------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file TIMP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TIMP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TIM1_BOVIN 207 TIM1_HUMAN 207 TIM1_MOUSE 205 TIM1_PIG 207 TIM1_RABIT 206 TIM1_RAT 217 TIM2_BOVIN 220 TIM2_HUMAN 220 TIM2_MOUSE 220 TIM2_RAT 220 TIM3_CHICK 212 TIM3_HUMAN 211 TIM3_MOUSE 211 Pratt run started at Thu Feb 6 21:26:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 73.5609 19( 13) L-x(3,4)-A-x(1,3)-A-C-x-C-x-P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 2: 69.8909 13( 13) A-x(1,3)-A-C-x-C-x-P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 3: 66.7208 13( 13) A-C-x-C-x-P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 4: 65.7208 20( 13) A-x(0,2)-C-x-C-x-P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 5: 60.5508 13( 13) A-C-x-C-x-P-x(0,2)-P-x(0,2)-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 6: 58.3807 13( 13) C-x(3)-P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 7: 57.3807 18( 13) C-x(2,3)-P-x(0,1)-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 8: 57.3807 13( 13) C-x(1,2)-P-x(0,1)-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 9: 56.3807 13( 13) C-x-C-x-P-x(0,2)-P-x(0,2)-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 10: 54.2107 13( 13) P-x-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 11: 53.7107 18( 13) P-x(0,1)-H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 12: 52.2107 13( 13) C-x-P-x(0,2)-P-x(0,2)-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 13: 50.0406 13( 13) H-P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 14: 48.0406 18( 13) P-x(0,2)-P-x(0,2)-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 15: 45.8706 13( 13) P-Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 16: 45.3706 13( 13) Y-x(2)-G-C-x(1,2)-C-x(4)-C-x(3)-P-C-x(3)-S-x(3)-C-x-W-x-D 17: 41.7005 13( 13) Q-x-A-F-C-x(2)-D-x-V-I-R-A-K 18: 41.2005 13( 13) G-C-x(1,2)-C-x(4)-C-x(3)-P-C-x(3)-S-x(3)-C-x-W-x-D 19: 37.5305 13( 13) A-F-C-x(2)-D-x-V-I-R-A-K 20: 36.5305 15( 13) G-x(1,3)-C-x(4)-C-x(3)-P-C-x(3)-S-x(3)-C-x-W-x-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 104.8905 19( 13) L-x(3,4)-A-x(1,3)-A-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] B 2: 101.2205 13( 13) A-x(1,3)-A-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] C 3: 97.0504 20( 13) A-x(0,2)-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] D 4: 94.8750 13( 13) A-C-x-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] E 5: 91.8804 13( 13) A-C-[ST]-C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] F 6: 87.7103 13( 13) C-[ST]-C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] G 7: 83.9378 13( 13) C-x(3)-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] H 8: 82.9378 18( 13) C-x(2,3)-P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] I 9: 82.9378 13( 13) C-x(1,2)-P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] J 10: 80.3649 13( 13) C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] K 11: 79.7678 13( 13) P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] L 12: 79.2678 18( 13) P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] M 13: 75.5977 13( 13) H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] N 14: 73.5977 18( 13) P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] O 15: 71.4277 13( 13) P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] P 16: 67.2576 13( 13) Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Q 17: 65.0088 13( 13) Y-x(2)-G-C-x(1,2)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D R 18: 60.8387 13( 13) G-C-x(1,2)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D S 19: 60.4808 13( 13) A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] T 20: 56.1687 15( 13) G-x(1,3)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 104.8905 19( 13) L-x(3,4)-A-x(1,3)-A-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 19(13) TIM1_BOVIN : 14- 56: sgill LlwltApsrACTCVPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 15- 56: gilll Lwlt-ApsrACTCVPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 14- 56: sgill LlwliApsrACTCVPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 15- 56: gilll Lwli-ApsrACTCVPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 15- 57: sgill LlsliAsskACSCAPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 16- 57: gilll Lsli-AsskACSCAPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 14- 56: sgill LlwltApsrACTCVPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 15- 56: gilll Lwlt-ApsrACTCVPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 14- 56: ssmll LlwlvApsrACTCVPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 15- 56: smlll Lwlv-ApsrACTCVPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 14- 56: sgill LlsliAsskACSCAPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM1_RAT : 15- 56: gilll Lsli-AsskACSCAPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 20- 59: lllgt Llpr-Ad--ACSCSPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 20- 59: lllat Llrp-Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 20- 59: lllas Lvrp-Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 20- 59: lllat Llrp-Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 17- 57: lcsws LrdlvAe--ACTCVPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 16- 56: lgsws LgdwgAe--ACTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 16- 56: lscws LghwgAe--ACTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv B 2: 101.2205 13( 13) A-x(1,3)-A-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 19- 56: llwlt ApsrACTCVPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 19- 56: llwli ApsrACTCVPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 20- 57: llsli AsskACSCAPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 19- 56: llwlt ApsrACTCVPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 19- 56: llwlv ApsrACTCVPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 19- 56: llsli AsskACSCAPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 24- 59: tllpr Ad--ACSCSPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 24- 59: tllrp Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 24- 59: slvrp Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 24- 59: tllrp Ad--ACSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 22- 57: lrdlv Ae--ACTCVPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 21- 56: lgdwg Ae--ACTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 21- 56: lghwg Ae--ACTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv C 3: 97.0504 20( 13) A-x(0,2)-C-[ST]-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 20(13) TIM1_BOVIN : 23- 56: tapsr A--CTCVPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 23- 56: iapsr A--CTCVPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 24- 57: iassk A--CSCAPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 23- 56: tapsr A--CTCVPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 23- 56: vapsr A--CTCVPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 23- 56: iassk A--CSCAPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 24- 59: tllpr AdaCSCSPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_BOVIN : 26- 59: lprad A--CSCSPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 24- 59: tllrp AdaCSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_HUMAN : 26- 59: lrpad A--CSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 24- 59: slvrp AdaCSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 26- 59: vrpad A--CSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 24- 59: tllrp AdaCSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 26- 59: lrpad A--CSCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 22- 57: lrdlv AeaCTCVPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_CHICK : 24- 57: dlvae A--CTCVPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 21- 56: lgdwg AeaCTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_HUMAN : 23- 56: dwgae A--CTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 21- 56: lghwg AeaCTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 23- 56: hwgae A--CTCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv D 4: 94.8750 13( 13) A-C-x-C-[ASV]-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 23- 56: tapsr ACtCVPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 23- 56: iapsr ACtCVPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 24- 57: iassk ACsCAPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 23- 56: tapsr ACtCVPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 23- 56: vapsr ACtCVPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 23- 56: iassk ACsCAPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 26- 59: lprad ACsCSPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 26- 59: lrpad ACsCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 26- 59: vrpad ACsCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 26- 59: lrpad ACsCSPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 24- 57: dlvae ACtCVPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 23- 56: dwgae ACtCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 23- 56: hwgae ACtCSPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv E 5: 91.8804 13( 13) A-C-[ST]-C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 23- 56: tapsr ACTCVPphP--QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 23- 56: tapsr ACTCVP--PhpQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 23- 56: iapsr ACTCVPphP--QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 23- 56: iapsr ACTCVP--PhpQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 24- 57: iassk ACSCAPphP--QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 24- 57: iassk ACSCAP--PhpQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 23- 56: tapsr ACTCVPphP--QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 23- 56: tapsr ACTCVP--PhpQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 23- 56: vapsr ACTCVPphP--QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 23- 56: vapsr ACTCVP--PhpQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 23- 56: iassk ACSCAPthP--QTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 26- 59: lprad ACSCSPvhP--QQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 26- 59: lrpad ACSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 26- 59: vrpad ACSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 26- 59: lrpad ACSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 24- 57: dlvae ACTCVPihP--QDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 23- 56: dwgae ACTCSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 23- 56: hwgae ACTCSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv F 6: 87.7103 13( 13) C-[ST]-C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 24- 56: apsra CTCVPphP--QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 24- 56: apsra CTCVP--PhpQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 24- 56: apsra CTCVPphP--QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 24- 56: apsra CTCVP--PhpQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 25- 57: asska CSCAPphP--QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 