------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file THAUMATIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename THAUMATIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IAAT_MAIZE 206 NP24_LYCES 239 OLPA_TOBAC 251 OSMO_TOBAC 243 P21_SOYBN 202 PR1A_HORVU 173 PR1C_HORVU 173 PR5_ARATH 239 PRR1_TOBAC 226 PRR2_TOBAC 226 THHR_HORVU 44 THHS_HORVU 37 THM1_THADA 207 THM2_THADA 235 TLP_ORYSA 177 TLP_WHEAT 173 TPM1_LYCES 238 ZEAM_MAIZE 27 Pratt run started at Thu Feb 6 21:25:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 18( 18) N-x-C-x(2)-T-x-W-x(0,2)-A 2: 15.6802 19( 18) P-x(0,1)-G-G-x(0,1)-G 3: 15.6802 18( 18) C-x(2)-T-x-W-x(0,2)-A 4: 15.1802 26( 18) G-x(0,2)-G-G-x(1,2)-L 5: 14.6802 23( 18) A-x(0,2)-P-x-G-x(0,2)-G 6: 12.5102 18( 18) G-G-x(2)-L 7: 12.5102 21( 18) G-G-G 8: 12.5102 22( 18) P-x-G-G 9: 11.5102 34( 18) A-x(5)-G-x(0,2)-G 10: 11.5102 18( 18) W-x(0,1)-A-x(4,5)-G 11: 11.5102 23( 18) V-x(1,3)-A-x(4)-G 12: 11.5102 18( 18) T-x-W-x(0,2)-A 13: 11.5102 21( 18) T-x(3,4)-A-x(3,4)-G 14: 11.5102 22( 18) T-x(2,4)-A-x(4)-G 15: 11.0102 32( 18) A-x(2,4)-P-x(1,2)-G 16: 11.0102 31( 18) T-x(2,4)-N-x(1,2)-C 17: 8.3401 35( 18) G-x(2)-L 18: 8.3401 34( 18) V-x(2)-G 19: 8.3401 44( 18) A-A 20: 7.8401 53( 18) G-x(0,1)-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 26.7687 23( 18) T-x(2,4)-N-x(1,2)-C-x(2)-[ENQST]-[ILV]-x-[APTV]-x-[AGST]-x(3)-[DGNQ]-[AGP]-[ACGPV] B 2: 24.9943 18( 18) N-x-C-x(2)-T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] C 3: 20.8242 18( 18) C-x(2)-T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] D 4: 16.9243 18( 18) W-x(0,1)-A-x(4,5)-G-[DGQT]-[AG] E 5: 16.9225 23( 18) A-x(0,2)-P-[AGIV]-G-x(0,2)-G F 6: 16.6542 18( 18) T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] G 7: 15.6802 19( 18) P-x(0,1)-G-G-x(0,1)-G H 8: 15.3451 30( 18) A-x(3)-[AILPV]-[AGIPV]-G-x(0,2)-G I 9: 15.1802 26( 18) G-x(0,2)-G-G-x(1,2)-L J 10: 14.3934 19( 18) P-[ADGSV]-G-G K 11: 14.1473 18( 18) G-G-x(2)-L-[DEGNST] L 12: 14.1091 21( 18) T-x(3,4)-A-x(3,4)-G-x-[AGV] M 13: 13.7103 19( 18) V-x(1,3)-A-x-[APTV]-x(2)-G N 14: 13.2701 32( 18) A-x(2,4)-P-x(1,2)-G-[CDGT] O 15: 12.5102 21( 18) G-G-G P 16: 11.5102 22( 18) T-x(2,4)-A-x(4)-G Q 17: 10.5705 30( 18) V-x-[ADGP]-G R 18: 9.7665 40( 18) A-A-[ACDGSTV] S 19: 9.5786 34( 18) G-x(2)-L-[ADEGNQST] T 20: 8.3401 35( 18) G-x(2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 26.7687 23( 18) T-x(2,4)-N-x(1,2)-C-x(2)-[ENQST]-[ILV]-x-[APTV]-x-[AGST]-x(3)-[DGNQ]-[AGP]-[ACGPV] Occurences: 23(18) IAAT_MAIZE : 4- 23: avf Tvv--Nq-CpfTVwAaSvpvGGG rqlnr NP24_LYCES : 15- 36: ytyaa TievrNn-CpyTVwAaStpiGGG rrlnr OLPA_TOBAC : 148- 169: hgiqc Tani-NgeCpgSLrVpGgcnNPC ttfgg OSMO_TOBAC : 23- 44: ytyaa TievrNn-CpyTVwAaStpiGGG rrldr OSMO_TOBAC : 145- 165: chalc Tai--NgeCpaELrVpGgcnNPC ttfgg P21_SOYBN : 124- 145: rgisc Tadi-NgqCpsELkTqGgcnNPC tvfkt PR1A_HORVU : 22- 43: gasaa TfnikNn-CgsTIwPaGipvGGG felgs PR1C_HORVU : 22- 43: gasaa TfnikNn-CgsTIwPaGipvGGG felgs PR5_ARATH : 27- 46: matdf Tlr--Nn-CptTVwAgTlagQGP klgdg PRR1_TOBAC : 146- 167: rnlrc Tapi-NeqCpaQLkTqGgcnNPC tvikt PRR2_TOBAC : 146- 167: rnlrc Tapi-NeqCpaQLkTqGgcnNPC tvikt THHR_HORVU : 2- 23: a TitvvNr-CsyTVwPgAlpgGGV rldpg THHR_HORVU : 4- 23: ati Tvv--Nr-CsyTVwPgAlpgGGV rldpg THHS_HORVU : 2- 23: a TftviNk-CqyTVwAaAvpaGGG qklda THHS_HORVU : 4- 23: atf Tvi--Nk-CqyTVwAaAvpaGGG qklda THM1_THADA : 2- 23: a TfeivNr-CsyTVwAaAskgDAA ldagg THM2_THADA : 24- 45: lsraa TfeivNr-CsyTVwAaAskgDAA ldagg TLP_ORYSA : 28- 49: ganaa TftitNr-CsfTVwPaAtpvGGG vqlsp TLP_ORYSA : 30- 49: naatf Tit--Nr-CsfTVwPaAtpvGGG vqlsp TLP_WHEAT : 22- 43: gasaa TfnikNn-CgfTIwPaGipvGGG falgs TPM1_LYCES : 15- 36: ytyaa TfevrNn-CpyTVwAaStpiGGG rrldr TPM1_LYCES : 139- 160: haihc Tani-NgeCpgSLrVpGgcnNPC ttfgg ZEAM_MAIZE : 4- 23: avf Tvv--Nq-CpfTVwAaSvpvGGG rqln B 2: 24.9943 18( 18) N-x-C-x(2)-T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] Occurences: 18(18) IAAT_MAIZE : 7- 19: vftvv NqCpfTVW--AasvP vgggr IAAT_MAIZE : 7- 20: vftvv NqCpfTVWa-AsvpV gggrq NP24_LYCES : 20- 32: tievr NnCpyTVW--AastP igggr NP24_LYCES : 20- 33: tievr NnCpyTVWa-AstpI gggrr OLPA_TOBAC : 29- 41: vfevh NnCpyTVW--AaatP vgggr OLPA_TOBAC : 29- 42: vfevh NnCpyTVWa-AatpV gggrr OLPA_TOBAC : 29- 43: vfevh NnCpyTVWaaAtpvG ggrrl OSMO_TOBAC : 28- 40: tievr NnCpyTVW--AastP igggr OSMO_TOBAC : 28- 41: tievr NnCpyTVWa-AstpI gggrr P21_SOYBN : 7- 19: rfeit NrCtyTVW--AasvP vgggv P21_SOYBN : 7- 20: rfeit NrCtyTVWa-AsvpV gggvq PR1A_HORVU : 27- 40: tfnik NnCgsTIWp-AgipV gggfe PR1C_HORVU : 27- 40: tfnik NnCgsTIWp-AgipV gggfe PR5_ARATH : 30- 42: dftlr NnCptTVW--AgtlA gqgpk PRR1_TOBAC : 32- 44: tfdiv NkCtyTVW--AaasP gggrr PRR1_TOBAC : 32- 45: tfdiv NkCtyTVWa-AaspG ggrrl PRR1_TOBAC : 32- 46: tfdiv NkCtyTVWaaAspgG grrld PRR2_TOBAC : 32- 44: tfdiv NqCtyTVW--AaasP gggrq PRR2_TOBAC : 32- 45: tfdiv NqCtyTVWa-AaspG ggrql PRR2_TOBAC : 32- 46: tfdiv NqCtyTVWaaAspgG grqln THHR_HORVU : 7- 21: titvv NrCsyTVWpgAlpgG gvrld THHS_HORVU : 7- 19: tftvi NkCqyTVW--AaavP agggq THHS_HORVU : 7- 20: tftvi NkCqyTVWa-AavpA gggqk THHS_HORVU : 7- 21: tftvi NkCqyTVWaaAvpaG ggqkl THM1_THADA : 7- 20: tfeiv NrCsyTVWa-AaskG daald THM2_THADA : 29- 42: tfeiv NrCsyTVWa-AaskG daald TLP_ORYSA : 33- 46: tftit NrCsfTVWp-AatpV gggvq TLP_ORYSA : 33- 47: tftit NrCsfTVWpaAtpvG ggvql TLP_WHEAT : 27- 40: tfnik NnCgfTIWp-AgipV gggfa TPM1_LYCES : 20- 32: tfevr NnCpyTVW--AastP igggr TPM1_LYCES : 20- 33: tfevr NnCpyTVWa-AstpI gggrr ZEAM_MAIZE : 7- 19: vftvv NqCpfTVW--AasvP vgggr ZEAM_MAIZE : 7- 20: vftvv NqCpfTVWa-AsvpV gggrq C 3: 20.8242 18( 18) C-x(2)-T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] Occurences: 18(18) IAAT_MAIZE : 9- 19: tvvnq CpfTVW--AasvP vgggr IAAT_MAIZE : 9- 20: tvvnq CpfTVWa-AsvpV gggrq NP24_LYCES : 22- 32: evrnn CpyTVW--AastP igggr NP24_LYCES : 22- 33: evrnn CpyTVWa-AstpI gggrr OLPA_TOBAC : 31- 41: evhnn CpyTVW--AaatP vgggr OLPA_TOBAC : 31- 42: evhnn CpyTVWa-AatpV gggrr OLPA_TOBAC : 31- 43: evhnn CpyTVWaaAtpvG ggrrl OSMO_TOBAC : 30- 40: evrnn CpyTVW--AastP igggr OSMO_TOBAC : 30- 41: evrnn CpyTVWa-AstpI gggrr P21_SOYBN : 9- 19: eitnr CtyTVW--AasvP vgggv P21_SOYBN : 9- 20: eitnr CtyTVWa-AsvpV gggvq PR1A_HORVU : 29- 40: niknn CgsTIWp-AgipV gggfe PR1C_HORVU : 29- 40: niknn CgsTIWp-AgipV gggfe PR5_ARATH : 32- 42: tlrnn CptTVW--AgtlA gqgpk PRR1_TOBAC : 34- 44: divnk CtyTVW--AaasP gggrr PRR1_TOBAC : 34- 45: divnk CtyTVWa-AaspG ggrrl PRR1_TOBAC : 34- 46: divnk CtyTVWaaAspgG grrld PRR2_TOBAC : 34- 44: divnq CtyTVW--AaasP gggrq PRR2_TOBAC : 34- 45: divnq CtyTVWa-AaspG ggrql PRR2_TOBAC : 34- 46: divnq CtyTVWaaAspgG grqln THHR_HORVU : 9- 21: tvvnr CsyTVWpgAlpgG gvrld THHS_HORVU : 9- 19: tvink CqyTVW--AaavP agggq THHS_HORVU : 9- 20: tvink CqyTVWa-AavpA gggqk THHS_HORVU : 9- 21: tvink CqyTVWaaAvpaG ggqkl THM1_THADA : 9- 20: eivnr CsyTVWa-AaskG daald THM2_THADA : 31- 42: eivnr CsyTVWa-AaskG daald TLP_ORYSA : 35- 46: titnr CsfTVWp-AatpV gggvq TLP_ORYSA : 35- 47: titnr CsfTVWpaAtpvG ggvql TLP_WHEAT : 29- 40: niknn CgfTIWp-AgipV gggfa TPM1_LYCES : 22- 32: evrnn CpyTVW--AastP igggr TPM1_LYCES : 22- 33: evrnn CpyTVWa-AstpI gggrr ZEAM_MAIZE : 9- 19: tvvnq CpfTVW--AasvP vgggr ZEAM_MAIZE : 9- 20: tvvnq CpfTVWa-AsvpV gggrq D 4: 16.9243 18( 18) W-x(0,1)-A-x(4,5)-G-[DGQT]-[AG] Occurences: 18(18) IAAT_MAIZE : 14- 23: cpftv WaAsvpv-GGG rqlnr IAAT_MAIZE : 14- 23: cpftv W-AasvpvGGG rqlnr NP24_LYCES : 27- 36: cpytv WaAstpi-GGG rrlnr NP24_LYCES : 27- 36: cpytv W-AastpiGGG rrlnr