------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file THYMOSIN_B4 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename THYMOSIN_B4.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TYB0_HUMAN 43 TYB4_HUMAN 43 TYB4_MOUSE 50 TYB4_RABIT 43 TYB4_XENLA 43 TYB9_BOVIN 41 TYB9_PIG 41 TYBA_ONCMY 41 TYBB_LATJA 43 TYBB_ONCMY 42 Pratt run started at Thu Feb 6 21:26:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 116.7614 10( 10) D-K-P-x(3)-E-x(3)-F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 2: 112.5914 10( 10) K-P-x(3)-E-x(3)-F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 3: 108.4213 10( 10) P-x(3)-E-x(3)-F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 4: 106.9213 10( 10) D-x(2,4)-E-x(3,4)-F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 5: 104.2513 10( 10) E-x(3)-F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 6: 100.0812 10( 10) F-D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 7: 95.9112 10( 10) D-K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 8: 91.7411 10( 10) K-x-K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 9: 87.5711 10( 10) K-L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 10: 83.4010 10( 10) L-K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 11: 79.2310 10( 10) K-K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 12: 75.0609 10( 10) K-T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 13: 70.8909 10( 10) T-E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 14: 66.7208 10( 10) E-T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 15: 62.5508 10( 10) T-Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 16: 58.3807 10( 10) Q-E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 17: 54.2107 10( 10) E-K-N-x-L-P-x-K-E-T-I-E-Q-E-K 18: 50.0406 10( 10) K-N-x-L-P-x-K-E-T-I-E-Q-E-K 19: 45.8706 10( 10) N-x-L-P-x-K-E-T-I-E-Q-E-K 20: 41.7005 10( 10) L-P-x-K-E-T-I-E-Q-E-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 141.7107 10( 10) D-K-P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] B 2: 137.5407 10( 10) K-P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] C 3: 133.3706 10( 10) P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] D 4: 120.9325 10( 10) E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] E 5: 118.4792 10( 10) D-x(2,4)-E-x(3,4)-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] F 6: 111.6391 10( 10) F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] G 7: 107.4691 10( 10) D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] H 8: 103.2990 10( 10) K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] I 9: 96.5246 10( 10) K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] J 10: 92.3546 10( 10) L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] K 11: 88.1845 10( 10) K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] L 12: 84.0145 10( 10) K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] M 13: 79.8444 10( 10) T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] N 14: 75.6744 10( 10) E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] O 15: 71.5043 10( 10) T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] P 16: 67.3343 10( 10) Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Q 17: 63.1642 10( 10) E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] R 18: 58.9942 10( 10) K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] S 19: 54.8241 10( 10) N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] T 20: 47.4803 10( 10) L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 141.7107 10( 10) D-K-P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 2- 40: a DKPDMGEIAsFDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 2- 40: s DKPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 9- 47: patms DKPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 2- 40: a DKPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 2- 40: s DKPDMAEIEkFDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 2- 40: a DKPDLGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 2- 40: a DKPDMGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 2- 40: s DKPNLEEVAsFDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 2- 40: s DKPDISEVTsFDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 2- 40: s DKPDLAEVSnFDKTKLKKTETQEKNPLPTKETIEQEKqA ta B 2: 137.5407 10( 10) K-P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 3- 40: ad KPDMGEIAsFDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 