------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file TFIIS PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TFIIS.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RPO5_VACCC 259 RPO5_VACCV 259 RPO5_VARV 259 TFS2_ASFB7 243 TFS2_DROME 313 TFS2_HUMAN 301 TFS2_MOUSE 301 TFS2_SULAC 202 TFS2_YEAST 309 TFSL_MOUSE 235 TFSM_MOUSE 289 Pratt run started at Thu Feb 6 21:25:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 11( 11) Q-T-R-x(0,1)-A-x(0,1)-D-E-P 2: 24.0203 11( 11) T-R-x(0,1)-A-x(0,1)-D-E-P 3: 19.8503 11( 11) R-x(0,1)-A-x(0,1)-D-E-P 4: 16.1802 14( 11) A-x(0,1)-D-E-P 5: 16.1802 12( 11) Q-x(0,1)-T-R-x(4)-P 6: 15.6802 11( 11) Y-x(3,4)-Q-T-x(1,2)-A 7: 15.1802 12( 11) K-C-x(1,3)-K-x(4,5)-Y 8: 15.1802 12( 11) T-x(1,3)-A-x(0,1)-D-x-P 9: 12.5102 14( 11) D-E-P 10: 12.5102 11( 11) A-D-x-P 11: 12.5102 12( 11) T-R-x(4)-P 12: 12.0102 14( 11) C-x(2)-C-x(0,1)-K 13: 12.0102 11( 11) F-x(2,3)-C-x(3)-G 14: 12.0102 11( 11) T-x(4)-C-x(0,1)-K 15: 12.0102 12( 11) E-x(2,3)-T-x(4)-C 16: 12.0102 11( 11) E-x(1,2)-T-x-F 17: 12.0102 16( 11) A-x(0,1)-D-x-P 18: 12.0102 12( 11) T-R-x(0,1)-A 19: 11.5102 11( 11) C-x(0,1)-K-x(4,5)-Y 20: 11.5102 15( 11) C-x-K-x(0,2)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 31.3696 11( 11) Q-T-R-[AS]-[AL]-D-E-P B 2: 29.5892 11( 11) T-R-x(0,1)-A-x-[DE]-[EP]-x-[PST]-x-[FIV]-x(2)-[ACT]-x(3)-[CG] C 3: 28.1904 11( 11) Q-T-R-x(0,1)-A-x(0,1)-D-E-P D 4: 27.1995 11( 11) T-R-[AS]-[AL]-D-E-P E 5: 24.0203 11( 11) T-R-x(0,1)-A-x(0,1)-D-E-P F 6: 20.0983 11( 11) Y-x(3,4)-Q-T-x(1,2)-A-x-[ADET]-x(2)-[DNST] G 7: 19.8503 11( 11) Q-T-R-x(0,1)-A-x(0,1)-D H 8: 19.8503 11( 11) R-x(0,1)-A-x(0,1)-D-E-P I 9: 19.8503 11( 11) T-x(1,2)-A-x(0,1)-D-E-P J 10: 16.1802 14( 11) A-x(0,1)-D-E-P K 11: 15.6852 11( 11) A-D-[ET]-P L 12: 15.6852 11( 11) D-E-P-x-[ET] M 13: 15.6802 11( 11) T-R-x(0,1)-A-x(0,1)-D N 14: 15.2832 11( 11) E-x(2,3)-T-x(4)-C-x(3)-[GN] O 15: 15.2707 11( 11) T-x(4)-C-x(0,1)-K-[CS] P 16: 15.1802 12( 11) K-C-x(1,3)-K-x(4,5)-Y Q 17: 14.7639 11( 11) F-x(2,3)-C-x(3)-G-x(2)-[FWY] R 18: 13.8914 11( 11) C-[AGPST]-x-C-x(0,1)-K S 19: 12.0102 11( 11) T-x(4)-C-x(0,1)-K T 20: 12.0102 12( 11) E-x(2,3)-T-x(4)-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 31.3696 11( 11) Q-T-R-[AS]-[AL]-D-E-P Occurences: 11(11) RPO5_VACCC : 173- 180: tpmmi QTRAADEP plvrh RPO5_VACCV : 173- 180: tpmmi QTRAADEP plvrh RPO5_VARV : 173- 180: tpmmi QTRAADEP plvrh TFS2_ASFB7 : 220- 227: tyrev QTRALDEP stifc TFS2_DROME : 289- 296: tynql QTRSADEP mttfv TFS2_HUMAN : 277- 284: tytqv QTRSADEP mttfv TFS2_MOUSE : 277- 284: tytqv QTRSADEP mttfv TFS2_SULAC : 177- 184: yfwil QTRSADEP atrfy TFS2_YEAST : 285- 292: syyql QTRSADEP lttfc TFSL_MOUSE : 211- 218: tytqv QTRSADEP mttfv TFSM_MOUSE : 265- 272: tynqv QTRSADEP mttfv B 2: 29.5892 11( 11) T-R-x(0,1)-A-x-[DE]-[EP]-x-[PST]-x-[FIV]-x(2)-[ACT]-x(3)-[CG] Occurences: 11(11) RPO5_VACCC : 174- 190: pmmiq TR-AaDEpPlVrhAcrdC kqhfk RPO5_VACCV : 174- 190: pmmiq TR-AaDEpPlVrhAcrdC kqhfk RPO5_VARV : 174- 190: pmmiq TR-AaDEpPlVrhAcrdC kqhfk TFS2_ASFB7 : 221- 237: yrevq TR-AlDEpStIfcTckkC ghefi TFS2_DROME : 290- 307: ynqlq TRsAdEPmTtFvmCnecG nrwkf TFS2_HUMAN : 278- 295: ytqvq TRsAdEPmTtFvvCnecG nrwkf TFS2_MOUSE : 278- 295: ytqvq TRsAdEPmTtFvvCnecG nrwkf TFS2_SULAC : 178- 195: fwilq TRsAdEPaTrFykCtkcG kvwre TFS2_YEAST : 286- 303: yyqlq TRsAdEPlTtFctCeacG nrwkf TFSL_MOUSE : 212- 229: ytqvq TRsAdEPmTtFvvCnecG nrwkf TFSM_MOUSE : 266- 283: ynqvq TRsAdEPmTtFvlCnecG nrwkf C 3: 28.1904 11( 11) Q-T-R-x(0,1)-A-x(0,1)-D-E-P Occurences: 11(11) RPO5_VACCC : 173- 180: tpmmi QTRaA-DEP plvrh RPO5_VACCC : 173- 180: tpmmi QTR-AaDEP plvrh RPO5_VACCV : 173- 180: tpmmi QTRaA-DEP plvrh RPO5_VACCV : 173- 180: tpmmi QTR-AaDEP plvrh RPO5_VARV : 173- 180: tpmmi QTRaA-DEP plvrh RPO5_VARV : 173- 180: tpmmi QTR-AaDEP plvrh TFS2_ASFB7 : 220- 227: tyrev QTR-AlDEP stifc TFS2_DROME : 289- 296: tynql QTRsA-DEP mttfv TFS2_HUMAN : 277- 284: tytqv QTRsA-DEP mttfv TFS2_MOUSE : 277- 284: tytqv QTRsA-DEP mttfv TFS2_SULAC : 177- 184: yfwil QTRsA-DEP atrfy TFS2_YEAST : 285- 292: syyql QTRsA-DEP lttfc TFSL_MOUSE : 211- 218: tytqv QTRsA-DEP mttfv TFSM_MOUSE : 265- 272: tynqv QTRsA-DEP mttfv D 4: 27.1995 11( 11) T-R-[AS]-[AL]-D-E-P Occurences: 11(11) RPO5_VACCC : 174- 180: pmmiq TRAADEP plvrh RPO5_VACCV : 174- 180: pmmiq TRAADEP plvrh RPO5_VARV : 174- 180: pmmiq TRAADEP plvrh TFS2_ASFB7 : 221- 227: yrevq TRALDEP stifc TFS2_DROME : 290- 296: ynqlq TRSADEP mttfv TFS2_HUMAN : 278- 284: ytqvq TRSADEP mttfv TFS2_MOUSE : 278- 284: ytqvq TRSADEP mttfv TFS2_SULAC : 178- 184: fwilq TRSADEP atrfy TFS2_YEAST : 286- 292: yyqlq TRSADEP lttfc TFSL_MOUSE : 212- 218: ytqvq TRSADEP mttfv TFSM_MOUSE : 266- 272: ynqvq TRSADEP mttfv E 5: 24.0203 11( 11) T-R-x(0,1)-A-x(0,1)-D-E-P Occurences: 11(11) RPO5_VACCC : 174- 180: pmmiq TRaA-DEP plvrh RPO5_VACCC : 174- 180: pmmiq TR-AaDEP plvrh RPO5_VACCV : 174- 180: pmmiq TRaA-DEP plvrh RPO5_VACCV : 174- 180: pmmiq TR-AaDEP plvrh RPO5_VARV : 174- 180: pmmiq TRaA-DEP plvrh RPO5_VARV : 174- 180: pmmiq TR-AaDEP plvrh TFS2_ASFB7 : 221- 227: yrevq TR-AlDEP stifc TFS2_DROME : 290- 296: ynqlq TRsA-DEP mttfv TFS2_HUMAN : 278- 284: ytqvq TRsA-DEP mttfv TFS2_MOUSE : 278- 284: ytqvq TRsA-DEP mttfv TFS2_SULAC : 178- 184: fwilq TRsA-DEP atrfy TFS2_YEAST : 286- 292: yyqlq TRsA-DEP lttfc TFSL_MOUSE : 212- 218: ytqvq TRsA-DEP mttfv TFSM_MOUSE : 266- 272: ynqvq TRsA-DEP mttfv F 6: 20.0983 11( 11) Y-x(3,4)-Q-T-x(1,2)-A-x-[ADET]-x(2)-[DNST] Occurences: 11(11) RPO5_VACCC : 9- 23: vyiss YssneQTsmAvAatD irell RPO5_VACCV : 9- 23: vyiss YssneQTsmAvTatD irell RPO5_VARV : 9- 23: vyiss YssneQTsmAvAatN irell TFS2_ASFB7 : 216- 228: qrmct Yrev-QTr-AlDepS tifct TFS2_DROME : 285- 298: krnct Ynql-QTrsAdEpmT tfvmc TFS2_HUMAN : 273- 286: kknct Ytqv-QTrsAdEpmT tfvvc TFS2_MOUSE : 273- 286: kknct Ytqv-QTrsAdEpmT tfvvc TFS2_SULAC : 172- 186: gndea YfwilQTrsAdEpaT rfykc TFS2_YEAST : 281- 294: ekkvs Yyql-QTrsAdEplT tfctc TFSL_MOUSE : 207- 220: kknct Ytqv-QTrsAdEpmT tfvvc TFSM_MOUSE : 261- 274: kknct Ynqv-QTrsAdEpmT tfvlc G 7: 19.8503 11( 11) Q-T-R-x(0,1)-A-x(0,1)-D Occurences: 11(11) RPO5_VACCC : 173- 178: tpmmi QTRaA-D epplv RPO5_VACCC : 173- 178: tpmmi QTR-AaD epplv RPO5_VACCV : 173- 178: tpmmi QTRaA-D epplv RPO5_VACCV : 173- 178: tpmmi QTR-AaD epplv RPO5_VARV : 173- 178: tpmmi QTRaA-D epplv RPO5_VARV : 173- 178: tpmmi QTR-AaD epplv TFS2_ASFB7 : 220- 225: tyrev QTR-AlD epsti TFS2_DROME : 289- 294: tynql QTRsA-D epmtt TFS2_HUMAN : 277- 282: tytqv QTRsA-D epmtt TFS2_MOUSE : 277- 282: tytqv QTRsA-D epmtt TFS2_SULAC : 177- 182: yfwil QTRsA-D epatr TFS2_YEAST : 285- 290: syyql QTRsA-D epltt TFSL_MOUSE : 211- 216: tytqv QTRsA-D epmtt TFSM_MOUSE : 265- 270: tynqv QTRsA-D epmtt H 8: 19.8503 11( 11) R-x(0,1)-A-x(0,1)-D-E-P Occurences: 11(11) RPO5_VACCC : 175- 180: mmiqt RaA-DEP plvrh RPO5_VACCC : 175- 180: mmiqt R-AaDEP plvrh RPO5_VACCV : 175- 180: mmiqt RaA-DEP plvrh RPO5_VACCV : 175- 180: mmiqt R-AaDEP plvrh RPO5_VARV : 175- 180: mmiqt RaA-DEP plvrh RPO5_VARV : 175- 180: mmiqt R-AaDEP plvrh TFS2_ASFB7 : 222- 227: revqt R-AlDEP stifc TFS2_DROME : 291- 296: nqlqt RsA-DEP mttfv TFS2_HUMAN : 279- 284: tqvqt RsA-DEP mttfv TFS2_MOUSE : 279- 284: tqvqt RsA-DEP mttfv TFS2_SULAC : 179- 184: wilqt RsA-DEP atrfy TFS2_YEAST : 287- 292: yqlqt RsA-DEP lttfc TFSL_MOUSE : 213- 218: tqvqt RsA-DEP mttfv TFSM_MOUSE : 267- 272: nqvqt RsA-DEP mttfv I 9: 19.8503 11( 