------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file TFIID PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TFIID.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TF21_ARATH 200 TF21_WHEAT 233 TF22_ARATH 200 TF22_WHEAT 201 TF2D_ACACA 258 TF2D_ACECL 191 TF2D_CAEEL 340 TF2D_DICDI 205 TF2D_DROME 353 TF2D_HUMAN 339 TF2D_MOUSE 316 TF2D_PLAFA 228 TF2D_SCHPO 231 TF2D_SOLTU 200 TF2D_XENLA 297 TF2D_YEAST 239 Pratt run started at Thu Feb 6 21:25:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 82.4010 16( 16) L-x(3)-A-x(3)-R-N-A-E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 2: 78.2310 16( 16) A-x(3)-R-N-A-E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 3: 74.0609 16( 16) R-N-A-E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 4: 69.8909 16( 16) P-I-x(2)-E-x-L-x(3)-H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 5: 69.8909 16( 16) S-x(5)-P-I-x(2)-E-x-L-x(3)-H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V 6: 69.8909 16( 16) N-A-E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 7: 65.7208 16( 16) I-x(2)-E-x-L-x(3)-H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 8: 65.7208 16( 16) A-E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 9: 61.5508 16( 16) E-x-L-x(3)-H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 10: 61.5508 16( 16) E-Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 11: 57.3807 16( 16) L-x(3)-H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 12: 57.3807 16( 16) Y-N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 13: 53.2107 16( 16) H-x(5)-Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 14: 53.2107 16( 16) N-P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 15: 49.0406 16( 16) Y-E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 16: 49.0406 16( 16) P-x(0,1)-K-x(5)-I-x(0,1)-R-x(3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 17: 48.5406 16( 16) L-x-L-x(1,3)-A-x(3)-R-N-A-E-Y-N-P-x(0,1)-K-x(5)-I 18: 44.8706 16( 16) E-P-E-x-F-x-G-L-x-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x(4)-V 19: 43.8706 16( 16) I-x(2,4)-I-R-x(1,3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G 20: 43.8706 16( 16) I-x(0,2)-I-R-x(1,3)-P-x(2)-T-A-L-I-F-x(2)-G-x(5)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 141.8278 16( 16) L-[KR]-x-[IV]-A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK] B 2: 138.3261 16( 16) R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K C 3: 135.3547 16( 16) A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S D 4: 134.1561 16( 16) N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K E 5: 134.1561 16( 16) A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A F 6: 133.2342 16( 16) E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR] G 7: 132.2890 16( 16) Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV] H 8: 131.3439 16( 16) N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV] I 9: 127.1738 16( 16) P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV] J 10: 114.4618 16( 16) S-[AC]-[DN]-[CV]-x-[FI]-P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV] K 11: 108.6217 16( 16) I-x(2,4)-I-R-x(1,3)-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV]-x(2)-[ILV]-[DGT] L 12: 108.6217 16( 16) I-x(0,2)-I-R-x(1,3)-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV]-x(2)-[ILV]-[DGT] M 13: 108.0466 16( 16) P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] N 14: 105.6537 16( 16) L-x-L-x(1,3)-A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(3)-[KR]-[DEP]-[PQ]-x-[ST]-[AT]-[AL]-[IL]-[FI]-x(2)-[GS]-x(2)-M-[LV]-[CTV]-x-[GT] O 15: 103.8766 16( 16) I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] P 16: 101.3178 1( 1) S-[AC]-[DN]-[CV]-x-[FI]-P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3)-P Q 17: 96.1396 16( 16) E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] R 18: 91.5804 16( 16) P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V S 19: 89.7653 16( 16) L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] T 20: 87.4104 16( 16) I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 141.8278 16( 16) L-[KR]-x-[IV]-A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK] Occurences: 16(16) TF21_ARATH : 40- 87: dckld LKaIALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSE dfskm TF21_WHEAT : 73- 120: dcrld LKqIALqARNAEYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSE ehskl TF22_ARATH : 40- 87: dckld LKaIALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSE hlskl TF22_WHEAT : 41- 88: dckld LKaIALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSE qqskl TF2D_ACACA : 100- 147: gckld LKnIALhARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSE easrl TF2D_ACECL : 33- 80: gctle LKeIAMqARNAEYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSE qdsrt TF2D_CAEEL : 183- 230: gvqld LKkIALhARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSE easrl TF2D_DICDI : 42- 89: ately LKaIALgARNAEYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSE dasrf TF2D_DROME : 194- 241: cckld LKkIALhARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSE ddsrl TF2D_HUMAN : 180- 227: gckld LKtIALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSE eqsrl TF2D_MOUSE : 157- 204: gckld LKtIALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSE eqsrl TF2D_PLAFA : 67- 114: cidin LRlVAVsIRNAEYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTK kdsim TF2D_SCHPO : 73- 120: dcrld LKtIALhARNAEYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSE ddskl TF2D_SOLTU : 40- 87: dckld LKaIALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSE qqskl TF2D_XENLA : 138- 185: gckld LKtIALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSE eqsrl TF2D_YEAST : 81- 128: gcrld LKtVALhARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSE ddskl B 2: 138.3261 16( 16) R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K Occurences: 16(16) TF21_ARATH : 48- 96: ialqa RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARK yariv TF21_WHEAT : 81- 129: ialqa RNAEYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARK yariv TF22_ARATH : 48- 96: ialqa RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARK yariv TF22_WHEAT : 49- 97: ialqa RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARK yarii TF2D_ACACA : 108- 156: ialha RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARK yarii TF2D_ACECL : 41- 89: iamqa RNAEYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARK yakiv TF2D_CAEEL : 191- 239: ialha RNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARK yariv TF2D_DICDI : 50- 98: ialga RNAEYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARK yarii TF2D_DROME : 202- 250: ialha RNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARK yarii TF2D_HUMAN : 188- 236: ialra RNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_MOUSE : 165- 213: ialra RNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_PLAFA : 75- 123: vavsi RNAEYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKK iakii TF2D_SCHPO : 81- 129: ialha RNAEYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRK yarii TF2D_SOLTU : 48- 96: ialqa RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARK yarii TF2D_XENLA : 146- 194: ialra RNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_YEAST : 89- 137: valha RNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRK yarii C 3: 135.3547 16( 16) A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S Occurences: 16(16) TF21_ARATH : 44- 90: dlkai ALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfS kmaar TF21_WHEAT : 77- 123: dlkqi ALqARNAEYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehS klaar TF22_ARATH : 44- 90: dlkai ALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlS klaar TF22_WHEAT : 45- 91: dlkai ALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqS klaar TF2D_ACACA : 104- 150: dlkni ALhARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaS rlaar TF2D_ACECL : 37- 83: elkei AMqARNAEYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdS rtaar TF2D_CAEEL : 187- 233: dlkki ALhARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaS rlaar TF2D_DICDI : 46- 92: ylkai ALgARNAEYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaS rfaar TF2D_DROME : 198- 244: dlkki ALhARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddS rlaar TF2D_HUMAN : 184- 230: dlkti ALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqS rlaar TF2D_MOUSE : 161- 207: dlkti ALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqS rlaar TF2D_PLAFA : 71- 117: nlrlv AVsIRNAEYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdS imgck TF2D_SCHPO : 77- 123: dlkti ALhARNAEYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddS klasr TF2D_SOLTU : 44- 90: dlkai ALqARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqS klaar TF2D_XENLA : 142- 188: dlkti ALrARNAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqS rlaar TF2D_YEAST : 85- 131: dlktv ALhARNAEYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddS klasr D 4: 134.1561 16( 16) N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K Occurences: 16(16) TF21_ARATH : 49- 96: alqar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARK yariv TF21_WHEAT : 82- 129: alqar NAEYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARK yariv TF22_ARATH : 49- 96: alqar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARK yariv TF22_WHEAT : 50- 97: alqar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARK yarii TF2D_ACACA : 109- 156: alhar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARK yarii TF2D_ACECL : 42- 89: amqar NAEYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARK yakiv TF2D_CAEEL : 192- 239: alhar NAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARK yariv TF2D_DICDI : 51- 98: algar NAEYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARK yarii TF2D_DROME : 203- 250: alhar NAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARK yarii TF2D_HUMAN : 189- 236: alrar NAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_MOUSE : 166- 213: alrar NAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_PLAFA : 76- 123: avsir NAEYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKK iakii TF2D_SCHPO : 82- 129: alhar NAEYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRK yarii TF2D_SOLTU : 49- 96: alqar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARK yarii TF2D_XENLA : 147- 194: alrar NAEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARK yarvv TF2D_YEAST : 90- 137: alhar NAEYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRK yarii E 5: 134.1561 16( 16) A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A Occurences: 16(16) TF21_ARATH : 50- 98: lqarn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARKyA rivqk TF21_WHEAT : 83- 131: lqarn AEYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARKyA rivqk TF22_ARATH : 50- 98: lqarn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARKyA rivqk TF22_WHEAT : 51- 99: lqarn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyA riiqk TF2D_ACACA : 110- 158: lharn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARKyA riiqk TF2D_ACECL : 43- 91: mqarn AEYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARKyA kivqk TF2D_CAEEL : 193- 241: lharn AEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARKyA rivqk TF2D_DICDI : 52- 100: lgarn AEYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARKyA riiqk TF2D_DROME : 204- 252: lharn AEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARKyA riiqk TF2D_HUMAN : 190- 238: lrarn AEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyA rvvqk TF2D_MOUSE : 167- 215: lrarn AEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyA rvvqk TF2D_PLAFA : 77- 125: vsirn AEYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKKiA kiiki TF2D_SCHPO : 83- 131: lharn AEYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRKyA riiqk TF2D_SOLTU : 50- 98: lqarn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyA riiqk TF2D_XENLA : 148- 196: lrarn AEYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyA rvvqk TF2D_YEAST : 91- 139: lharn AEYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRKyA riiqk F 6: 133.2342 16( 16) E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR] Occurences: 16(16) TF21_ARATH : 51- 99: qarna EYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARKyAR ivqkl TF21_WHEAT : 84- 132: qarna EYNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARKyAR ivqkl TF22_ARATH : 51- 99: qarna EYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARKyAR ivqkl TF22_WHEAT : 52- 100: qarna EYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyAR iiqkl TF2D_ACACA : 111- 159: harna EYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARKyAR iiqkl TF2D_ACECL : 44- 92: qarna EYNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARKyAK ivqkl TF2D_CAEEL : 194- 242: harna EYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARKyAR ivqkl TF2D_DICDI : 53- 101: garna EYNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARKyAR iiqkl TF2D_DROME : 205- 253: harna EYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARKyAR iiqkl TF2D_HUMAN : 191- 239: rarna EYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyAR vvqkl TF2D_MOUSE : 168- 216: rarna EYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyAR vvqkl TF2D_PLAFA : 78- 126: sirna EYNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKKiAK iikiv TF2D_SCHPO : 84- 132: harna EYNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRKyAR iiqkl TF2D_SOLTU : 51- 99: qarna EYNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyAR iiqkl TF2D_XENLA : 149- 197: rarna EYNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyAR vvqkl TF2D_YEAST : 92- 140: harna EYNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRKyAR iiqki G 7: 132.2890 16( 16) Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV] Occurences: 16(16) TF21_ARATH : 52- 100: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARKyARI vqklg TF21_WHEAT : 85- 133: arnae YNP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARKyARI vqklg TF22_ARATH : 52- 100: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARKyARI vqklg TF22_WHEAT : 53- 101: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARI iqklg TF2D_ACACA : 112- 160: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARKyARI iqklg TF2D_ACECL : 45- 93: arnae YNP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARKyAKI vqklg TF2D_CAEEL : 195- 243: arnae YNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARKyARI vqklg TF2D_DICDI : 54- 102: arnae YNP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARKyARI iqkld TF2D_DROME : 206- 254: arnae YNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARKyARI iqklg TF2D_HUMAN : 192- 240: arnae YNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARV vqklg TF2D_MOUSE : 169- 217: arnae YNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARV vqklg TF2D_PLAFA : 79- 127: irnae YNPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKKiAKI ikivt TF2D_SCHPO : 85- 133: arnae YNP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRKyARI iqklg TF2D_SOLTU : 52- 100: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARI iqklg TF2D_XENLA : 150- 198: arnae YNP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARV vqklg TF2D_YEAST : 93- 141: arnae YNP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRKyARI iqkig H 8: 131.3439 16( 16) N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV] Occurences: 16(16) TF21_ARATH : 53- 101: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARKyARIV qklgf TF21_WHEAT : 86- 134: rnaey NP-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARKyARIV qklgf TF22_ARATH : 53- 101: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARKyARIV qklgf TF22_WHEAT : 54- 102: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARII qklgf TF2D_ACACA : 113- 161: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARKyARII qklgf TF2D_ACECL : 46- 94: rnaey NP-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARKyAKIV qklgf TF2D_CAEEL : 196- 244: rnaey NP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARKyARIV qklgf TF2D_DICDI : 55- 103: rnaey NP-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARKyARII qkldf TF2D_DROME : 207- 255: rnaey NP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARKyARII qklgf TF2D_HUMAN : 193- 241: rnaey NP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_MOUSE : 170- 218: rnaey NP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_PLAFA : 80- 128: rnaey NPsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKKiAKII kivtk TF2D_SCHPO : 86- 134: rnaey NP-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRKyARII qklgf TF2D_SOLTU : 53- 101: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARII qklgf TF2D_XENLA : 151- 199: rnaey NP-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_YEAST : 94- 142: rnaey NP-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRKyARII qkigf I 9: 127.1738 16( 16) P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(0,1)-R-[IL]-[NR]-[DEK]-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV] Occurences: 16(16) TF21_ARATH : 54- 101: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEdfSkmAARKyARIV qklgf TF21_WHEAT : 87- 134: naeyn P-KrfAAVImRIRDPkTTALIFaSGKMVctGAKSEehSklAARKyARIV qklgf TF22_ARATH : 54- 101: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEhlSklAARKyARIV qklgf TF22_WHEAT : 55- 102: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARII qklgf TF2D_ACACA : 114- 161: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEeaSrlAARKyARII qklgf TF2D_ACECL : 47- 94: naeyn P-KrfAAVImRIRDPkTTALIFgSGKMVctGAKSEqdSrtAARKyAKIV qklgf TF2D_CAEEL : 197- 244: naeyn P-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeaSrlAARKyARIV qklgf TF2D_DICDI : 56- 103: naeyn P-KrfAAVImRIREPkTTALIFkSGKMVctGAKSEdaSrfAARKyARII qkldf TF2D_DROME : 208- 255: naeyn P-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEddSrlAARKyARII qklgf TF2D_HUMAN : 194- 241: naeyn P-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_MOUSE : 171- 218: naeyn P-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_PLAFA : 81- 128: naeyn PsKinTLII-RLNKPqCTALIFkNGRIMltGTRTKkdSimGCKKiAKII kivtk TF2D_SCHPO : 87- 134: naeyn P-KrfAAVImRIREPkSTALIFaSGKMVvlGGKSEddSklASRKyARII qklgf TF2D_SOLTU : 54- 101: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVctGAKSEqqSklAARKyARII qklgf TF2D_XENLA : 152- 199: naeyn P-KrfAAVImRIREPrTTALIFsSGKMVctGAKSEeqSrlAARKyARVV qklgf TF2D_YEAST : 95- 142: naeyn P-KrfAAVImRIREPkTTALIFaSGKMVvtGAKSEddSklASRKyARII qkigf J 10: 114.4618 16( 16) S-[AC]-[DN]-[CV]-x-[FI]-P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV] Occurences: 16(16) TF21_ARATH : 121- 170: qnivg SCDVkFPIrLEGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifVsGkI vitga TF21_WHEAT : 154- 203: qniva SCDVkFPIrLEGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfVsGkI vltga TF22_ARATH : 121- 170: qnivg SCDVkFPIrLEGLaySHsaFSSYEPELFPGLIYrmklPkivLlifVsGkI vitga TF22_WHEAT : 122- 171: qniva SCDVkFPIrLEGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifVsGkI vltga TF2D_ACACA : 181- 230: qnivg SCDVrFPIrLEGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifVsGkI vltga TF2D_ACECL : 114- 163: qnivg SCDVkFPIrMEPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifVsGkV vltga TF2D_CAEEL : 264- 313: qnmvg SCDVrFPIqLEGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifVsGkV vitga TF2D_DICDI : 123- 172: qnivg SCDVkFPIkLELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifVsGkI vltga TF2D_DROME : 275- 324: qnmvg SCDVkFPIrLEGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifVsGkV vltga TF2D_HUMAN : 261- 310: qnmvg SCDVkFPIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkV vltga TF2D_MOUSE : 238- 287: qnmvg SCDVkFPIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkV vltga TF2D_PLAFA : 149- 196: eniia SANCnIPIrLEVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-ViLiF vsgki TF2D_SCHPO : 154- 203: qnivg SCDVkFPIrLEGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifVsGkI vltga TF2D_SOLTU : 121- 170: qnivg SCDVkFPIrLEGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifVsGkI vitga TF2D_XENLA : 219- 268: qnmvg SCDVkFPIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkV vltga TF2D_YEAST : 162- 211: qnivg SCDVkFPIrLEGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifVsGkI vltga K 11: 108.6217 16( 16) I-x(2,4)-I-R-x(1,3)-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV]-x(2)-[ILV]-[DGT] Occurences: 16(16) TF21_ARATH : 61- 105: rfaav Imr--IRe--PkTTALIFaSGKMVctGAKSEdfSkmAARKyARIVqkLG fpakf TF21_WHEAT : 94- 138: rfaav Imr--IRd--PkTTALIFaSGKMVctGAKSEehSklAARKyARIVqkLG fpatf TF22_ARATH : 61- 105: rfaav Imr--IRe--PkTTALIFaSGKMVctGAKSEhlSklAARKyARIVqkLG fpakf TF22_WHEAT : 62- 106: rfaav Imr--IRe--PkTTALIFaSGKMVctGAKSEqqSklAARKyARIIqkLG fpakf TF2D_ACACA : 121- 165: rfaav Imr--IRe--PkTTALIFaSGKMVctGAKSEeaSrlAARKyARIIqkLG faakf TF2D_ACECL : 54- 98: rfaav Imr--IRd--PkTTALIFgSGKMVctGAKSEqdSrtAARKyAKIVqkLG fpakf TF2D_CAEEL : 204- 248: rfaav Imr--IRe--PrTTALIFsSGKMVctGAKSEeaSrlAARKyARIVqkLG fqakf TF2D_DICDI : 63- 107: rfaav Imr--IRe--PkTTALIFkSGKMVctGAKSEdaSrfAARKyARIIqkLD fparf TF2D_DROME : 215- 259: rfaav Imr--IRe--PrTTALIFsSGKMVctGAKSEddSrlAARKyARIIqkLG fpakf TF2D_HUMAN : 201- 245: rfaav Imr--IRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_MOUSE : 178- 222: rfaav Imr--IRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_PLAFA : 84- 132: ynpsk IntliIRlnkPqCTALIFkNGRIMltGTRTKkdSimGCKKiAKIIkiVT kdkvk TF2D_SCHPO : 94- 138: rfaav Imr--IRe--PkSTALIFaSGKMVvlGGKSEddSklASRKyARIIqkLG fnakf TF2D_SOLTU : 61- 105: rfaav Imr--IRe--PkTTALIFaSGKMVctGAKSEqqSklAARKyARIIqkLG