3- 40: sd KPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 10- 47: atmsd KPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 3- 40: ad KPDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 3- 40: sd KPDMAEIEkFDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 3- 40: ad KPDLGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 3- 40: ad KPDMGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 3- 40: sd KPNLEEVAsFDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 3- 40: sd KPDISEVTsFDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 3- 40: sd KPDLAEVSnFDKTKLKKTETQEKNPLPTKETIEQEKqA ta C 3: 133.3706 10( 10) P-[DN]-[ILM]-[AEGS]-E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 4- 40: adk PDMGEIAsFDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 4- 40: sdk PDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 11- 47: tmsdk PDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 4- 40: adk PDMAEIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 4- 40: sdk PDMAEIEkFDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 4- 40: adk PDLGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 4- 40: adk PDMGEINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 4- 40: sdk PNLEEVAsFDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 4- 40: sdk PDISEVTsFDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 4- 40: sdk PDLAEVSnFDKTKLKKTETQEKNPLPTKETIEQEKqA ta D 4: 120.9325 10( 10) E-[IV]-[AENST]-x-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 8- 40: kpdmg EIAsFDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 8- 40: kpdma EIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 15- 47: kpdma EIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 8- 40: kpdma EIEkFDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 8- 40: kpdma EIEkFDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 8- 40: kpdlg EINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 8- 40: kpdmg EINsFDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 8- 40: kpnle EVAsFDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 8- 40: kpdis EVTsFDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 8- 40: kpdla EVSnFDKTKLKKTETQEKNPLPTKETIEQEKqA ta E 5: 118.4792 10( 10) D-x(2,4)-E-x(3,4)-F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 5- 40: adkp Dmg--Eias-FDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 5- 40: sdkp Dma--Eiek-FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 12- 47: msdkp Dma--Eiek-FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 5- 40: adkp Dma--Eiek-FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 5- 40: sdkp Dma--Eiek-FDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 5- 40: adkp Dlg--Eins-FDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 5- 40: adkp Dmg--Eins-FDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 2- 40: s DkpnlEevasFDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 5- 40: sdkp Dis--Evts-FDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 5- 40: sdkp Dla--Evsn-FDKTKLKKTETQEKNPLPTKETIEQEKqA ta F 6: 111.6391 10( 10) F-D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 12- 40: geias FDKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 12- 40: aeiek FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 19- 47: aeiek FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 12- 40: aeiek FDKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 12- 40: aeiek FDKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 12- 40: geins FDKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 12- 40: geins FDKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 12- 40: eevas FDKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 12- 40: sevts FDKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 12- 40: aevsn FDKTKLKKTETQEKNPLPTKETIEQEKqA ta G 7: 107.4691 10( 10) D-K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 13- 40: eiasf DKAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 13- 40: eiekf DKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 20- 47: eiekf DKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 13- 40: eiekf DKSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 13- 40: eiekf DKAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 13- 40: einsf DKAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 13- 40: einsf DKAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 