------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file THF_DHG_CYH_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename THF_DHG_CYH_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: C1TC_HUMAN 934 C1TC_RAT 934 C1TC_YEAST 946 C1TM_YEAST 975 FOLD_ECOLI 287 FOLD_HAEIN 281 MTDC_DROME 357 MTDC_HUMAN 344 MTDC_MOUSE 350 Pratt run started at Thu Feb 6 21:25:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 62.5508 9( 9) I-T-P-V-P-G-G-V-G-P-M-T-V-A-x-L 2: 58.3807 9( 9) T-P-V-P-G-G-V-G-P-M-T-V-A-x-L 3: 54.2107 9( 9) P-V-P-G-G-V-G-P-M-T-V-A-x-L 4: 50.0406 9( 9) V-P-G-G-V-G-P-M-T-V-A-x-L 5: 45.8706 9( 9) P-G-G-V-G-P-M-T-V-A-x-L 6: 41.7005 9( 9) G-G-V-G-P-M-T-V-A-x-L 7: 37.5305 9( 9) G-V-G-P-M-T-V-A-x-L 8: 33.3604 9( 9) V-G-P-M-T-V-A-x-L 9: 32.3604 9( 9) G-x(3)-V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-x(2)-P-x(4)-L 10: 32.3604 9( 9) K-D-V-D-G-x(4)-N-x-G-x(1,3)-L 11: 32.3604 9( 9) P-x-L-x(4)-V-G-x(4)-S-x(2)-Y-x(0,2)-V-x(2)-K 12: 31.8604 11( 9) K-x(0,1)-D-V-D-G-x(4)-N-x-G-x(1,3)-L 13: 29.1904 9( 9) G-P-M-T-V-A-x-L 14: 28.1904 14( 9) V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-x(2)-P-x(4)-L 15: 28.1904 9( 9) D-V-D-G-x(4)-N-x-G-x(1,3)-L 16: 28.1904 9( 9) L-x(4)-V-G-x(4)-S-x(2)-Y-x(0,2)-V-x(2)-K 17: 25.0203 9( 9) P-M-T-V-A-x-L 18: 24.5203 9( 9) K-x(3,4)-V-I-D-x-G-x-N 19: 24.5203 12( 9) V-x(0,1)-G-x-S-x(2)-V-x(2)-P-x(4)-L 20: 24.0203 9( 9) K-x(3,4)-V-x(0,1)-I-D-x-G-x-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 79.8336 9( 9) I-T-P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] B 2: 75.6636 9( 9) T-P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] C 3: 71.4935 9( 9) P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] D 4: 67.3235 9( 9) V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] E 5: 63.1534 9( 9) P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] F 6: 58.9834 9( 9) G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] G 7: 54.8133 9( 9) G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] H 8: 50.8296 9( 9) P-x-L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V-x(2)-K-x(2)-[AEQS] I 9: 50.6433 9( 9) V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] J 10: 46.6596 9( 9) L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V-x(2)-K-x(2)-[AEQS] K 11: 46.4732 9( 9) G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] L 12: 44.4213 9( 9) P-x-L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V M 13: 44.2073 9( 9) G-x(2)-[ASV]-V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] N 14: 42.3032 9( 9) P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] O 15: 40.5700 9( 9) K-D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] P 16: 40.2513 9( 9) L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V Q 17: 40.0700 11( 9) K-x(0,1)-D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] R 18: 37.4401 14( 9) V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] S 19: 36.4000 9( 9) D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] T 20: 33.7701 12( 9) V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 79.8336 9( 9) I-T-P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 267- 292: erasf ITPVPGGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 267- 292: ekasf ITPVPGGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 273- 298: kyvhl ITPVPGGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 297- 322: ektsy ITPVPGGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 