11) T-x(1,2)-A-x(0,1)-D-E-P Occurences: 11(11) RPO5_VACCC : 174- 180: pmmiq TraA-DEP plvrh RPO5_VACCC : 174- 180: pmmiq Tr-AaDEP plvrh RPO5_VACCV : 174- 180: pmmiq TraA-DEP plvrh RPO5_VACCV : 174- 180: pmmiq Tr-AaDEP plvrh RPO5_VARV : 174- 180: pmmiq TraA-DEP plvrh RPO5_VARV : 174- 180: pmmiq Tr-AaDEP plvrh TFS2_ASFB7 : 221- 227: yrevq Tr-AlDEP stifc TFS2_DROME : 290- 296: ynqlq TrsA-DEP mttfv TFS2_HUMAN : 278- 284: ytqvq TrsA-DEP mttfv TFS2_MOUSE : 278- 284: ytqvq TrsA-DEP mttfv TFS2_SULAC : 178- 184: fwilq TrsA-DEP atrfy TFS2_YEAST : 286- 292: yyqlq TrsA-DEP lttfc TFSL_MOUSE : 212- 218: ytqvq TrsA-DEP mttfv TFSM_MOUSE : 266- 272: ynqvq TrsA-DEP mttfv J 10: 16.1802 14( 11) A-x(0,1)-D-E-P Occurences: 14(11) RPO5_VACCC : 176- 180: miqtr AaDEP plvrh RPO5_VACCC : 177- 180: iqtra A-DEP plvrh RPO5_VACCV : 176- 180: miqtr AaDEP plvrh RPO5_VACCV : 177- 180: iqtra A-DEP plvrh RPO5_VARV : 176- 180: miqtr AaDEP plvrh RPO5_VARV : 177- 180: iqtra A-DEP plvrh TFS2_ASFB7 : 223- 227: evqtr AlDEP stifc TFS2_DROME : 293- 296: lqtrs A-DEP mttfv TFS2_HUMAN : 281- 284: vqtrs A-DEP mttfv TFS2_MOUSE : 281- 284: vqtrs A-DEP mttfv TFS2_SULAC : 181- 184: lqtrs A-DEP atrfy TFS2_YEAST : 289- 292: lqtrs A-DEP lttfc TFSL_MOUSE : 215- 218: vqtrs A-DEP mttfv TFSM_MOUSE : 269- 272: vqtrs A-DEP mttfv K 11: 15.6852 11( 11) A-D-[ET]-P Occurences: 11(11) RPO5_VACCC : 177- 180: iqtra ADEP plvrh RPO5_VACCV : 177- 180: iqtra ADEP plvrh RPO5_VARV : 177- 180: iqtra ADEP plvrh TFS2_ASFB7 : 35- 38: ecflq ADTP kkylq TFS2_DROME : 293- 296: lqtrs ADEP mttfv TFS2_HUMAN : 281- 284: vqtrs ADEP mttfv TFS2_MOUSE : 281- 284: vqtrs ADEP mttfv TFS2_SULAC : 181- 184: lqtrs ADEP atrfy TFS2_YEAST : 289- 292: lqtrs ADEP lttfc TFSL_MOUSE : 215- 218: vqtrs ADEP mttfv TFSM_MOUSE : 269- 272: vqtrs ADEP mttfv L 12: 15.6852 11( 11) D-E-P-x-[ET] Occurences: 11(11) RPO5_VACCC : 252- 256: tfdrn DEPpE dde RPO5_VACCV : 252- 256: tfdrn DEPpE dde RPO5_VARV : 252- 256: tfdrn DEPpE dde TFS2_ASFB7 : 225- 229: qtral DEPsT ifctc TFS2_DROME : 294- 298: qtrsa DEPmT tfvmc TFS2_HUMAN : 282- 286: qtrsa DEPmT tfvvc TFS2_MOUSE : 282- 286: qtrsa DEPmT tfvvc TFS2_SULAC : 182- 186: qtrsa DEPaT rfykc TFS2_YEAST : 290- 294: qtrsa DEPlT tfctc TFSL_MOUSE : 216- 220: qtrsa DEPmT tfvvc TFSM_MOUSE : 270- 274: qtrsa DEPmT tfvlc M 13: 15.6802 11( 11) T-R-x(0,1)-A-x(0,1)-D Occurences: 11(11) RPO5_VACCC : 174- 178: pmmiq TRaA-D epplv RPO5_VACCC : 174- 178: pmmiq TR-AaD epplv RPO5_VACCV : 174- 