13- 40: evasf DKTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 13- 40: evtsf DKTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 13- 40: evsnf DKTKLKKTETQEKNPLPTKETIEQEKqA ta H 8: 103.2990 10( 10) K-[AST]-K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 14- 40: iasfd KAKLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 14- 40: iekfd KSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 21- 47: iekfd KSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 14- 40: iekfd KSKLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 14- 40: iekfd KAKLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 14- 40: insfd KAKLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 14- 40: insfd KAKLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 14- 40: vasfd KTKLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 14- 40: vtsfd KTKLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 14- 40: vsnfd KTKLKKTETQEKNPLPTKETIEQEKqA ta I 9: 96.5246 10( 10) K-L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 16- 40: sfdka KLKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 16- 40: kfdks KLKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 23- 47: kfdks KLKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 16- 40: kfdks KLKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 16- 40: kfdka KLKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 16- 40: sfdka KLKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 16- 40: sfdka KLKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 16- 40: sfdkt KLKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 16- 40: sfdkt KLKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 16- 40: nfdkt KLKKTETQEKNPLPTKETIEQEKqA ta J 10: 92.3546 10( 10) L-K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 17- 40: fdkak LKKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 17- 40: fdksk LKKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 24- 47: fdksk LKKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 17- 40: fdksk LKKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 17- 40: fdkak LKKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 17- 40: fdkak LKKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 17- 40: fdkak LKKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 17- 40: fdktk LKKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 17- 40: fdktk LKKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 17- 40: fdktk LKKTETQEKNPLPTKETIEQEKqA ta K 11: 88.1845 10( 10) K-K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 18- 40: dkakl KKTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 18- 40: dkskl KKTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 25- 47: dkskl KKTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 18- 40: dkskl KKTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 18- 40: dkakl KKTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 18- 40: dkakl KKTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 18- 40: dkakl KKTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 18- 40: dktkl KKTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 18- 40: dktkl KKTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 18- 40: dktkl KKTETQEKNPLPTKETIEQEKqA ta L 12: 84.0145 10( 10) K-T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 19- 40: kaklk KTETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 19- 40: ksklk KTETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 26- 47: ksklk KTETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 19- 40: ksklk KTETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 19- 40: kaklk KTETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 19- 40: kaklk KTETQEKNTLPTKETIEQEKqA k TYB9_PIG : 19- 40: kaklk KTETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 19- 40: ktklk KTETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 19- 40: ktklk KTETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 19- 40: ktklk KTETQEKNPLPTKETIEQEKqA ta M 13: 79.8444 10( 10) T-E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 20- 40: aklkk TETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 20- 40: sklkk TETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 27- 47: sklkk TETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 20- 40: sklkk TETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 20- 40: aklkk TETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 