25- 57: asska CSCAP--PhpQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 24- 56: apsra CTCVPphP--QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 24- 56: apsra CTCVP--PhpQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 24- 56: apsra CTCVPphP--QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 24- 56: apsra CTCVP--PhpQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 24- 56: asska CSCAPthP--QTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 27- 59: prada CSCSPvhP--QQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 27- 59: rpada CSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 27- 59: rpada CSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 27- 59: rpada CSCSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 25- 57: lvaea CTCVPihP--QDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 24- 56: wgaea CTCSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 24- 56: wgaea CTCSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv G 7: 83.9378 13( 13) C-x(3)-P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 24- 56: apsra CtcvPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 24- 56: apsra CtcvPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 25- 57: asska CscaPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 24- 56: apsra CtcvPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 24- 56: apsra CtcvPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 24- 56: asska CscaPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 27- 59: prada CscsPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 25- 57: lvaea CtcvPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 24- 56: wgaea CtcsPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 24- 56: wgaea CtcsPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv H 8: 82.9378 18( 13) C-x(2,3)-P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 18(13) TIM1_BOVIN : 24- 56: apsra CtcvPpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 26- 56: sract Cvp-P-HPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 24- 56: apsra CtcvPpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 26- 56: sract Cvp-P-HPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 25- 57: asska CscaPpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 27- 57: skacs Cap-P-HPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 24- 56: apsra CtcvPpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 26- 56: sract Cvp-P-HPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 24- 56: apsra CtcvPpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 26- 56: sract Cvp-P-HPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 24- 56: asska CscaPtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 27- 59: prada CscsPvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 27- 59: rpada CscsPvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 25- 57: lvaea CtcvPiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 24- 56: wgaea CtcsPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 24- 56: wgaea CtcsPsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv I 9: 82.9378 13( 13) C-x(1,2)-P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 26- 56: sract CvpP-HPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 26- 56: sract Cv-PpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 26- 56: sract CvpP-HPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 26- 56: sract Cv-PpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 27- 57: skacs CapP-HPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 27- 57: skacs Ca-PpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 26- 56: sract CvpP-HPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 26- 56: sract Cv-PpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 26- 56: sract CvpP-HPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 26- 56: sract Cv-PpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 26- 56: skacs Ca-PtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 29- 59: adacs Cs-PvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 29- 59: adacs Cs-PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 29- 59: adacs Cs-PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 29- 59: adacs Cs-PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 27- 57: aeact Cv-PiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 26- 56: aeact Cs-PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 26- 56: aeact Cs-PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv J 10: 80.3649 13( 13) C-[ASV]-P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 26- 56: sract CVPphP--QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 26- 56: sract CVP--PhpQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 26- 56: sract CVPphP--QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 26- 56: sract CVP--PhpQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 27- 57: skacs CAPphP--QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 27- 57: skacs CAP--PhpQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 26- 56: sract CVPphP--QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 26- 56: sract CVP--PhpQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 26- 56: sract CVPphP--QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 26- 56: sract CVP--PhpQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 26- 56: skacs CAPthP--QTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 29- 59: adacs CSPvhP--QQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 29- 59: adacs CSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 29- 