178: pmmiq TRaA-D epplv RPO5_VACCV : 174- 178: pmmiq TR-AaD epplv RPO5_VARV : 174- 178: pmmiq TRaA-D epplv RPO5_VARV : 174- 178: pmmiq TR-AaD epplv TFS2_ASFB7 : 221- 225: yrevq TR-AlD epsti TFS2_DROME : 290- 294: ynqlq TRsA-D epmtt TFS2_HUMAN : 278- 282: ytqvq TRsA-D epmtt TFS2_MOUSE : 278- 282: ytqvq TRsA-D epmtt TFS2_SULAC : 178- 182: fwilq TRsA-D epatr TFS2_YEAST : 286- 290: yyqlq TRsA-D epltt TFSL_MOUSE : 212- 216: ytqvq TRsA-D epmtt TFSM_MOUSE : 266- 270: ynqvq TRsA-D epmtt N 14: 15.2832 11( 11) E-x(2,3)-T-x(4)-C-x(3)-[GN] Occurences: 11(11) RPO5_VACCC : 153- 166: fnvld EkynTpcpnCksrN ttpmm RPO5_VACCV : 153- 166: fnvld EkynTpcpnCksrN ttpmm RPO5_VARV : 153- 166: fnvln EkynTpcpnCksrN ttpmm TFS2_ASFB7 : 226- 238: trald Eps-TifctCkkcG hefig TFS2_DROME : 295- 307: trsad Epm-TtfvmCnecG nrwkf TFS2_HUMAN : 283- 295: trsad Epm-TtfvvCnecG nrwkf TFS2_MOUSE : 283- 295: trsad Epm-TtfvvCnecG nrwkf TFS2_SULAC : 183- 195: trsad Epa-TrfykCtkcG kvwre TFS2_YEAST : 291- 303: trsad Epl-TtfctCeacG nrwkf TFSL_MOUSE : 217- 229: trsad Epm-TtfvvCnecG nrwkf TFSM_MOUSE : 271- 283: trsad Epm-TtfvlCnecG nrwkf O 15: 15.2707 11( 11) T-x(4)-C-x(0,1)-K-[CS] Occurences: 11(11) RPO5_VACCC : 157- 164: dekyn TpcpnC-KS rnttp RPO5_VACCV : 157- 164: dekyn TpcpnC-KS rnttp RPO5_VARV : 157- 164: nekyn TpcpnC-KS rnttp TFS2_ASFB7 : 229- 237: ldeps TifctCkKC ghefi TFS2_DROME : 270- 278: vqgtk TdllkCaKC kkrnc TFS2_HUMAN : 258- 266: tggtq TdlftCgKC kkknc TFS2_MOUSE : 258- 266: tggtq TdlftCgKC kkknc TFS2_SULAC : 186- 194: adepa TrfykCtKC gkvwr TFS2_YEAST : 266- 274: iersv TdrftCgKC kekkv TFSL_MOUSE : 192- 200: tggtq TdlftCgKC kkknc TFSM_MOUSE : 246- 254: tggtt TdllrCsKC kkknc P 16: 15.1802 12( 11) K-C-x(1,3)-K-x(4,5)-Y Occurences: 12(11) RPO5_VACCC : 126- 134: llfgi KCi--Kkgve-Y nidki RPO5_VACCV : 126- 134: llfgi KCi--Kkgve-Y nidki RPO5_VARV : 126- 134: llfgi KCi--Kkgve-Y nidki TFS2_ASFB7 : 205- 216: tsqly KCpncKqrmctY revqt TFS2_DROME : 274- 285: ktdll KCakcKkrnctY nqlqt TFS2_DROME : 277- 285: llkca KCk--Krnct-Y nqlqt TFS2_HUMAN : 265- 273: lftcg KCk--Kknct-Y tqvqt TFS2_MOUSE : 265- 273: lftcg KCk--Kknct-Y tqvqt TFS2_SULAC : 193- 201: fykct KCg--Kvwre-Y e TFS2_YEAST : 273- 282: rftcg KCke-Kkvsy-Y qlqtr TFSL_MOUSE : 199- 207: lftcg KCk--Kknct-Y tqvqt TFSM_MOUSE : 253- 261: llrcs KCk--Kknct-Y nqvqt Q 17: 14.7639 11( 11) F-x(2,3)-C-x(3)-G-x(2)-[FWY] Occurences: 11(11) RPO5_VACCC : 123- 134: lryll FgikCikkGveY nidki RPO5_VACCV : 123- 134: lryll