fpakf TF2D_XENLA : 159- 203: rfaav Imr--IRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_YEAST : 102- 146: rfaav Imr--IRe--PkTTALIFaSGKMVvtGAKSEddSklASRKyARIIqkIG faakf L 12: 108.6217 16( 16) I-x(0,2)-I-R-x(1,3)-P-x-[CST]-T-A-L-I-F-x-[NS]-G-[KR]-[IM]-[MV]-x(2)-G-[AGT]-[KR]-[ST]-[EK]-x(2)-S-x(2)-[AG]-[ACS]-[KR]-K-x-A-[KR]-[IV]-[IV]-x(2)-[ILV]-[DGT] Occurences: 16(16) TF21_ARATH : 61- 105: rfaav ImrIRe--PkTTALIFaSGKMVctGAKSEdfSkmAARKyARIVqkLG fpakf TF21_WHEAT : 94- 138: rfaav ImrIRd--PkTTALIFaSGKMVctGAKSEehSklAARKyARIVqkLG fpatf TF22_ARATH : 61- 105: rfaav ImrIRe--PkTTALIFaSGKMVctGAKSEhlSklAARKyARIVqkLG fpakf TF22_WHEAT : 62- 106: rfaav ImrIRe--PkTTALIFaSGKMVctGAKSEqqSklAARKyARIIqkLG fpakf TF2D_ACACA : 121- 165: rfaav ImrIRe--PkTTALIFaSGKMVctGAKSEeaSrlAARKyARIIqkLG faakf TF2D_ACECL : 54- 98: rfaav ImrIRd--PkTTALIFgSGKMVctGAKSEqdSrtAARKyAKIVqkLG fpakf TF2D_CAEEL : 204- 248: rfaav ImrIRe--PrTTALIFsSGKMVctGAKSEeaSrlAARKyARIVqkLG fqakf TF2D_DICDI : 63- 107: rfaav ImrIRe--PkTTALIFkSGKMVctGAKSEdaSrfAARKyARIIqkLD fparf TF2D_DROME : 215- 259: rfaav ImrIRe--PrTTALIFsSGKMVctGAKSEddSrlAARKyARIIqkLG fpakf TF2D_HUMAN : 201- 245: rfaav ImrIRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_MOUSE : 178- 222: rfaav ImrIRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_PLAFA : 88- 132: kintl I--IRlnkPqCTALIFkNGRIMltGTRTKkdSimGCKKiAKIIkiVT kdkvk TF2D_SCHPO : 94- 138: rfaav ImrIRe--PkSTALIFaSGKMVvlGGKSEddSklASRKyARIIqkLG fnakf TF2D_SOLTU : 61- 105: rfaav ImrIRe--PkTTALIFaSGKMVctGAKSEqqSklAARKyARIIqkLG fpakf TF2D_XENLA : 159- 203: rfaav ImrIRe--PrTTALIFsSGKMVctGAKSEeqSrlAARKyARVVqkLG fpakf TF2D_YEAST : 102- 146: rfaav ImrIRe--PkTTALIFaSGKMVvtGAKSEddSklASRKyARIIqkIG faakf M 13: 108.0466 16( 16) P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] Occurences: 16(16) TF21_ARATH : 127- 175: cdvkf PIrLEGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifVsGkIViTgA kmrde TF21_WHEAT : 160- 208: cdvkf PIrLEGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfVsGkIVlTgA kvrde TF22_ARATH : 127- 175: cdvkf PIrLEGLaySHsaFSSYEPELFPGLIYrmklPkivLlifVsGkIViTgA kmree TF22_WHEAT : 128- 176: cdvkf PIrLEGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifVsGkIVlTgA kvree TF2D_ACACA : 187- 235: cdvrf PIrLEGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifVsGkIVlTgA kvree TF2D_ACECL : 120- 168: cdvkf PIrMEPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifVsGkVVlTgA kerte TF2D_CAEEL : 270- 318: cdvrf PIqLEGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifVsGkVViTgA ktkrd TF2D_DICDI : 129- 177: cdvkf PIkLELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifVsGkIVlTgA kvrey TF2D_DROME : 281- 329: cdvkf PIrLEGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifVsGkVVlTgA kvrqe TF2D_HUMAN : 267- 315: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_MOUSE : 244- 292: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_PLAFA : 155- 201: ancni PIrLEVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-ViLiFVsGkI iitgc TF2D_SCHPO : 160- 208: cdvkf PIrLEGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifVsGkIVlTgA kvree TF2D_SOLTU : 127- 175: cdvkf PIrLEGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifVsGkIViTgA kvrde TF2D_XENLA : 225- 273: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_YEAST : 168- 216: cdvkf PIrLEGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifVsGkIVlTgA kqree N 14: 105.6537 16( 16) L-x-L-x(1,3)-A-[LMV]-x-[AI]-R-N-A-E-Y-N-P-x(0,1)-K-x(2)-[AT]-[AL]-[IV]-I-x(3)-[KR]-[DEP]-[PQ]-x-[ST]-[AT]-[AL]-[IL]-[FI]-x(2)-[GS]-x(2)-M-[LV]-[CTV]-x-[GT] Occurences: 16(16) TF21_ARATH : 38- 83: nldck LdLkaiALqARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVCtG aksed TF21_WHEAT : 71- 116: nldcr LdLkqiALqARNAEYNP-KrfAAVImriRDPkTTALIfaSgkMVCtG aksee TF22_ARATH : 38- 83: nldck LdLkaiALqARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVCtG akseh TF22_WHEAT : 39- 84: nldck LdLkaiALqARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVCtG akseq TF2D_ACACA : 98- 143: nlgck LdLkniALhARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVCtG aksee TF2D_ACECL : 31- 76: nlgct LeLkeiAMqARNAEYNP-KrfAAVImriRDPkTTALIfgSgkMVCtG akseq TF2D_CAEEL : 181- 226: nlgvq LdLkkiALhARNAEYNP-KrfAAVImriREPrTTALIfsSgkMVCtG aksee TF2D_DICDI : 40- 85: nmate LyLkaiALgARNAEYNP-KrfAAVImriREPkTTALIfkSgkMVCtG