OLPA_TOBAC : 36- 45: cpytv WaAatpv-GGG rrler OLPA_TOBAC : 36- 45: cpytv W-AaatpvGGG rrler OSMO_TOBAC : 35- 44: cpytv WaAstpi-GGG rrldr OSMO_TOBAC : 35- 44: cpytv W-AastpiGGG rrldr P21_SOYBN : 14- 23: ctytv WaAsvpv-GGG vqlnp P21_SOYBN : 14- 23: ctytv W-AasvpvGGG vqlnp PR1A_HORVU : 34- 43: cgsti WpAgipv-GGG felgs PR1C_HORVU : 34- 43: cgsti WpAgipv-GGG felgs PR5_ARATH : 37- 45: cpttv W-Agtla-GQG pklgd PRR1_TOBAC : 39- 47: ctytv W-Aaasp-GGG rrlds PRR2_TOBAC : 39- 47: ctytv W-Aaasp-GGG rqlns THHR_HORVU : 31- 40: dpgqr W-AlnmpaGTA gaav THHS_HORVU : 14- 23: cqytv WaAavpa-GGG qklda THHS_HORVU : 14- 23: cqytv W-AaavpaGGG qklda THM1_THADA : 14- 22: csytv W-Aaask-GDA aldag THM2_THADA : 36- 44: csytv W-Aaask-GDA aldag TLP_ORYSA : 40- 49: csftv WpAatpv-GGG vqlsp TLP_WHEAT : 34- 43: cgfti WpAgipv-GGG falgs TPM1_LYCES : 27- 36: cpytv WaAstpi-GGG rrldr TPM1_LYCES : 27- 36: cpytv W-AastpiGGG rrldr ZEAM_MAIZE : 14- 23: cpftv WaAsvpv-GGG rqln ZEAM_MAIZE : 14- 23: cpftv W-AasvpvGGG rqln E 5: 16.9225 23( 18) A-x(0,2)-P-[AGIV]-G-x(0,2)-G Occurences: 23(18) IAAT_MAIZE : 16- 22: ftvwa AsvPVG--G grqln IAAT_MAIZE : 16- 23: ftvwa AsvPVGg-G rqlnr NP24_LYCES : 29- 35: ytvwa AstPIG--G grrln NP24_LYCES : 29- 36: ytvwa AstPIGg-G rrlnr OLPA_TOBAC : 38- 44: ytvwa AatPVG--G grrle OLPA_TOBAC : 38- 45: ytvwa AatPVGg-G rrler OLPA_TOBAC : 39- 44: tvwaa At-PVG--G grrle OLPA_TOBAC : 39- 45: tvwaa At-PVGg-G rrler OSMO_TOBAC : 37- 43: ytvwa AstPIG--G grrld OSMO_TOBAC : 37- 44: ytvwa AstPIGg-G rrldr P21_SOYBN : 16- 22: ytvwa AsvPVG--G gvqln P21_SOYBN : 16- 23: ytvwa AsvPVGg-G vqlnp PR1A_HORVU : 36- 42: stiwp AgiPVG--G gfelg PR1A_HORVU : 36- 43: stiwp AgiPVGg-G felgs PR1C_HORVU : 36- 42: stiwp AgiPVG--G gfelg PR1C_HORVU : 36- 43: stiwp AgiPVGg-G felgs PR5_ARATH : 65- 71: srqlt A--PAGwsG rfwar PRR1_TOBAC : 41- 47: ytvwa AasPGG--G rrlds PRR1_TOBAC : 42- 47: tvwaa As-PGG--G rrlds PRR2_TOBAC : 41- 47: ytvwa AasPGG--G rqlns PRR2_TOBAC : 42- 47: tvwaa As-PGG--G rqlns THHR_HORVU : 17- 22: tvwpg Al-PGG--G vrldp THHS_HORVU : 16- 22: ytvwa AavPAG--G gqkld THHS_HORVU : 16- 23: ytvwa AavPAGg-G qklda THHS_HORVU : 17- 22: tvwaa Av-PAG--G gqkld THHS_HORVU : 17- 23: tvwaa Av-PAGg-G qklda THM1_THADA : 140- 144: paklk A--PGG--G cndac THM2_THADA : 162- 166: paklk A--PGG--G cndac TLP_ORYSA : 42- 48: ftvwp AatPVG--G gvqls TLP_ORYSA : 42- 49: ftvwp AatPVGg-G vqlsp TLP_ORYSA : 43- 48: tvwpa At-PVG--G gvqls TLP_ORYSA : 43- 49: tvwpa At-PVGg-G vqlsp TLP_WHEAT : 36- 42: ftiwp AgiPVG--G gfalg TLP_WHEAT : 36- 43: ftiwp AgiPVGg-G falgs TPM1_LYCES : 29- 35: ytvwa AstPIG--G grrld TPM1_LYCES : 29- 36: ytvwa AstPIGg-G rrldr ZEAM_MAIZE : 16- 22: ftvwa AsvPVG--G grqln ZEAM_MAIZE : 16- 23: ftvwa AsvPVGg-G rqln F 6: 16.6542 18( 18) T-[IV]-W-x(0,2)-A-x(3)-[AGIPV] Occurences: 18(18) IAAT_MAIZE : 12- 19: nqcpf TVW--AasvP vgggr IAAT_MAIZE : 12- 20: nqcpf TVWa-AsvpV gggrq NP24_LYCES : 25- 32: nncpy TVW--AastP igggr NP24_LYCES : 25- 33: nncpy TVWa-AstpI gggrr OLPA_TOBAC : 34- 41: nncpy TVW--AaatP vgggr OLPA_TOBAC : 34- 42: nncpy TVWa-AatpV gggrr OLPA_TOBAC : 34- 43: nncpy TVWaaAtpvG ggrrl OSMO_TOBAC : 33- 40: nncpy TVW--AastP igggr OSMO_TOBAC : 33- 41: nncpy TVWa-AstpI gggrr P21_SOYBN : 12- 19: nrcty TVW--AasvP vgggv P21_SOYBN : 12- 20: nrcty TVWa-AsvpV gggvq PR1A_HORVU : 32- 40: nncgs TIWp-AgipV gggfe PR1C_HORVU : 32- 40: nncgs TIWp-AgipV gggfe PR5_ARATH : 35- 42: nncpt TVW--AgtlA gqgpk PRR1_TOBAC : 37- 44: nkcty TVW--AaasP gggrr PRR1_TOBAC : 37- 45: nkcty TVWa-AaspG ggrrl PRR1_TOBAC : 37- 46: nkcty TVWaaAspgG grrld PRR2_TOBAC : 37- 44: nqcty TVW--AaasP gggrq PRR2_TOBAC : 37- 45: nqcty TVWa-AaspG ggrql PRR2_TOBAC : 37- 46: nqcty TVWaaAspgG grqln THHR_HORVU : 12- 21: nrcsy TVWpgAlpgG gvrld THHS_HORVU : 12- 19: nkcqy