20- 40: aklkk TETQEKNTLPTKETIEQEKqA k TYB9_PIG : 20- 40: aklkk TETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 20- 40: tklkk TETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 20- 40: tklkk TETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 20- 40: tklkk TETQEKNPLPTKETIEQEKqA ta N 14: 75.6744 10( 10) E-T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 21- 40: klkkt ETQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 21- 40: klkkt ETQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 28- 47: klkkt ETQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 21- 40: klkkt ETQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 21- 40: klkkt ETQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 21- 40: klkkt ETQEKNTLPTKETIEQEKqA k TYB9_PIG : 21- 40: klkkt ETQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 21- 40: klkkt ETQEKNPLPTKETIEQEKqA s TYBB_LATJA : 21- 40: klkkt ETQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 21- 40: klkkt ETQEKNPLPTKETIEQEKqA ta O 15: 71.5043 10( 10) T-Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 22- 40: lkkte TQEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 22- 40: lkkte TQEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 29- 47: lkkte TQEKNPLPSKETIEQEKqA ges TYB4_RABIT : 22- 40: lkkte TQEKNPLPSKETIEQEKqA ges TYB4_XENLA : 22- 40: lkkte TQEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 22- 40: lkkte TQEKNTLPTKETIEQEKqA k TYB9_PIG : 22- 40: lkkte TQEKNTLPTKETIEQEKqA k TYBA_ONCMY : 22- 40: lkkte TQEKNPLPTKETIEQEKqA s TYBB_LATJA : 22- 40: lkkte TQEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 22- 40: lkkte TQEKNPLPTKETIEQEKqA ta P 16: 67.3343 10( 10) Q-E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 23- 40: kktet QEKNTLPTKETIEQEKrS eis TYB4_HUMAN : 23- 40: kktet QEKNPLPSKETIEQEKqA ges TYB4_MOUSE : 30- 47: kktet QEKNPLPSKETIEQEKqA ges TYB4_RABIT : 23- 40: kktet QEKNPLPSKETIEQEKqA ges TYB4_XENLA : 23- 40: kktet QEKNPLPSKETIEQEKqT ses TYB9_BOVIN : 23- 40: kktet QEKNTLPTKETIEQEKqA k TYB9_PIG : 23- 40: kktet QEKNTLPTKETIEQEKqA k TYBA_ONCMY : 23- 40: kktet QEKNPLPTKETIEQEKqA s TYBB_LATJA : 23- 40: kktet QEKNPLPSKETIEQEKaA ats TYBB_ONCMY : 23- 40: kktet QEKNPLPTKETIEQEKqA ta Q 17: 63.1642 10( 10) E-K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 24- 40: ktetq EKNTLPTKETIEQEKrS eis TYB4_HUMAN : 24- 40: ktetq EKNPLPSKETIEQEKqA ges TYB4_MOUSE : 31- 47: ktetq EKNPLPSKETIEQEKqA ges TYB4_RABIT : 24- 40: ktetq EKNPLPSKETIEQEKqA ges TYB4_XENLA : 24- 40: ktetq EKNPLPSKETIEQEKqT ses TYB9_BOVIN : 24- 40: ktetq EKNTLPTKETIEQEKqA k TYB9_PIG : 24- 40: ktetq EKNTLPTKETIEQEKqA k TYBA_ONCMY : 24- 40: ktetq EKNPLPTKETIEQEKqA s TYBB_LATJA : 24- 40: ktetq EKNPLPSKETIEQEKaA ats TYBB_ONCMY : 24- 40: ktetq EKNPLPTKETIEQEKqA ta R 18: 58.9942 10( 10) K-N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 25- 40: tetqe KNTLPTKETIEQEKrS eis TYB4_HUMAN : 25- 40: tetqe KNPLPSKETIEQEKqA ges TYB4_MOUSE : 32- 47: tetqe KNPLPSKETIEQEKqA ges TYB4_RABIT : 25- 40: tetqe KNPLPSKETIEQEKqA ges TYB4_XENLA : 25- 40: tetqe KNPLPSKETIEQEKqT ses TYB9_BOVIN : 25- 40: tetqe KNTLPTKETIEQEKqA k TYB9_PIG : 25- 40: tetqe KNTLPTKETIEQEKqA k TYBA_ONCMY : 25- 40: tetqe KNPLPTKETIEQEKqA s TYBB_LATJA : 25- 40: tetqe KNPLPSKETIEQEKaA ats TYBB_ONCMY : 25- 40: tetqe KNPLPTKETIEQEKqA ta S 19: 54.8241 10( 10) N-[PT]-L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 26- 40: etqek NTLPTKETIEQEKrS eis TYB4_HUMAN : 26- 40: etqek NPLPSKETIEQEKqA ges TYB4_MOUSE : 33- 47: etqek NPLPSKETIEQEKqA ges TYB4_RABIT : 26- 40: etqek NPLPSKETIEQEKqA ges TYB4_XENLA : 26- 40: etqek NPLPSKETIEQEKqT ses TYB9_BOVIN : 26- 40: etqek NTLPTKETIEQEKqA k TYB9_PIG : 26- 40: etqek NTLPTKETIEQEKqA k TYBA_ONCMY : 26- 40: etqek NPLPTKETIEQEKqA s TYBB_LATJA : 26- 40: etqek NPLPSKETIEQEKaA ats TYBB_ONCMY : 26- 40: etqek NPLPTKETIEQEKqA ta T 20: 47.4803 10( 10) L-P-[ST]-K-E-T-I-E-Q-E-K-x-[AST] Occurences: 10(10) TYB0_HUMAN : 28- 40: qeknt LPTKETIEQEKrS eis TYB4_HUMAN : 28- 40: qeknp LPSKETIEQEKqA ges TYB4_MOUSE : 35- 47: qeknp LPSKETIEQEKqA ges TYB4_RABIT : 28- 40: qeknp LPSKETIEQEKqA ges TYB4_XENLA : 28- 40: qeknp LPSKETIEQEKqT ses TYB9_BOVIN : 28- 40: qeknt LPTKETIEQEKqA k TYB9_PIG : 28- 40: qeknt LPTKETIEQEKqA k TYBA_ONCMY : 28- 40: qeknp LPTKETIEQEKqA s TYBB_LATJA : 28- 40: qeknp LPSKETIEQEKaA ats TYBB_ONCMY : 28- 40: qeknp LPTKETIEQEKqA ta Number of patterns evaluated by Pratt:878 Total running time: 0 seconds