aksed TF2D_DROME : 192- 237: nlcck LdLkkiALhARNAEYNP-KrfAAVImriREPrTTALIfsSgkMVCtG aksed TF2D_HUMAN : 178- 223: nlgck LdLktiALrARNAEYNP-KrfAAVImriREPrTTALIfsSgkMVCtG aksee TF2D_MOUSE : 155- 200: nlgck LdLktiALrARNAEYNP-KrfAAVImriREPrTTALIfsSgkMVCtG aksee TF2D_PLAFA : 67- 111: cidin LrLv--AVsIRNAEYNPsKinTLIIrlnKPQcTALIFknGriMLTgT rtkkd TF2D_SCHPO : 71- 116: nldcr LdLktiALhARNAEYNP-KrfAAVImriREPkSTALIfaSgkMVVlG gksed TF2D_SOLTU : 38- 83: nldck LdLkaiALqARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVCtG akseq TF2D_XENLA : 136- 181: nlgck LdLktiALrARNAEYNP-KrfAAVImriREPrTTALIfsSgkMVCtG aksee TF2D_YEAST : 79- 124: tlgcr LdLktvALhARNAEYNP-KrfAAVImriREPkTTALIfaSgkMVVtG aksed O 15: 103.8766 16( 16) I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] Occurences: 16(16) TF21_ARATH : 128- 175: dvkfp IrLEGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifVsGkIViTgA kmrde TF21_WHEAT : 161- 208: dvkfp IrLEGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfVsGkIVlTgA kvrde TF22_ARATH : 128- 175: dvkfp IrLEGLaySHsaFSSYEPELFPGLIYrmklPkivLlifVsGkIViTgA kmree TF22_WHEAT : 129- 176: dvkfp IrLEGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifVsGkIVlTgA kvree TF2D_ACACA : 188- 235: dvrfp IrLEGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifVsGkIVlTgA kvree TF2D_ACECL : 121- 168: dvkfp IrMEPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifVsGkVVlTgA kerte TF2D_CAEEL : 271- 318: dvrfp IqLEGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifVsGkVViTgA ktkrd TF2D_DICDI : 130- 177: dvkfp IkLELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifVsGkIVlTgA kvrey TF2D_DROME : 282- 329: dvkfp IrLEGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifVsGkVVlTgA kvrqe TF2D_HUMAN : 268- 315: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_MOUSE : 245- 292: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_PLAFA : 156- 201: ncnip IrLEVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-ViLiFVsGkI iitgc TF2D_SCHPO : 161- 208: dvkfp IrLEGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifVsGkIVlTgA kvree TF2D_SOLTU : 128- 175: dvkfp IrLEGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifVsGkIViTgA kvrde TF2D_XENLA : 226- 273: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_YEAST : 169- 216: dvkfp IrLEGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifVsGkIVlTgA kqree P 16: 101.3178 1( 1) S-[AC]-[DN]-[CV]-x-[FI]-P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3)-P Occurences: 1(1) TF2D_PLAFA : 149- 185: eniia SANCnIPIrLEVLahDHkeYCNYEPELFAGLVYrykP tsnlk Q 17: 96.1396 16( 16) E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] Occurences: 16(16) TF21_ARATH : 131- 175: fpirl EGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifVsGkIViTgA kmrde TF21_WHEAT : 164- 208: fpirl EGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfVsGkIVlTgA kvrde TF22_ARATH : 131- 175: fpirl EGLaySHsaFSSYEPELFPGLIYrmklPkivLlifVsGkIViTgA kmree TF22_WHEAT : 132- 176: fpirl EGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifVsGkIVlTgA kvree TF2D_ACACA : 191- 235: fpirl EGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifVsGkIVlTgA kvree TF2D_ACECL : 124- 168: fpirm EPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifVsGkVVlTgA kerte TF2D_CAEEL : 274- 318: fpiql EGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifVsGkVViTgA ktkrd TF2D_DICDI : 133- 177: fpikl ELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifVsGkIVlTgA kvrey TF2D_DROME : 285- 329: fpirl EGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifVsGkVVlTgA kvrqe TF2D_HUMAN : 271- 315: fpirl EGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_MOUSE : 248- 292: fpirl EGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_PLAFA : 159- 201: ipirl EVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-ViLiFVsGkI iitgc TF2D_SCHPO : 164- 208: fpirl EGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifVsGkIVlTgA kvree TF2D_SOLTU : 131- 175: fpirl EGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifVsGkIViTgA kvrde TF2D_XENLA : 229- 273: fpirl EGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_YEAST : 172- 216: fpirl EGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifVsGkIVlTgA kqree R 18: 91.5804 16( 16) P-I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V Occurences: 