TVW--AaavP agggq THHS_HORVU : 12- 20: nkcqy TVWa-AavpA gggqk THHS_HORVU : 12- 21: nkcqy TVWaaAvpaG ggqkl THM1_THADA : 12- 20: nrcsy TVWa-AaskG daald THM2_THADA : 34- 42: nrcsy TVWa-AaskG daald TLP_ORYSA : 38- 46: nrcsf TVWp-AatpV gggvq TLP_ORYSA : 38- 47: nrcsf TVWpaAtpvG ggvql TLP_WHEAT : 32- 40: nncgf TIWp-AgipV gggfa TPM1_LYCES : 25- 32: nncpy TVW--AastP igggr TPM1_LYCES : 25- 33: nncpy TVWa-AstpI gggrr ZEAM_MAIZE : 12- 19: nqcpf TVW--AasvP vgggr ZEAM_MAIZE : 12- 20: nqcpf TVWa-AsvpV gggrq G 7: 15.6802 19( 18) P-x(0,1)-G-G-x(0,1)-G Occurences: 19(18) IAAT_MAIZE : 19- 23: waasv PvGG-G rqlnr IAAT_MAIZE : 112- 117: pysfl PdGGsG csrgp NP24_LYCES : 32- 36: waast PiGG-G rrlnr OLPA_TOBAC : 41- 45: waaat PvGG-G rrler OSMO_TOBAC : 40- 44: waast PiGG-G rrldr P21_SOYBN : 19- 23: waasv PvGG-G vqlnp PR1A_HORVU : 39- 43: wpagi PvGG-G felgs PR1C_HORVU : 39- 43: wpagi PvGG-G felgs PR5_ARATH : 139- 144: klgir PsGGsG dckya PRR1_TOBAC : 44- 47: waaas P-GG-G rrlds PRR2_TOBAC : 44- 47: waaas P-GG-G rqlns THHR_HORVU : 19- 22: wpgal P-GG-G vrldp THHS_HORVU : 19- 23: waaav PaGG-G qklda THM1_THADA : 141- 144: aklka P-GG-G cndac THM2_THADA : 163- 166: aklka P-GG-G cndac TLP_ORYSA : 45- 49: wpaat PvGG-G vqlsp TLP_WHEAT : 39- 43: wpagi PvGG-G falgs TPM1_LYCES : 32- 36: waast PiGG-G rrldr ZEAM_MAIZE : 19- 23: waasv PvGG-G rqln H 8: 15.3451 30( 18) A-x(3)-[AILPV]-[AGIPV]-G-x(0,2)-G Occurences: 30(18) IAAT_MAIZE : 15- 22: pftvw AasvPVG--G grqln IAAT_MAIZE : 15- 23: pftvw AasvPVGg-G rqlnr IAAT_MAIZE : 16- 23: ftvwa AsvpVGG--G rqlnr NP24_LYCES : 28- 35: pytvw AastPIG--G grrln NP24_LYCES : 28- 36: pytvw AastPIGg-G rrlnr NP24_LYCES : 29- 36: ytvwa AstpIGG--G rrlnr OLPA_TOBAC : 37- 44: pytvw AaatPVG--G grrle OLPA_TOBAC : 37- 45: pytvw AaatPVGg-G rrler OLPA_TOBAC : 38- 45: ytvwa AatpVGG--G rrler OSMO_TOBAC : 36- 43: pytvw AastPIG--G grrld OSMO_TOBAC : 36- 44: pytvw AastPIGg-G rrldr OSMO_TOBAC : 37- 44: ytvwa AstpIGG--G rrldr OSMO_TOBAC : 153- 160: ngecp AelrVPG--G cnnpc P21_SOYBN : 15- 22: tytvw AasvPVG--G gvqln P21_SOYBN : 15- 23: tytvw AasvPVGg-G vqlnp P21_SOYBN : 16- 23: ytvwa AsvpVGG--G vqlnp PR1A_HORVU : 36- 43: stiwp AgipVGG--G felgs PR1A_HORVU : 102- 109: ppatl AeftIGG--G stqdf PR1C_HORVU : 36- 43: stiwp AgipVGG--G felgs PR1C_HORVU : 102- 109: ppatl AeftIGG--G stqdf PR5_ARATH : 110- 118: ppvtl AeftLVGd-G gkdfy PR5_ARATH : 110- 119: ppvtl AeftLVGdgG kdfyd PRR1_TOBAC : 40- 47: tytvw AaasPGG--G rrlds PRR2_TOBAC : 40- 47: tytvw AaasPGG--G rqlns THHR_HORVU : 32- 41: pgqrw AlnmPAGtaG aav THHS_HORVU : 15- 22: qytvw AaavPAG--G gqkld THHS_HORVU : 15- 23: qytvw AaavPAGg-G qklda THHS_HORVU : 16- 23: ytvwa AavpAGG--G qklda THM1_THADA : 136- 143: vgqcp AklkAPG--G gcnda THM1_THADA : 136- 144: vgqcp AklkAPGg-G cndac THM2_THADA : 158- 165: vgqcp AklkAPG--G gcnda THM2_THADA : 158- 166: vgqcp AklkAPGg-G cndac TLP_ORYSA : 42- 49: ftvwp AatpVGG--G vqlsp TLP_WHEAT : 36- 43: ftiwp AgipVGG--G falgs TLP_WHEAT : 102- 109: ppatl AeytIGG--G stqdf TPM1_LYCES : 28- 35: pytvw AastPIG--G grrld TPM1_LYCES : 28- 36: pytvw AastPIGg-G rrldr TPM1_LYCES : 29- 36: ytvwa AstpIGG--G rrldr ZEAM_MAIZE : 15- 22: pftvw AasvPVG--G grqln ZEAM_MAIZE : 15- 23: pftvw AasvPVGg-G rqln ZEAM_MAIZE : 16- 23: ftvwa AsvpVGG--G rqln I 9: 15.1802 26( 18) G-x(0,2)-G-G-x(1,2)-L Occurences: 26(18) IAAT_MAIZE : 21- 26: asvpv G--GGrqL nrges NP24_LYCES : 34- 39: astpi G--GGrrL nrgqt NP24_LYCES : 77- 83: gtcqt GdcGGv-L qctgw OLPA_TOBAC : 43- 48: aatpv G--GGrrL ergqs OLPA_TOBAC : 86- 92: gwcqt GdcGGv-L eckgw OSMO_TOBAC : 42- 47: astpi G--GGrrL drgqt OSMO_TOBAC : 85- 91: gtcqt GdcGGv-L qctgw P21_SOYBN : 21- 26: asvpv G--GGvqL npgqs P21_SOYBN : 64- 70: ggcqt GdcGGv-L dckay PR1A_HORVU : 41- 46: agipv G--GGfeL gsgqt