------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file TFIIB PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TFIIB.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TF2B_DROME 315 TF2B_HALVA 114 TF2B_HUMAN 316 TF2B_KLULA 357 TF2B_PYRWO 261 TF2B_RAT 316 TF2B_XENLA 316 TF2B_YEAST 345 TF3B_CANAL 553 TF3B_KLULA 556 TF3B_YEAST 596 Pratt run started at Thu Feb 6 21:25:31 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 12( 11) F-x(3,4)-L-x-L-x(2,4)-V 2: 12.5102 12( 11) F-x(3)-L-x-L 3: 12.0102 11( 11) E-x(1,2)-T-x(2)-N 4: 12.0102 12( 11) A-x(2)-A-x(2,3)-T 5: 12.0102 12( 11) V-x(0,1)-A-x(2)-A 6: 12.0102 14( 11) A-x(0,1)-A-x-L 7: 12.0102 24( 11) A-x(2)-L-x(4,5)-K 8: 12.0102 24( 11) A-A-x(1,2)-I 9: 12.0102 21( 11) A-A-x(2,3)-I 10: 12.0102 15( 11) G-x(5)-I-x(4,5)-L 11: 12.0102 16( 11) G-x(1,2)-S-x(4)-A 12: 12.0102 11( 11) G-x(2)-P-x(3,4)-A 13: 12.0102 17( 11) L-x(3)-V-x(3,4)-A 14: 12.0102 16( 11) L-x-L-x(3,4)-V 15: 12.0102 26( 11) K-E-x(0,1)-I 16: 11.5102 14( 11) E-x(0,1)-I-x(0,1)-A 17: 11.5102 14( 11) Q-x(0,2)-E-x(5)-G 18: 11.5102 20( 11) R-x(2,3)-E-x(0,1)-I 19: 11.5102 27( 11) R-x(3,4)-E-x(0,1)-I 20: 11.5102 12( 11) V-x(1,2)-E-x(1,2)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 29.6546 11( 11) G-[KR]-[RS]-P-x(3,4)-A-[AGV]-[AV]-x(3)-[AL]-[ANST] B 2: 16.9021 11( 11) E-x(1,2)-T-[FILV]-[NRS]-N C 3: 16.5337 15( 11) R-x(2,3)-E-x(0,1)-I-x-[ADS]-[ILMV] D 4: 16.5337 18( 11) R-x(3,4)-E-x(0,1)-I-x-[ADS]-[ILMV] E 5: 16.1171 12( 11) L-[PQST]-x(2)-V-x(3,4)-A-[ADENT] F 6: 16.0950 13( 11) L-x-L-x(3,4)-V-[DEQT]-x(3)-[AENST] G 7: 16.0655 11( 11) G-x(1,2)-S-x(2)-[GSTV]-x-A-[AGSTV] H 8: 15.1802 12( 11) F-x(3,4)-L-x-L-x(2,4)-V I 9: 14.2627 11( 11) G-x(5)-I-x(4,5)-L-x(3)-[EHKR] J 10: 14.2508 11( 11) V-x(0,1)-A-[ADEN]-x-A K 11: 14.2426 11( 11) A-[ADEG]-x-A-x(2,3)-T L 12: 14.2258 14( 11) A-[ADPT]-x-L-x(4,5)-K M 13: 14.1493 12( 11) F-x(3)-L-x-L-[AGNPST] N 14: 13.7666 12( 11) V-x(1,2)-E-x(1,2)-T-[FILV] O 15: 12.0102 14( 11) A-x(0,1)-A-x-L P 16: 12.0102 24( 11) A-A-x(1,2)-I Q 17: 12.0102 21( 11) A-A-x(2,3)-I R 18: 12.0102 26( 11) K-E-x(0,1)-I S 19: 11.5102 14( 11) E-x(0,1)-I-x(0,1)-A T 20: 11.5102 14( 11) Q-x(0,2)-E-x(5)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 29.6546 11( 11) G-[KR]-[RS]-P-x(3,4)-A-[AGV]-[AV]-x(3)-[AL]-[ANST] Occurences: 11(11) TF2B_DROME : 246- 261: mdivp GRSPisvaAAAiymAS qaseh TF2B_HALVA : 62- 76: qglls GKSPtgy-AAAaiyAA sllcn TF2B_HALVA : 62- 77: qglls GKSPtgyaAAAiyaAS llcne TF2B_HUMAN : 247- 262: ldlvp GRSPisvaAAAiymAS qasae