16(16) TF21_ARATH : 127- 166: cdvkf PIrLEGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifV sgkiv TF21_WHEAT : 160- 199: cdvkf PIrLEGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfV sgkiv TF22_ARATH : 127- 166: cdvkf PIrLEGLaySHsaFSSYEPELFPGLIYrmklPkivLlifV sgkiv TF22_WHEAT : 128- 167: cdvkf PIrLEGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifV sgkiv TF2D_ACACA : 187- 226: cdvrf PIrLEGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifV sgkiv TF2D_ACECL : 120- 159: cdvkf PIrMEPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifV sgkvv TF2D_CAEEL : 270- 309: cdvrf PIqLEGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifV sgkvv TF2D_DICDI : 129- 168: cdvkf PIkLELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifV sgkiv TF2D_DROME : 281- 320: cdvkf PIrLEGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifV sgkvv TF2D_HUMAN : 267- 306: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_MOUSE : 244- 283: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_PLAFA : 155- 192: ancni PIrLEVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-V ilifv TF2D_SCHPO : 160- 199: cdvkf PIrLEGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifV sgkiv TF2D_SOLTU : 127- 166: cdvkf PIrLEGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifV sgkiv TF2D_XENLA : 225- 264: cdvkf PIrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_YEAST : 168- 207: cdvkf PIrLEGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifV sgkiv S 19: 89.7653 16( 16) L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V-x-[GL]-x-[FIV]-V-x-[GT]-x-[AI] Occurences: 16(16) TF21_ARATH : 133- 175: irleg LaySHaaFSSYEPELFPGLIYrmkvPkivLlifVsGkIViTgA kmrde TF21_WHEAT : 166- 208: irleg LaySHgaFSSYEPELFPGLIYrmkqPkivLlvfVsGkIVlTgA kvrde TF22_ARATH : 133- 175: irleg LaySHsaFSSYEPELFPGLIYrmklPkivLlifVsGkIViTgA kmree TF22_WHEAT : 134- 176: irleg LaySHgaFSSYEPELFPGLIYrmrqPkivLlifVsGkIVlTgA kvree TF2D_ACACA : 193- 235: irleg LafAHnhYCSYEPELFPGLIYrmvqPkivLlifVsGkIVlTgA kvree TF2D_ACECL : 126- 168: irmep LayQHqqFCSYEPELFPGLIYrmlqPkivLlifVsGkVVlTgA kerte TF2D_CAEEL : 276- 318: iqleg LciTHsqFSTYEPELFPGLIYrmvkPrvvLlifVsGkVViTgA ktkrd TF2D_DICDI : 135- 177: iklel LhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifVsGkIVlTgA kvrey TF2D_DROME : 287- 329: irleg LvlTHcnFSSYEPELFPGLIYrmvrPrivLlifVsGkVVlTgA kvrqe TF2D_HUMAN : 273- 315: irleg LvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_MOUSE : 250- 292: irleg LvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_PLAFA : 161- 201: irlev LahDHkeYCNYEPELFAGLVYryk-PtsnLks-ViLiFVsGkI iitgc TF2D_SCHPO : 166- 208: irleg LaySHgtFSSYEPELFPGLIYrmvkPkvvLlifVsGkIVlTgA kvree TF2D_SOLTU : 133- 175: irleg LayAHgaFSSYEPELFPGLIYrmkqPkivLlifVsGkIViTgA kvrde TF2D_XENLA : 231- 273: irleg LvlTHqqFSSYEPELFPGLIYrmikPrivLlifVsGkVVlTgA kvrae TF2D_YEAST : 174- 216: irleg LafSHgtFSSYEPELFPGLIYrmvkPkivLlifVsGkIVlTgA kqree T 20: 87.4104 16( 16) I-x-[LM]-E-[GLPV]-L-x(2)-[ADQST]-H-x(2)-[FY]-[CST]-[NST]-Y-E-P-E-[IL]-F-[AP]-G-L-[IV]-Y-x(3,4)-P-x(3)-L-x(2,3)-V Occurences: 16(16) TF21_ARATH : 128- 166: dvkfp IrLEGLaySHaaFSSYEPELFPGLIYrmkvPkivLlifV sgkiv TF21_WHEAT : 161- 199: dvkfp IrLEGLaySHgaFSSYEPELFPGLIYrmkqPkivLlvfV sgkiv TF22_ARATH : 128- 166: dvkfp IrLEGLaySHsaFSSYEPELFPGLIYrmklPkivLlifV sgkiv TF22_WHEAT : 129- 167: dvkfp IrLEGLaySHgaFSSYEPELFPGLIYrmrqPkivLlifV sgkiv TF2D_ACACA : 188- 226: dvrfp IrLEGLafAHnhYCSYEPELFPGLIYrmvqPkivLlifV sgkiv TF2D_ACECL : 121- 159: dvkfp IrMEPLayQHqqFCSYEPELFPGLIYrmlqPkivLlifV sgkvv TF2D_CAEEL : 271- 309: dvrfp IqLEGLciTHsqFSTYEPELFPGLIYrmvkPrvvLlifV sgkvv TF2D_DICDI : 130- 168: dvkfp IkLELLhnAHtsFTNYEPEIFPGLIYkmiqPkvlLlifV sgkiv TF2D_DROME : 282- 320: dvkfp IrLEGLvlTHcnFSSYEPELFPGLIYrmvrPrivLlifV sgkvv TF2D_HUMAN : 268- 306: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_MOUSE : 245- 283: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_PLAFA : 156- 192: ncnip IrLEVLahDHkeYCNYEPELFAGLVYryk-PtsnLks-V ilifv TF2D_SCHPO : 161- 199: dvkfp IrLEGLaySHgtFSSYEPELFPGLIYrmvkPkvvLlifV sgkiv TF2D_SOLTU : 128- 166: dvkfp IrLEGLayAHgaFSSYEPELFPGLIYrmkqPkivLlifV sgkiv TF2D_XENLA : 226- 264: dvkfp IrLEGLvlTHqqFSSYEPELFPGLIYrmikPrivLlifV sgkvv TF2D_YEAST : 169- 207: dvkfp IrLEGLafSHgtFSSYEPELFPGLIYrmvkPkivLlifV sgkiv Number of patterns evaluated by Pratt:7070 Total running time: 5 seconds