PR1A_HORVU : 83- 89: gscqt GdcGGq-L scsls PR1C_HORVU : 41- 46: agipv G--GGfeL gsgqt PR1C_HORVU : 83- 89: gscqt GdcGGq-L scsls PR5_ARATH : 49- 55: qgpkl Gd-GGfeL tpgas PRR1_TOBAC : 45- 50: aaasp G--GGrrL dsgqs PRR2_TOBAC : 45- 50: aaasp G--GGrqL nsgqs THHR_HORVU : 20- 25: pgalp G--GGvrL dpgqr THHS_HORVU : 21- 26: aavpa G--GGqkL dagqt THM1_THADA : 69- 75: gickt GdcGGl-L rckrf THM2_THADA : 91- 97: gicrt GdcGGl-L qckrf TLP_ORYSA : 47- 52: aatpv G--GGvqL spgqt TLP_WHEAT : 41- 46: agipv G--GGfaL gsgqt TLP_WHEAT : 83- 89: gscqt GdcGGq-L scsls TPM1_LYCES : 34- 39: astpi G--GGrrL drgqt TPM1_LYCES : 77- 83: gscqt GdcGGv-L qctgw ZEAM_MAIZE : 21- 26: asvpv G--GGrqL n J 10: 14.3934 19( 18) P-[ADGSV]-G-G Occurences: 19(18) IAAT_MAIZE : 19- 22: waasv PVGG grqln IAAT_MAIZE : 112- 115: pysfl PDGG sgcsr NP24_LYCES : 128- 131: faptk PSGG kchai OLPA_TOBAC : 41- 44: waaat PVGG grrle OSMO_TOBAC : 135- 138: tfptn PSGG kchal P21_SOYBN : 19- 22: waasv PVGG gvqln PR1A_HORVU : 39- 42: wpagi PVGG gfelg PR1C_HORVU : 39- 42: wpagi PVGG gfelg PR5_ARATH : 139- 142: klgir PSGG sgdck PRR1_TOBAC : 44- 47: waaas PGGG rrlds PRR2_TOBAC : 44- 47: waaas PGGG rqlns THHR_HORVU : 19- 22: wpgal PGGG vrldp THHS_HORVU : 19- 22: waaav PAGG gqkld THM1_THADA : 141- 144: aklka PGGG cndac THM2_THADA : 163- 166: aklka PGGG cndac TLP_ORYSA : 45- 48: wpaat PVGG gvqls TLP_WHEAT : 39- 42: wpagi PVGG gfalg TPM1_LYCES : 128- 131: faptn PSGG kchai ZEAM_MAIZE : 19- 22: waasv PVGG grqln K 11: 14.1473 18( 18) G-G-x(2)-L-[DEGNST] Occurences: 18(18) IAAT_MAIZE : 22- 27: svpvg GGrqLN rgesw NP24_LYCES : 35- 40: stpig GGrrLN rgqtw OLPA_TOBAC : 44- 49: atpvg GGrrLE rgqsw OSMO_TOBAC : 43- 48: stpig GGrrLD rgqtw P21_SOYBN : 22- 27: svpvg GGvqLN pgqsw PR1A_HORVU : 42- 47: gipvg GGfeLG sgqts PR1C_HORVU : 42- 47: gipvg GGfeLG sgqts PR5_ARATH : 51- 56: pklgd GGfeLT pgasr PRR1_TOBAC : 46- 51: aaspg GGrrLD sgqsw PRR2_TOBAC : 46- 51: aaspg GGrqLN sgqsw THHR_HORVU : 21- 26: galpg GGvrLD pgqrw THHS_HORVU : 22- 27: avpag GGqkLD agqtw THM1_THADA : 27- 32: aalda GGrqLN sgesw THM2_THADA : 49- 54: aalda GGrqLN sgesw TLP_ORYSA : 48- 53: atpvg GGvqLS pgqtw TLP_WHEAT : 42- 47: gipvg GGfaLG sgqts TPM1_LYCES : 35- 40: stpig GGrrLD rgqtw ZEAM_MAIZE : 22- 27: svpvg GGrqLN L 12: 14.1091 21( 18) T-x(3,4)-A-x(3,4)-G-x-[AGV] Occurences: 21(18) IAAT_MAIZE : 12- 23: nqcpf Tvwa-AsvpvGgG rqlnr NP24_LYCES : 25- 36: nncpy Tvwa-AstpiGgG rrlnr OLPA_TOBAC : 34- 45: nncpy TvwaaAtpv-GgG rrler OLPA_TOBAC : 34- 45: nncpy Tvwa-AatpvGgG rrler OSMO_TOBAC : 33- 44: nncpy Tvwa-AstpiGgG rrldr P21_SOYBN : 12- 23: nrcty Tvwa-AsvpvGgG vqlnp PR1A_HORVU : 32- 43: nncgs Tiwp-AgipvGgG felgs PR1C_HORVU : 32- 43: nncgs Tiwp-AgipvGgG felgs PR5_ARATH : 34- 45: rnncp Ttvw-AgtlaGqG pklgd PRR1_TOBAC : 35- 47: ivnkc TytvwAaaspGgG rrlds PRR1_TOBAC : 37- 47: nkcty Tvwa-Aasp-GgG rrlds PRR2_TOBAC : 35- 47: ivnqc TytvwAaaspGgG rqlns PRR2_TOBAC : 37- 47: nqcty Tvwa-Aasp-GgG rqlns THHR_HORVU : 12- 23: nrcsy TvwpgAlpg-GgV rldpg THHS_HORVU : 12- 23: nkcqy TvwaaAvpa-GgG qklda THHS_HORVU : 12- 23: nkcqy Tvwa-AavpaGgG qklda THM1_THADA : 12- 22: nrcsy Tvwa-Aask-GdA aldag THM2_THADA : 34- 44: nrcsy Tvwa-Aask-GdA aldag TLP_ORYSA : 38- 49: nrcsf TvwpaAtpv-GgG vqlsp TLP_ORYSA : 38- 49: nrcsf Tvwp-AatpvGgG vqlsp TLP_ORYSA : 38- 50: nrcsf TvwpaAtpvgGgV qlspg TLP_ORYSA : 59- 71: pgqtw TinvpAgtssGrV wgrtg TLP_WHEAT : 32- 43: nncgf Tiwp-AgipvGgG falgs TPM1_LYCES : 25- 36: nncpy Tvwa-AstpiGgG rrldr ZEAM_MAIZE : 12- 23: nqcpf Tvwa-AsvpvGgG rqln M 13: 13.7103 19( 18) V-x(1,3)-A-x-[APTV]-x(2)-G Occurences: 19(18) IAAT_MAIZE : 13- 21: qcpft Vwa-AsVpvG ggrql NP24_LYCES : 26- 34: ncpyt Vwa-AsTpiG ggrrl OLPA_TOBAC : 35- 43: ncpyt Vwa-AaTpvG ggrrl OLPA_TOBAC : 35- 44: ncpyt VwaaAtPvgG