255- 280: krasy ITPVPGGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 254- 279: ekaay ITPVPGGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 324- 349: qvagh ITPVPGGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 299- 324: qkagy ITPVPGGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 305- 330: kkagy ITPVPGGVGPMTVAmLMkNTIiAakK vlrpe B 2: 75.6636 9( 9) T-P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 268- 292: rasfi TPVPGGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 268- 292: kasfi TPVPGGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 274- 298: yvhli TPVPGGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 298- 322: ktsyi TPVPGGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 256- 280: rasyi TPVPGGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 255- 279: kaayi TPVPGGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 325- 349: vaghi TPVPGGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 300- 324: kagyi TPVPGGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 306- 330: kagyi TPVPGGVGPMTVAmLMkNTIiAakK vlrpe C 3: 71.4935 9( 9) P-V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 269- 292: asfit PVPGGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 269- 292: asfit PVPGGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 275- 298: vhlit PVPGGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 299- 322: tsyit PVPGGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 257- 280: asyit PVPGGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 256- 279: aayit PVPGGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 326- 349: aghit PVPGGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 301- 324: agyit PVPGGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 307- 330: agyit PVPGGVGPMTVAmLMkNTIiAakK vlrpe D 4: 67.3235 9( 9) V-P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 270- 292: sfitp VPGGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 270- 292: sfitp VPGGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 276- 298: hlitp VPGGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 300- 322: syitp VPGGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 258- 280: syitp VPGGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 257- 279: ayitp VPGGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 327- 349: ghitp VPGGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 302- 324: gyitp VPGGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 308- 330: gyitp VPGGVGPMTVAmLMkNTIiAakK vlrpe E 5: 63.1534 9( 9) P-G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 271- 292: fitpv PGGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 271- 292: fitpv PGGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 277- 298: litpv PGGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 301- 322: yitpv PGGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 259- 280: yitpv PGGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 258- 279: yitpv PGGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 328- 349: hitpv PGGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 303- 324: yitpv PGGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 309- 330: yitpv PGGVGPMTVAmLMkNTIiAakK vlrpe F 6: 58.9834 9( 9) G-G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 272- 292: itpvp GGVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 272- 292: itpvp GGVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 278- 298: itpvp GGVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 302- 322: itpvp GGVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 260- 280: itpvp GGVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 259- 279: itpvp GGVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 329- 349: itpvp GGVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 304- 324: itpvp GGVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 310- 330: itpvp GGVGPMTVAmLMkNTIiAakK vlrpe G 7: 54.8133 9( 9) G-V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 273- 292: tpvpg GVGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 273- 292: tpvpg GVGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 279- 298: tpvpg GVGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 303- 322: tpvpg GVGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 261- 280: tpvpg GVGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 260- 279: tpvpg GVGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 330- 349: tpvpg GVGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 305- 324: tpvpg GVGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 311- 330: tpvpg GVGPMTVAmLMkNTIiAakK vlrpe H 8: 50.8296 9( 9) P-x-L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V-x(2)-K-x(2)-[AEQS] Occurences: 9(9) C1TC_HUMAN : 35- 60: vpgft PrLaILqVGNRDDSnlYinVklKaaE eigik C1TC_RAT : 35- 60: vpgft PgLaILqVGDRDDSnlYinVklKaaQ eigik C1TC_YEAST : 35- 58: vpgfa PnLaIIqVGNRPDSatY--VrmKrkA aeeag C1TM_YEAST : 67- 90: hpnfk PtLkIIqVGARPDSstY--VrmKlkA skdsn FOLD_ECOLI : 33- 56: aglra PgLaVVlVGSNPASqiY--VasKrkA ceevg FOLD_HAEIN : 33- 56: qgkra PgLaVIlVGADPASqiY--VgnKrkS ceevg MTDC_DROME : 87- 110: agypk PhLtAViVGEDPASekY--VanKmvA crevg MTDC_HUMAN : 62- 85: sgnkr PhLsVIlVGENPAShsY--VlnKtrA aavvg MTDC_MOUSE : 68- 91: sgnkr PhLsVIlVGDNPAShsY--VlnKtrA aaevg I 9: 50.6433 9( 9) V-G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 274- 292: pvpgg VGPMTVAmLMqSTVeSakR flekf C1TC_RAT : 274- 292: pvpgg VGPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 280- 298: pvpgg VGPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 304- 322: pvpgg VGPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 262- 280: pvpgg VGPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 261- 279: pvpgg VGPMTVAmLMsNTLyAyeH nk MTDC_DROME : 331- 349: pvpgg VGPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 306- 324: pvpgg VGPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 312- 330: pvpgg VGPMTVAmLMkNTIiAakK vlrpe J 10: 46.6596 9( 9) L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V-x(2)-K-x(2)-[AEQS] Occurences: 9(9) C1TC_HUMAN : 37- 60: gftpr LaILqVGNRDDSnlYinVklKaaE eigik C1TC_RAT : 37- 60: gftpg LaILqVGDRDDSnlYinVklKaaQ eigik C1TC_YEAST : 37- 58: gfapn LaIIqVGNRPDSatY--VrmKrkA aeeag C1TM_YEAST : 69- 90: nfkpt LkIIqVGARPDSstY--VrmKlkA skdsn FOLD_ECOLI : 35- 56: lrapg LaVVlVGSNPASqiY--VasKrkA ceevg FOLD_HAEIN : 35- 56: krapg LaVIlVGADPASqiY--VgnKrkS ceevg MTDC_DROME : 89- 110: ypkph LtAViVGEDPASekY--VanKmvA crevg MTDC_HUMAN : 64- 85: nkrph LsVIlVGENPAShsY--VlnKtrA aavvg MTDC_MOUSE : 70- 91: nkrph LsVIlVGDNPAShsY--VlnKtrA aaevg K 11: 46.4732 9( 9) G-P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 275- 292: vpggv GPMTVAmLMqSTVeSakR flekf C1TC_RAT : 275- 292: vpggv GPMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 281- 298: vpggv