FgikCikkGveY nidki RPO5_VARV : 123- 134: lryll FgikCikkGveY nidki TFS2_ASFB7 : 231- 241: epsti Fct-CkkcGheF ig TFS2_DROME : 300- 310: epmtt Fvm-CnecGnrW kfc TFS2_HUMAN : 288- 298: epmtt Fvv-CnecGnrW kfc TFS2_MOUSE : 288- 298: epmtt Fvv-CnecGnrW kfc TFS2_SULAC : 188- 198: epatr Fyk-CtkcGkvW reye TFS2_YEAST : 296- 306: epltt Fct-CeacGnrW kfs TFSL_MOUSE : 222- 232: epmtt Fvv-CnecGnrW kfc TFSM_MOUSE : 276- 286: epmtt Fvl-CnecGnrW kfc R 18: 13.8914 11( 11) C-[AGPST]-x-C-x(0,1)-K Occurences: 11(11) RPO5_VACCC : 159- 163: kyntp CPnC-K srntt RPO5_VACCV : 159- 163: kyntp CPnC-K srntt RPO5_VARV : 159- 163: kyntp CPnC-K srntt TFS2_ASFB7 : 206- 210: sqlyk CPnC-K qrmct TFS2_DROME : 275- 279: tdllk CAkC-K krnct TFS2_DROME : 275- 280: tdllk CAkCkK rncty TFS2_HUMAN : 263- 267: tdlft CGkC-K kknct TFS2_HUMAN : 263- 268: tdlft CGkCkK kncty TFS2_MOUSE : 263- 267: tdlft CGkC-K kknct TFS2_MOUSE : 263- 268: tdlft CGkCkK kncty TFS2_SULAC : 191- 196: trfyk CTkCgK vwrey TFS2_YEAST : 271- 275: tdrft CGkC-K ekkvs TFSL_MOUSE : 197- 201: tdlft CGkC-K kknct TFSL_MOUSE : 197- 202: tdlft CGkCkK kncty TFSM_MOUSE : 251- 255: tdllr CSkC-K kknct TFSM_MOUSE : 251- 256: tdllr CSkCkK kncty S 19: 12.0102 11( 11) T-x(4)-C-x(0,1)-K Occurences: 11(11) RPO5_VACCC : 157- 163: dekyn TpcpnC-K srntt RPO5_VACCV : 157- 163: dekyn TpcpnC-K srntt RPO5_VARV : 157- 163: nekyn TpcpnC-K srntt TFS2_ASFB7 : 229- 235: ldeps TifctC-K kcghe TFS2_ASFB7 : 229- 236: ldeps TifctCkK cghef TFS2_DROME : 270- 277: vqgtk TdllkCaK ckkrn TFS2_HUMAN : 258- 265: tggtq TdlftCgK ckkkn TFS2_MOUSE : 258- 265: tggtq TdlftCgK ckkkn TFS2_SULAC : 186- 193: adepa TrfykCtK cgkvw TFS2_YEAST : 266- 273: iersv TdrftCgK ckekk TFSL_MOUSE : 192- 199: tggtq TdlftCgK ckkkn TFSM_MOUSE : 246- 253: tggtt TdllrCsK ckkkn T 20: 12.0102 12( 11) E-x(2,3)-T-x(4)-C Occurences: 12(11) RPO5_VACCC : 153- 162: fnvld EkynTpcpnC ksrnt RPO5_VACCV : 153- 162: fnvld EkynTpcpnC ksrnt RPO5_VARV : 153- 162: fnvln EkynTpcpnC ksrnt TFS2_ASFB7 : 226- 234: trald Eps-TifctC kkcgh TFS2_DROME : 295- 303: trsad Epm-TtfvmC necgn TFS2_HUMAN : 283- 291: trsad Epm-TtfvvC necgn TFS2_MOUSE : 283- 291: trsad Epm-TtfvvC necgn TFS2_SULAC : 183- 191: trsad Epa-TrfykC tkcgk TFS2_YEAST : 262- 271: qgati ErsvTdrftC gkcke TFS2_YEAST : 291- 299: trsad Epl-TtfctC eacgn TFSL_MOUSE : 217- 225: trsad Epm-TtfvvC necgn TFSM_MOUSE : 271- 279: trsad Epm-TtfvlC necgn Number of patterns evaluated by Pratt:1955 Total running time: 1 seconds