grrle OSMO_TOBAC : 34- 42: ncpyt Vwa-AsTpiG ggrrl P21_SOYBN : 13- 21: rctyt Vwa-AsVpvG ggvql PR1A_HORVU : 56- 63: tssin Vp--AgTqaG riwar PR1C_HORVU : 56- 63: tssin Vp--AgTqaG riwar PR5_ARATH : 36- 43: ncptt Vw--AgTlaG qgpkl PRR1_TOBAC : 38- 45: kctyt Vw--AaAspG ggrrl PRR1_TOBAC : 38- 47: kctyt VwaaAsPggG rrlds PRR2_TOBAC : 38- 45: qctyt Vw--AaAspG ggrql PRR2_TOBAC : 38- 47: qctyt VwaaAsPggG rqlns THHR_HORVU : 13- 22: rcsyt VwpgAlPggG vrldp THHS_HORVU : 13- 21: kcqyt Vwa-AaVpaG ggqkl THHS_HORVU : 13- 22: kcqyt VwaaAvPagG gqkld THM1_THADA : 13- 20: rcsyt Vw--AaAskG daald THM2_THADA : 35- 42: rcsyt Vw--AaAskG daald TLP_ORYSA : 39- 47: rcsft Vwp-AaTpvG ggvql TLP_ORYSA : 39- 48: rcsft VwpaAtPvgG gvqls TLP_ORYSA : 62- 69: twtin Vp--AgTssG rvwgr TLP_WHEAT : 56- 63: tssin Vp--AgTqaG riwar TPM1_LYCES : 26- 34: ncpyt Vwa-AsTpiG ggrrl ZEAM_MAIZE : 13- 21: qcpft Vwa-AsVpvG ggrql N 14: 13.2701 32( 18) A-x(2,4)-P-x(1,2)-G-[CDGT] Occurences: 32(18) IAAT_MAIZE : 15- 22: pftvw Aasv-Pv-GG grqln IAAT_MAIZE : 15- 23: pftvw Aasv-PvgGG rqlnr IAAT_MAIZE : 16- 22: ftvwa Asv--Pv-GG grqln IAAT_MAIZE : 16- 23: ftvwa Asv--PvgGG rqlnr NP24_LYCES : 28- 35: pytvw Aast-Pi-GG grrln NP24_LYCES : 28- 36: pytvw Aast-PigGG rrlnr NP24_LYCES : 29- 35: ytvwa Ast--Pi-GG grrln NP24_LYCES : 29- 36: ytvwa Ast--PigGG rrlnr NP24_LYCES : 124- 131: ipmtf Aptk-Ps-GG kchai NP24_LYCES : 149- 156: gecpr Alkv-Pg-GC nnpct OLPA_TOBAC : 37- 44: pytvw Aaat-Pv-GG grrle OLPA_TOBAC : 37- 45: pytvw Aaat-PvgGG rrler OLPA_TOBAC : 38- 44: ytvwa Aat--Pv-GG grrle OLPA_TOBAC : 38- 45: ytvwa Aat--PvgGG rrler OSMO_TOBAC : 36- 43: pytvw Aast-Pi-GG grrld OSMO_TOBAC : 36- 44: pytvw Aast-PigGG rrldr OSMO_TOBAC : 37- 43: ytvwa Ast--Pi-GG grrld OSMO_TOBAC : 37- 44: ytvwa Ast--PigGG rrldr OSMO_TOBAC : 153- 161: ngecp AelrvPg-GC nnpct P21_SOYBN : 15- 22: tytvw Aasv-Pv-GG gvqln P21_SOYBN : 15- 23: tytvw Aasv-PvgGG vqlnp P21_SOYBN : 16- 22: ytvwa Asv--Pv-GG gvqln P21_SOYBN : 16- 23: ytvwa Asv--PvgGG vqlnp PR1A_HORVU : 36- 42: stiwp Agi--Pv-GG gfelg PR1A_HORVU : 36- 43: stiwp Agi--PvgGG felgs PR1C_HORVU : 36- 42: stiwp Agi--Pv-GG gfelg PR1C_HORVU : 36- 43: stiwp Agi--PvgGG felgs PR5_ARATH : 42- 50: wagtl Agqg-PklGD ggfel PRR1_TOBAC : 40- 47: tytvw Aaas-Pg-GG rrlds PRR1_TOBAC : 41- 47: ytvwa Aas--Pg-GG rrlds PRR2_TOBAC : 40- 47: tytvw Aaas-Pg-GG rqlns PRR2_TOBAC : 41- 47: ytvwa Aas--Pg-GG rqlns THHR_HORVU : 32- 39: pgqrw Alnm-Pa-GT agaav THHS_HORVU : 15- 22: qytvw Aaav-Pa-GG gqkld THHS_HORVU : 15- 23: qytvw Aaav-PagGG qklda THHS_HORVU : 16- 22: ytvwa Aav--Pa-GG gqkld THHS_HORVU : 16- 23: ytvwa Aav--PagGG qklda THM1_THADA : 136- 144: vgqcp AklkaPg-GG cndac THM1_THADA : 136- 145: vgqcp AklkaPggGC ndact THM2_THADA : 158- 166: vgqcp AklkaPg-GG cndac THM2_THADA : 158- 167: vgqcp AklkaPggGC ndact TLP_ORYSA : 42- 48: ftvwp Aat--Pv-GG gvqls TLP_ORYSA : 42- 49: ftvwp Aat--PvgGG vqlsp TLP_WHEAT : 36- 42: ftiwp Agi--Pv-GG gfalg TLP_WHEAT : 36- 43: ftiwp Agi--PvgGG falgs TPM1_LYCES : 28- 35: pytvw Aast-Pi-GG grrld TPM1_LYCES : 28- 36: pytvw Aast-PigGG rrldr TPM1_LYCES : 29- 35: ytvwa Ast--Pi-GG grrld TPM1_LYCES : 29- 36: ytvwa Ast--PigGG rrldr TPM1_LYCES : 124- 131: ipmtf Aptn-Ps-GG kchai ZEAM_MAIZE : 15- 22: pftvw Aasv-Pv-GG grqln ZEAM_MAIZE : 15- 23: pftvw Aasv-PvgGG rqln ZEAM_MAIZE : 16- 22: ftvwa Asv--Pv-GG grqln ZEAM_MAIZE : 16- 23: ftvwa Asv--PvgGG rqln O 15: 12.5102 21( 18) G-G-G Occurences: 21(18) IAAT_MAIZE : 21- 23: asvpv GGG rqlnr NP24_LYCES : 34- 36: astpi GGG rrlnr OLPA_TOBAC : 43- 45: aatpv GGG rrler OSMO_TOBAC : 42- 44: astpi GGG rrldr P21_SOYBN : 21- 23: asvpv GGG vqlnp PR1A_HORVU : 41- 43: agipv GGG felgs PR1A_HORVU : 107- 109: aefti GGG stqdf PR1C_HORVU : 41- 43: agipv GGG felgs PR1C_HORVU : 107- 