GPMTVAmLMqNTLiAakR qmees C1TM_YEAST : 305- 322: vpggv GPMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 263- 280: vpggv GPMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 262- 279: vpggv GPMTVAmLMsNTLyAyeH nk MTDC_DROME : 332- 349: vpggv GPMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 307- 324: vpggv GPMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 313- 330: vpggv GPMTVAmLMkNTIiAakK vlrpe L 12: 44.4213 9( 9) P-x-L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V Occurences: 9(9) C1TC_HUMAN : 35- 54: vpgft PrLaILqVGNRDDSnlYinV klkaa C1TC_RAT : 35- 54: vpgft PgLaILqVGDRDDSnlYinV klkaa C1TC_YEAST : 35- 52: vpgfa PnLaIIqVGNRPDSatY--V rmkrk C1TM_YEAST : 67- 84: hpnfk PtLkIIqVGARPDSstY--V rmklk FOLD_ECOLI : 33- 50: aglra PgLaVVlVGSNPASqiY--V askrk FOLD_HAEIN : 33- 50: qgkra PgLaVIlVGADPASqiY--V gnkrk MTDC_DROME : 87- 104: agypk PhLtAViVGEDPASekY--V ankmv MTDC_HUMAN : 62- 79: sgnkr PhLsVIlVGENPAShsY--V lnktr MTDC_MOUSE : 68- 85: sgnkr PhLsVIlVGDNPAShsY--V lnktr M 13: 44.2073 9( 9) G-x(2)-[ASV]-V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] Occurences: 9(9) C1TC_HUMAN : 164- 188: gvpia GrhAVvV-GrSkiVGaPMhdlLlwnN atvtt C1TC_HUMAN : 164- 188: gvpia GrhAV-VvGrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 164- 188: gvqia GrhAVvV-GrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 164- 188: gvqia GrhAV-VvGrSkiVGaPMhdlLlwnN atvtt C1TC_YEAST : 162- 186: nvtie GsrSV-ViGrSdiVGsPVaelLkslN stvti C1TM_YEAST : 194- 218: hvkld GknAV-VlGrSsiVGnPIaslLknaN atvtv FOLD_ECOLI : 158- 182: nidtf GlnAV-ViGaSniVGrPMsmeLllaG ctttv FOLD_HAEIN : 158- 182: gidlh GkhAViV-GaSniVGrPMsleLllaG atvtv MTDC_DROME : 212- 236: kietl GrnAVvV-GrSknVSlPMailLhadG kyatk MTDC_DROME : 212- 236: kietl GrnAV-VvGrSknVSlPMailLhadG kyatk MTDC_HUMAN : 187- 211: giptl GknVV-VaGrSknVGmPIamlLhtdG aherp MTDC_MOUSE : 193- 217: giptl GknVV-VaGrSknVGmPIamlLhtdG aherp N 14: 42.3032 9( 9) P-M-T-V-A-x-L-[IMV]-x-[NS]-[TV]-[ILV]-x-[AS]-x(2)-[EHKR] Occurences: 9(9) C1TC_HUMAN : 276- 292: pggvg PMTVAmLMqSTVeSakR flekf C1TC_RAT : 276- 292: pggvg PMTVAmLMqSTVeSaqR flkkf C1TC_YEAST : 282- 298: pggvg PMTVAmLMqNTLiAakR qmees C1TM_YEAST : 306- 322: pggvg PMTVAmLVsNVLlAakR qfves FOLD_ECOLI : 264- 280: pggvg PMTVAtLIeNTLqAcvE yhdpq FOLD_HAEIN : 263- 279: pggvg PMTVAmLMsNTLyAyeH nk MTDC_DROME : 333- 349: pggvg PMTVAmLMhNTLkAarK qfddr MTDC_HUMAN : 308- 324: pggvg PMTVAmLMkNTIiAakK vlrle MTDC_MOUSE : 314- 330: pggvg PMTVAmLMkNTIiAakK vlrpe O 15: 40.5700 9( 9) K-D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] Occurences: 9(9) C1TC_HUMAN : 121- 135: aiape KDVDGLtsiNAGr--LA rgdln C1TC_RAT : 121- 135: aiape KDVDGLtsiNAGk--LA rgdlk C1TC_YEAST : 119- 133: rvlae KDVDGFgptNIGe--LN kkngh C1TM_YEAST : 151- 165: avdfk KDVDGFhryNAGe--LA kkggk FOLD_ECOLI : 117- 131: rihpd KDVDGFhpyNVGr--LC qrapr FOLD_HAEIN : 117- 131: ridpk KDVDGFhpyNVGr--LC qript MTDC_DROME : 171- 187: avdvd KDVDGFnevNIGrtaLD meani MTDC_HUMAN : 146- 162: avspd KDVDGFhviNVGrmcLD qysml MTDC_MOUSE : 152- 168: avspd KDVDGFhviNVGrmcLD qysml P 16: 40.2513 9( 9) L-x-[AIV]-[ILV]-x-V-G-[ADENS]-[DNR]-[DP]-[AD]-S-x(2)-Y-x(0,2)-V Occurences: 9(9) C1TC_HUMAN : 37- 54: gftpr LaILqVGNRDDSnlYinV klkaa C1TC_RAT : 37- 54: gftpg LaILqVGDRDDSnlYinV klkaa C1TC_YEAST : 37- 52: gfapn LaIIqVGNRPDSatY--V rmkrk C1TM_YEAST : 69- 84: nfkpt LkIIqVGARPDSstY--V rmklk FOLD_ECOLI : 35- 50: lrapg LaVVlVGSNPASqiY--V askrk FOLD_HAEIN : 35- 50: krapg