q-I-S-[DPT]-[KR]-x(2)-[DN]-W-K-x-K-C-x(2)-T-x(0,2)-T-x(0,2)-E-C-D Occurences: 5(5) TF_BOVIN : 43- 90: vvvay NITWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyTtnT--ECD vtdei TF_BOVIN : 43- 90: vvvay NITWkSTNFKTILEWEPKPiNhVYTVQISPRlgNWKnKCfyT--TntECD vtdei TF_HUMAN : 43- 90: tvaay NLTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyTtdT--ECD ltdei TF_HUMAN : 43- 90: tvaay NLTWkSTNFKTILEWEPKPvNqVYTVQISTKsgDWKsKCfyT--TdtECD ltdei TF_MOUSE : 37- 84: pekaf NLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsTtdT--ECD ltdei TF_MOUSE : 37- 84: pekaf NLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKnKCfsT--TdtECD ltdei TF_RABIT : 41- 88: tgray NLTWkSTNFKTILEWEPKSiDhVYTVQISTRleNWKsKCflTaeT--ECD ltdev TF_RAT : 38- 85: pgkaf NLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgTtdT--ECD ltdei TF_RAT : 38- 85: pgkaf NLTWiSTDFKTILEWQPKPtNyTYTVQISDRsrNWKyKCtgT--TdtECD ltdei Number of patterns evaluated by Pratt:38445 Total running time: 7 seconds