109: aefti GGG stqdf PR5_ARATH : 101- 103: glrcn GGG vppvt PRR1_TOBAC : 45- 47: aaasp GGG rrlds PRR2_TOBAC : 45- 47: aaasp GGG rqlns THHR_HORVU : 20- 22: pgalp GGG vrldp THHS_HORVU : 21- 23: aavpa GGG qklda THM1_THADA : 142- 144: klkap GGG cndac THM2_THADA : 164- 166: klkap GGG cndac TLP_ORYSA : 47- 49: aatpv GGG vqlsp TLP_WHEAT : 41- 43: agipv GGG falgs TLP_WHEAT : 107- 109: aeyti GGG stqdf TPM1_LYCES : 34- 36: astpi GGG rrldr ZEAM_MAIZE : 21- 23: asvpv GGG rqln P 16: 11.5102 22( 18) T-x(2,4)-A-x(4)-G Occurences: 22(18) IAAT_MAIZE : 12- 21: nqcpf Tvwa-AsvpvG ggrql NP24_LYCES : 25- 34: nncpy Tvwa-AstpiG ggrrl OLPA_TOBAC : 34- 43: nncpy Tvwa-AatpvG ggrrl OLPA_TOBAC : 34- 44: nncpy TvwaaAtpvgG grrle OSMO_TOBAC : 33- 42: nncpy Tvwa-AstpiG ggrrl P21_SOYBN : 12- 21: nrcty Tvwa-AsvpvG ggvql PR1A_HORVU : 32- 41: nncgs Tiwp-AgipvG ggfel PR1C_HORVU : 32- 41: nncgs Tiwp-AgipvG ggfel PR5_ARATH : 34- 43: rnncp Ttvw-AgtlaG qgpkl PR5_ARATH : 35- 43: nncpt Tvw--AgtlaG qgpkl PRR1_TOBAC : 35- 45: ivnkc TytvwAaaspG ggrrl PRR1_TOBAC : 37- 45: nkcty Tvw--AaaspG ggrrl PRR1_TOBAC : 37- 46: nkcty Tvwa-AaspgG grrld PRR1_TOBAC : 37- 47: nkcty TvwaaAspggG rrlds PRR2_TOBAC : 35- 45: ivnqc TytvwAaaspG ggrql PRR2_TOBAC : 37- 45: nqcty Tvw--AaaspG ggrql PRR2_TOBAC : 37- 46: nqcty Tvwa-AaspgG grqln PRR2_TOBAC : 37- 47: nqcty TvwaaAspggG rqlns THHR_HORVU : 12- 22: nrcsy TvwpgAlpggG vrldp THHS_HORVU : 12- 21: nkcqy Tvwa-AavpaG ggqkl THHS_HORVU : 12- 22: nkcqy TvwaaAvpagG gqkld THM1_THADA : 12- 20: nrcsy Tvw--AaaskG daald THM2_THADA : 34- 42: nrcsy Tvw--AaaskG daald TLP_ORYSA : 38- 47: nrcsf Tvwp-AatpvG ggvql TLP_ORYSA : 38- 48: nrcsf TvwpaAtpvgG gvqls TLP_ORYSA : 59- 69: pgqtw TinvpAgtssG rvwgr TLP_WHEAT : 32- 41: nncgf Tiwp-AgipvG ggfal TPM1_LYCES : 25- 34: nncpy Tvwa-AstpiG ggrrl ZEAM_MAIZE : 12- 21: nqcpf Tvwa-AsvpvG ggrql Q 17: 10.5705 30( 18) V-x-[ADGP]-G Occurences: 30(18) IAAT_MAIZE : 20- 23: aasvp VgGG rqlnr NP24_LYCES : 152- 155: pralk VpGG cnnpc OLPA_TOBAC : 42- 45: aaatp VgGG rrler OLPA_TOBAC : 122- 125: fwdis ViDG fnipm OLPA_TOBAC : 161- 164: pgslr VpGG cnnpc OSMO_TOBAC : 157- 160: paelr VpGG cnnpc P21_SOYBN : 20- 23: aasvp VgGG vqlnp P21_SOYBN : 36- 39: swsvd VpAG tkgar PR1A_HORVU : 40- 43: pagip VgGG felgs PR1A_HORVU : 56- 59: tssin VpAG tqagr PR1A_HORVU : 119- 122: fydis ViDG fnlam PR1C_HORVU : 40- 43: pagip VgGG felgs PR1C_HORVU : 56- 59: tssin VpAG tqagr PR1C_HORVU : 119- 122: fydis ViDG fnlam PR5_ARATH : 36- 39: ncptt VwAG tlagq PR5_ARATH : 115- 118: aeftl VgDG gkdfy PRR1_TOBAC : 60- 63: swsin VnPG tvqar PRR2_TOBAC : 60- 63: swsin VnPG tvqar THHR_HORVU : 13- 16: rcsyt VwPG alpgg THHS_HORVU : 18- 21: vwaaa VpAG ggqkl THM1_THADA : 41- 44: swtin VePG tnggk THM2_THADA : 63- 66: swtin VePG tkggk TLP_ORYSA : 46- 49: paatp VgGG vqlsp TLP_ORYSA : 62- 65: twtin VpAG tssgr TLP_ORYSA : 124- 127: fydls ViDG ynvam TLP_WHEAT : 40- 43: pagip VgGG falgs TLP_WHEAT : 56- 59: tssin VpAG tqagr TLP_WHEAT : 119- 122: fydis ViDG fnlam TPM1_LYCES : 152- 155: pgslr VpGG cnnpc ZEAM_MAIZE : 20- 23: aasvp VgGG rqln R 18: 9.7665 40( 18) A-A-[ACDGSTV] Occurences: 40(18) IAAT_MAIZE : 15- 17: pftvw AAS vpvgg NP24_LYCES : 13- 15: vtyty AAT ievrn NP24_LYCES : 28- 30: pytvw AAS tpigg NP24_LYCES : 68- 70: gcnfn AAG rgtcq OLPA_TOBAC : 37- 39: pytvw AAA tpvgg OLPA_TOBAC : 38- 40: ytvwa AAT pvggg OSMO_TOBAC : 21- 23: vtyty AAT ievrn OSMO_TOBAC : 36- 38: pytvw AAS tpigg OSMO_TOBAC : 76- 78: ncnfn AAG rgtcq P21_SOYBN : 15- 17: tytvw AAS vpvgg PR1A_HORVU : 15- 17: llavf AAG asaat PR1A_HORVU : 20- 22: aagas AAT fnikn PR1C_HORVU : 15- 17: llavf AAG asaat PR1C_HORVU : 20- 22: aagas AAT fnikn PR5_ARATH : 157- 159: vsdln AAC pdmlk PRR1_TOBAC : 25- 27: vavth AAT fdivn PRR1_TOBAC : 40- 