59: adacs CSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 29- 59: adacs CSPvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 27- 57: aeact CVPihP--QDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 26- 56: aeact CSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 26- 56: aeact CSPshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv K 11: 79.7678 13( 13) P-x-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 28- 56: actcv PpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 28- 56: actcv PpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 29- 57: acsca PpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 28- 56: actcv PpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 28- 56: actcv PpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 28- 56: acsca PtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 31- 59: acscs PvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 29- 57: actcv PiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 28- 56: actcs PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 28- 56: actcs PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv L 12: 79.2678 18( 13) P-x(0,1)-H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 18(13) TIM1_BOVIN : 28- 56: actcv PpHPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 29- 56: ctcvp P-HPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 28- 56: actcv PpHPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 29- 56: ctcvp P-HPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 29- 57: acsca PpHPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 30- 57: cscap P-HPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 28- 56: actcv PpHPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 29- 56: ctcvp P-HPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 28- 56: actcv PpHPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 29- 56: ctcvp P-HPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 28- 56: acsca PtHPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 31- 59: acscs PvHPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 31- 59: acscs PvHPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 29- 57: actcv PiHPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 28- 56: actcs PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 28- 56: actcs PsHPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv M 13: 75.5977 13( 13) H-P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 30- 56: tcvpp HPQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 30- 56: tcvpp HPQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 31- 57: scapp HPQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 30- 56: tcvpp HPQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 30- 56: tcvpp HPQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 30- 56: scapt HPQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 33- 59: scspv HPQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 33- 59: scspv HPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 33- 59: scspv HPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 33- 59: scspv HPQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 31- 57: tcvpi HPQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 30- 56: tcsps HPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 30- 56: tcsps HPQDAFCNSDIVIRAKvVGkklVkeGP fgtlv N 14: 73.5977 18( 13) P-x(0,2)-P-x(0,2)-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 18(13) TIM1_BOVIN : 28- 56: actcv PphP--QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 28- 56: actcv P--PhpQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_BOVIN : 29- 56: ctcvp Ph-P--QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 28- 56: actcv PphP--QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 28- 56: actcv P--PhpQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_HUMAN : 29- 56: ctcvp Ph-P--QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 29- 57: acsca PphP--QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 29- 57: acsca P--PhpQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_MOUSE : 30- 57: cscap Ph-P--QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 28- 56: actcv PphP--QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 28- 56: actcv P--PhpQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_PIG : 29- 56: ctcvp Ph-P--QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 28- 56: actcv PphP--QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 28- 56: actcv P--PhpQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RABIT : 29- 56: ctcvp Ph-P--QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 28- 56: acsca PthP--QTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 31- 59: acscs PvhP--QQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 31- 59: acscs PvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 31- 59: acscs PvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 31- 59: acscs PvhP--QQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 29- 57: actcv PihP--QDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 28- 56: actcs PshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 28- 56: actcs PshP--QDAFCNSDIVIRAKvVGkklVkeGP fgtlv O 15: 71.4277 13( 13) P-Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 31- 56: cvpph PQTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 31- 56: cvpph PQTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 32- 57: capph PQTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 31- 56: cvpph PQTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 31- 56: cvpph PQTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 31- 56: capth PQTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 34- 59: cspvh PQQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 34- 59: cspvh PQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 34- 59: cspvh PQQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 34- 59: cspvh PQQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 32- 57: cvpih PQDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 31- 56: cspsh PQDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 31- 56: cspsh PQDAFCNSDIVIRAKvVGkklVkeGP fgtlv P 16: 67.2576 13( 13) Q-[DQT]-A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 32- 56: vpphp QTAFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 32- 56: vpphp QTAFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 33- 57: apphp QTAFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 32- 56: vpphp QTAFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 32- 56: vpphp QTAFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 32- 56: apthp QTAFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 35- 59: spvhp QQAFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 35- 59: spvhp QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 35- 59: spvhp QQAFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 35- 59: spvhp QQAFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 33- 57: vpihp QDAFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 32- 56: spshp QDAFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 32- 56: spshp QDAFCNSDIVIRAKvVGkklVkeGP fgtlv Q 17: 65.0088 13( 13) Y-x(2)-G-C-x(1,2)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D Occurences: 13(13) TIM1_BOVIN : 143- 172: gftkt YaaGCeeCtVfpCssIPCkLQSdTHCLWtD qlltg TIM1_HUMAN : 143- 172: gftkt YtvGCeeCtVfpClsIPCkLQSgTHCLWtD qllqg TIM1_MOUSE : 144- 173: afskt YsaGCgvCtVfpClsIPCkLESdTHCLWtD qvlvg TIM1_PIG : 143- 172: gftei YaaGCeeCtVfpCtsIPCkLQSdTHCLWtD qlltg TIM1_RABIT : 143- 172: gftkt YaaGCdmCtVfaCasIPChLESdTHCLWtD sslgs TIM1_RAT : 143- 172: afvkt YsaGCgvCtVfpCsaIPCkLESdSHCLWtD qilmg TIM2_BOVIN : 148- 176: slnhr YqmGCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_HUMAN : 148- 176: slnhr YqmGCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_MOUSE : 148- 176: slnhr YqmGCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_RAT : 148- 176: slnhr YqmGCq-CkItrCpmIPCyISSpDECLWmD wvtek TIM3_CHICK : 140- 168: glnhr YhlGCg-CkIrpCyyLPCfATSkNECIWtD mlsnf TIM3_HUMAN : 139- 167: glnyr YhlGCn-CkIksCyyLPCfVTSkNECLWtD mlsnf TIM3_MOUSE : 139- 167: glnyr YhlGCn-CkIksCyyLPCfVTSkNECLWtD mlsnf R 18: 60.8387 13( 13) G-C-x(1,2)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D Occurences: 13(13) TIM1_BOVIN : 146- 172: ktyaa GCeeCtVfpCssIPCkLQSdTHCLWtD qlltg TIM1_HUMAN : 146- 172: ktytv GCeeCtVfpClsIPCkLQSgTHCLWtD qllqg TIM1_MOUSE : 147- 173: ktysa GCgvCtVfpClsIPCkLESdTHCLWtD qvlvg TIM1_PIG : 146- 172: eiyaa GCeeCtVfpCtsIPCkLQSdTHCLWtD qlltg TIM1_RABIT : 146- 172: ktyaa GCdmCtVfaCasIPChLESdTHCLWtD sslgs TIM1_RAT : 146- 172: ktysa GCgvCtVfpCsaIPCkLESdSHCLWtD qilmg TIM2_BOVIN : 151- 176: hryqm GCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_HUMAN : 151- 176: hryqm GCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_MOUSE : 151- 176: hryqm GCe-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_RAT : 151- 176: hryqm GCq-CkItrCpmIPCyISSpDECLWmD wvtek TIM3_CHICK : 143- 168: hryhl GCg-CkIrpCyyLPCfATSkNECIWtD mlsnf TIM3_HUMAN : 142- 167: yryhl GCn-CkIksCyyLPCfVTSkNECLWtD mlsnf TIM3_MOUSE : 142- 167: yryhl GCn-CkIksCyyLPCfVTSkNECLWtD mlsnf S 19: 60.4808 13( 13) A-F-C-[NS]-[AS]-D-[ILV]-V-I-R-A-K-x-[MV]-[GNS]-x(3)-[FIMV]-x(2)-[GT]-[ANPT] Occurences: 13(13) TIM1_BOVIN : 34- 56: phpqt AFCNSDVVIRAKfVGtaeVneTA lyqry TIM1_HUMAN : 34- 56: phpqt AFCNSDLVIRAKfVGtpeVnqTT lyqry TIM1_MOUSE : 35- 57: phpqt AFCNSDLVIRAKfMGspeIneTT lyqry TIM1_PIG : 34- 56: phpqt AFCSSDLVIRAKfVGapeFnqTA syqry TIM1_RABIT : 34- 56: phpqt AFCNSDLVIRAKfVGapeVnhTT lyqry TIM1_RAT : 34- 56: thpqt AFCNSDLVIRAKfMGspeIieTT lyqry TIM2_BOVIN : 37- 59: vhpqq AFCNADIVIRAKaVNkkeVdsGN diygn TIM2_HUMAN : 37- 59: vhpqq AFCNADVVIRAKaVSekeVdsGN diygn TIM2_MOUSE : 37- 59: vhpqq AFCNADVVIRAKaVSekeVdsGN diygn TIM2_RAT : 37- 59: vhpqq AFCNADVVIRAKaVSekeVdsGN diygn TIM3_CHICK : 35- 57: ihpqd AFCNSDIVIRAKvVGkklMkdGP fgtmr TIM3_HUMAN : 34- 56: shpqd AFCNSDIVIRAKvVGkklVkeGP fgtlv TIM3_MOUSE : 34- 56: shpqd AFCNSDIVIRAKvVGkklVkeGP fgtlv T 20: 56.1687 15( 13) G-x(1,3)-C-x-[IV]-x(2)-C-x(2)-[IL]-P-C-x-[AILV]-[EQST]-S-x-[DNST]-[EH]-C-[IL]-W-x-D Occurences: 15(13) TIM1_BOVIN : 146- 172: ktyaa GceeCtVfpCssIPCkLQSdTHCLWtD qlltg TIM1_HUMAN : 146- 172: ktytv GceeCtVfpClsIPCkLQSgTHCLWtD qllqg TIM1_MOUSE : 147- 173: ktysa GcgvCtVfpClsIPCkLESdTHCLWtD qvlvg TIM1_MOUSE : 149- 173: ysagc Gv--CtVfpClsIPCkLESdTHCLWtD qvlvg TIM1_PIG : 146- 172: eiyaa GceeCtVfpCtsIPCkLQSdTHCLWtD qlltg TIM1_RABIT : 146- 172: ktyaa GcdmCtVfaCasIPChLESdTHCLWtD sslgs TIM1_RAT : 146- 172: ktysa GcgvCtVfpCsaIPCkLESdSHCLWtD qilmg TIM1_RAT : 148- 172: ysagc Gv--CtVfpCsaIPCkLESdSHCLWtD qilmg TIM2_BOVIN : 151- 176: hryqm Gce-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_HUMAN : 151- 176: hryqm Gce-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_MOUSE : 151- 176: hryqm Gce-CkItrCpmIPCyISSpDECLWmD wvtek TIM2_RAT : 151- 176: hryqm Gcq-CkItrCpmIPCyISSpDECLWmD wvtek TIM3_CHICK : 143- 168: hryhl Gcg-CkIrpCyyLPCfATSkNECIWtD mlsnf TIM3_HUMAN : 142- 167: yryhl Gcn-CkIksCyyLPCfVTSkNECLWtD mlsnf TIM3_MOUSE : 142- 167: yryhl Gcn-CkIksCyyLPCfVTSkNECLWtD mlsnf Number of patterns evaluated by Pratt:3688 Total running time: 2 seconds