LaVIlVGADPASqiY--V gnkrk MTDC_DROME : 89- 104: ypkph LtAViVGEDPASekY--V ankmv MTDC_HUMAN : 64- 79: nkrph LsVIlVGENPAShsY--V lnktr MTDC_MOUSE : 70- 85: nkrph LsVIlVGDNPAShsY--V lnktr Q 17: 40.0700 11( 9) K-x(0,1)-D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] Occurences: 11(9) C1TC_HUMAN : 121- 135: aiape K-DVDGLtsiNAGr--LA rgdln C1TC_RAT : 121- 135: aiape K-DVDGLtsiNAGk--LA rgdlk C1TC_YEAST : 119- 133: rvlae K-DVDGFgptNIGe--LN kkngh C1TM_YEAST : 150- 165: navdf KkDVDGFhryNAGe--LA kkggk C1TM_YEAST : 151- 165: avdfk K-DVDGFhryNAGe--LA kkggk FOLD_ECOLI : 117- 131: rihpd K-DVDGFhpyNVGr--LC qrapr FOLD_HAEIN : 116- 131: eridp KkDVDGFhpyNVGr--LC qript FOLD_HAEIN : 117- 131: ridpk K-DVDGFhpyNVGr--LC qript MTDC_DROME : 171- 187: avdvd K-DVDGFnevNIGrtaLD meani MTDC_HUMAN : 146- 162: avspd K-DVDGFhviNVGrmcLD qysml MTDC_MOUSE : 152- 168: avspd K-DVDGFhviNVGrmcLD qysml R 18: 37.4401 14( 9) V-x(0,1)-V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] Occurences: 14(9) C1TC_HUMAN : 168- 188: agrha VvV-GrSkiVGaPMhdlLlwnN atvtt C1TC_HUMAN : 168- 188: agrha V-VvGrSkiVGaPMhdlLlwnN atvtt C1TC_HUMAN : 169- 188: grhav V-V-GrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 168- 188: agrha VvV-GrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 168- 188: agrha V-VvGrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 169- 188: grhav V-V-GrSkiVGaPMhdlLlwnN atvtt C1TC_YEAST : 166- 186: egsrs V-ViGrSdiVGsPVaelLkslN stvti C1TM_YEAST : 198- 218: dgkna V-VlGrSsiVGnPIaslLknaN atvtv FOLD_ECOLI : 162- 182: fglna V-ViGaSniVGrPMsmeLllaG ctttv FOLD_HAEIN : 162- 182: hgkha ViV-GaSniVGrPMsleLllaG atvtv MTDC_DROME : 216- 236: lgrna VvV-GrSknVSlPMailLhadG kyatk MTDC_DROME : 216- 236: lgrna V-VvGrSknVSlPMailLhadG kyatk MTDC_DROME : 217- 236: grnav V-V-GrSknVSlPMailLhadG kyatk MTDC_HUMAN : 190- 211: tlgkn VvVaGrSknVGmPIamlLhtdG aherp MTDC_HUMAN : 191- 211: lgknv V-VaGrSknVGmPIamlLhtdG aherp MTDC_MOUSE : 196- 217: tlgkn VvVaGrSknVGmPIamlLhtdG aherp MTDC_MOUSE : 197- 217: lgknv V-VaGrSknVGmPIamlLhtdG aherp S 19: 36.4000 9( 9) D-V-D-G-[FL]-x(3)-N-[AIV]-G-x(1,3)-L-[ACDN] Occurences: 9(9) C1TC_HUMAN : 122- 135: iapek DVDGLtsiNAGr--LA rgdln C1TC_RAT : 122- 135: iapek DVDGLtsiNAGk--LA rgdlk C1TC_YEAST : 120- 133: vlaek DVDGFgptNIGe--LN kkngh C1TM_YEAST : 152- 165: vdfkk DVDGFhryNAGe--LA kkggk FOLD_ECOLI : 118- 131: ihpdk DVDGFhpyNVGr--LC qrapr FOLD_HAEIN : 118- 131: idpkk DVDGFhpyNVGr--LC qript MTDC_DROME : 172- 187: vdvdk DVDGFnevNIGrtaLD meani MTDC_HUMAN : 147- 162: vspdk DVDGFhviNVGrmcLD qysml MTDC_MOUSE : 153- 168: vspdk DVDGFhviNVGrmcLD qysml T 20: 33.7701 12( 9) V-x(0,1)-G-x-S-x(2)-V-[GS]-x-P-[IMV]-x(3)-L-x(3)-[GN] Occurences: 12(9) C1TC_HUMAN : 169- 188: grhav VvGrSkiVGaPMhdlLlwnN atvtt C1TC_HUMAN : 170- 188: rhavv V-GrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 169- 188: grhav VvGrSkiVGaPMhdlLlwnN atvtt C1TC_RAT : 170- 188: rhavv V-GrSkiVGaPMhdlLlwnN atvtt C1TC_YEAST : 167- 186: gsrsv ViGrSdiVGsPVaelLkslN stvti C1TM_YEAST : 199- 218: gknav VlGrSsiVGnPIaslLknaN atvtv FOLD_ECOLI : 163- 182: glnav ViGaSniVGrPMsmeLllaG ctttv FOLD_HAEIN : 164- 182: khavi V-GaSniVGrPMsleLllaG atvtv MTDC_DROME : 217- 236: grnav VvGrSknVSlPMailLhadG kyatk MTDC_DROME : 218- 236: rnavv V-GrSknVSlPMailLhadG kyatk MTDC_HUMAN : 192- 211: gknvv VaGrSknVGmPIamlLhtdG aherp MTDC_MOUSE : 198- 217: gknvv VaGrSknVGmPIamlLhtdG aherp Number of patterns evaluated by Pratt:21606 Total running time: 15 seconds