42: tytvw AAA spggg PRR1_TOBAC : 41- 43: ytvwa AAS pgggr PRR2_TOBAC : 25- 27: vavth AAT fdivn PRR2_TOBAC : 40- 42: tytvw AAA spggg PRR2_TOBAC : 41- 43: ytvwa AAS pgggr THHR_HORVU : 42- 44: agtag AAV THHS_HORVU : 15- 17: qytvw AAA vpagg THHS_HORVU : 16- 18: ytvwa AAV paggg THM1_THADA : 15- 17: sytvw AAA skgda THM1_THADA : 16- 18: ytvwa AAS kgdaa THM1_THADA : 127- 129: rgvrc AAD ivgqc THM2_THADA : 2- 4: m AAT tcfff THM2_THADA : 22- 24: ltlsr AAT feivn THM2_THADA : 37- 39: sytvw AAA skgda THM2_THADA : 38- 40: ytvwa AAS kgdaa THM2_THADA : 149- 151: rgvrc AAD ivgqc TLP_ORYSA : 20- 22: lvatl AAG ganaa TLP_ORYSA : 26- 28: aggan AAT ftitn TLP_ORYSA : 42- 44: ftvwp AAT pvggg TLP_WHEAT : 15- 17: llavf AAG asaat TLP_WHEAT : 20- 22: aagas AAT fnikn TPM1_LYCES : 13- 15: vtyty AAT fevrn TPM1_LYCES : 28- 30: pytvw AAS tpigg ZEAM_MAIZE : 15- 17: pftvw AAS vpvgg S 19: 9.5786 34( 18) G-x(2)-L-[ADEGNQST] Occurences: 34(18) IAAT_MAIZE : 23- 27: vpvgg GrqLN rgesw NP24_LYCES : 36- 40: tpigg GrrLN rgqtw NP24_LYCES : 80- 84: qtgdc GgvLQ ctgwg OLPA_TOBAC : 45- 49: tpvgg GrrLE rgqsw OLPA_TOBAC : 89- 93: qtgdc GgvLE ckgwg OSMO_TOBAC : 44- 48: tpigg GrrLD rgqtw OSMO_TOBAC : 88- 92: qtgdc GgvLQ ctgwg P21_SOYBN : 23- 27: vpvgg GvqLN pgqsw P21_SOYBN : 67- 71: qtgdc GgvLD ckayg PR1A_HORVU : 43- 47: ipvgg GfeLG sgqts PR1A_HORVU : 86- 90: qtgdc GgqLS cslsg PR1A_HORVU : 122- 126: isvid GfnLA mdfsc PR1A_HORVU : 134- 138: fscst GdaLQ crdps PR1C_HORVU : 43- 47: ipvgg GfeLG sgqts PR1C_HORVU : 86- 90: qtgdc GgqLS cslsg PR1C_HORVU : 122- 126: isvid GfnLA mdfsc PR1C_HORVU : 134- 138: fscst GdaLQ crdps PR5_ARATH : 45- 49: tlagq GpkLG dggfe PR5_ARATH : 52- 56: klgdg GfeLT pgasr PRR1_TOBAC : 47- 51: aspgg GrrLD sgqsw PRR2_TOBAC : 47- 51: aspgg GrqLN sgqsw THHR_HORVU : 22- 26: alpgg GvrLD pgqrw THHS_HORVU : 23- 27: vpagg GqkLD agqtw THM1_THADA : 28- 32: aldag GrqLN sgesw THM2_THADA : 50- 54: aldag GrqLN sgesw THM2_THADA : 94- 98: rtgdc GglLQ ckrfg TLP_ORYSA : 49- 53: tpvgg GvqLS pgqtw TLP_WHEAT : 43- 47: ipvgg GfaLG sgqts TLP_WHEAT : 86- 90: qtgdc GgqLS cslsg TLP_WHEAT : 122- 126: isvid GfnLA mdfsc TLP_WHEAT : 134- 138: fscst GdaLQ crdps TPM1_LYCES : 36- 40: tpigg GrrLD rgqtw TPM1_LYCES : 80- 84: qtgdc GgvLQ ctgwg ZEAM_MAIZE : 23- 27: vpvgg GrqLN T 20: 8.3401 35( 18) G-x(2)-L Occurences: 35(18) IAAT_MAIZE : 23- 26: vpvgg GrqL nrges NP24_LYCES : 36- 39: tpigg GrrL nrgqt NP24_LYCES : 80- 83: qtgdc GgvL qctgw OLPA_TOBAC : 45- 48: tpvgg GrrL ergqs OLPA_TOBAC : 89- 92: qtgdc GgvL eckgw OSMO_TOBAC : 44- 47: tpigg GrrL drgqt OSMO_TOBAC : 88- 91: qtgdc GgvL qctgw P21_SOYBN : 23- 26: vpvgg GvqL npgqs P21_SOYBN : 67- 70: qtgdc GgvL dckay PR1A_HORVU : 43- 46: ipvgg GfeL gsgqt PR1A_HORVU : 86- 89: qtgdc GgqL scsls PR1A_HORVU : 122- 125: isvid GfnL amdfs PR1A_HORVU : 134- 137: fscst GdaL qcrdp PR1C_HORVU : 43- 46: ipvgg GfeL gsgqt PR1C_HORVU : 86- 89: qtgdc GgqL scsls PR1C_HORVU : 122- 125: isvid GfnL amdfs PR1C_HORVU : 134- 137: fscst GdaL qcrdp PR5_ARATH : 45- 48: tlagq GpkL gdggf PR5_ARATH : 52- 55: klgdg GfeL tpgas PRR1_TOBAC : 47- 50: aspgg GrrL dsgqs PRR2_TOBAC : 47- 50: aspgg GrqL nsgqs THHR_HORVU : 22- 25: alpgg GvrL dpgqr THHS_HORVU : 23- 26: vpagg GqkL dagqt THM1_THADA : 28- 31: aldag GrqL nsges THM1_THADA : 72- 75: ktgdc GglL rckrf THM2_THADA : 50- 53: aldag GrqL nsges THM2_THADA : 94- 97: rtgdc GglL qckrf TLP_ORYSA : 49- 52: tpvgg GvqL spgqt TLP_WHEAT : 43- 46: ipvgg GfaL gsgqt TLP_WHEAT : 86- 89: qtgdc GgqL scsls TLP_WHEAT : 122- 125: isvid GfnL amdfs TLP_WHEAT : 134- 137: fscst GdaL qcrdp TPM1_LYCES : 36- 39: tpigg GrrL drgqt TPM1_LYCES : 80- 83: qtgdc GgvL qctgw ZEAM_MAIZE : 23- 26: vpvgg GrqL n Number of patterns evaluated by Pratt:196 Total running time: 1 seconds