TF2B_KLULA : 277- 292: vnvla GRSPitiaAAAiymAT llfkl TF2B_PYRWO : 205- 220: rglts GKSPaglvAAAlyiAS llege TF2B_RAT : 247- 262: ldlvp GRSPisvaAAAiymAS qasae TF2B_XENLA : 247- 262: ldlvp GRSPisvaAAAiymAS qasae TF2B_YEAST : 271- 285: ikeia GKSPiti-AVVsiyLN illfq TF3B_CANAL : 225- 239: dwihe GRRPagi-AGAcvlLA armnn TF3B_KLULA : 228- 242: dwmye GRRPagi-AGAcllLA crmnn TF3B_YEAST : 217- 231: dwmfe GRRPagi-AGAcilLA crmnn B 2: 16.9021 11( 11) E-x(1,2)-T-[FILV]-[NRS]-N Occurences: 11(11) TF2B_DROME : 50- 56: idvgs EwrTFSN eksgv TF2B_HALVA : 97- 102: vaqvt Ev-TIRN ryqeq TF2B_HUMAN : 51- 57: idvgs EwrTFSN dkatk TF2B_KLULA : 66- 72: vdtrs EwrTFSN ddqng TF2B_PYRWO : 240- 245: varvt Ev-TVRN rykel TF2B_RAT : 51- 57: idvgs EwrTFSN dkatk TF2B_XENLA : 51- 57: idvgs EwrTFSN dkaaa TF2B_YEAST : 62- 68: vdtrs EwrTFSN ddhng TF3B_CANAL : 85- 90: amesr Eq-TLSN gkrki TF3B_KLULA : 88- 93: almsr Et-TLNN arrkl TF3B_YEAST : 77- 82: alesr Ea-TLNN arrkl C 3: 16.5337 15( 11) R-x(2,3)-E-x(0,1)-I-x-[ADS]-[ILMV] Occurences: 15(11) TF2B_DROME : 174- 182: qegvp RtfkE-IcAV skisk TF2B_DROME : 268- 276: asehk RsqkE-IgDI agvad TF2B_HALVA : 103- 111: vtirn Ryq-EqIeAM gih TF2B_HUMAN : 175- 183: qegvp RtfkE-IcAV srisk TF2B_HUMAN : 269- 277: asaek RtqkE-IgDI agvad TF2B_KLULA : 191- 199: raevg RsfkE-IlSL tnvrk TF2B_PYRWO : 131- 139: llkvp RtldE-IaDI arvdk TF2B_RAT : 175- 183: qegvp RtfkE-IcAV srisk TF2B_RAT : 269- 277: asaek RtqkE-IgDI agvad TF2B_XENLA : 175- 183: qegvp RtfkE-IcAV srisk TF2B_XENLA : 269- 277: asaek RtqkE-IgDI agvad TF2B_YEAST : 187- 195: raeva RtfkE-IqSL ihvkt TF3B_CANAL : 247- 255: mnnfr RshaE-IvAV shvge TF3B_KLULA : 250- 258: mnnlr RthsE-IvAI shvae TF3B_YEAST : 239- 247: mnnlr RthtE-IvAV shvae D 4: 16.5337 18( 11) R-x(3,4)-E-x(0,1)-I-x-[ADS]-[ILMV] Occurences: 18(11) TF2B_DROME : 174- 182: qegvp Rtfk-E-IcAV skisk TF2B_DROME : 268- 276: asehk Rsqk-E-IgDI agvad TF2B_HALVA : 101- 111: tevti RnryqEqIeAM gih TF2B_HUMAN : 175- 183: qegvp Rtfk-E-IcAV srisk TF2B_HUMAN : 269- 277: asaek Rtqk-E-IgDI agvad TF2B_KLULA : 191- 199: raevg Rsfk-E-IlSL tnvrk TF2B_PYRWO : 131- 139: llkvp Rtld-E-IaDI arvdk TF2B_RAT : 175- 183: qegvp Rtfk-E-IcAV srisk TF2B_RAT : 269- 277: asaek Rtqk-E-IgDI agvad TF2B_XENLA : 175- 183: qegvp Rtfk-E-IcAV srisk TF2B_XENLA : 269- 277: asaek Rtqk-E-IgDI agvad TF2B_YEAST : 187- 195: raeva Rtfk-E-IqSL ihvkt TF3B_CANAL : 246- 255: rmnnf RrshaE-IvAV shvge TF3B_CANAL : 247- 255: mnnfr Rsha-E-IvAV shvge TF3B_KLULA : 249- 258: rmnnl RrthsE-IvAI shvae TF3B_KLULA : 250- 258: mnnlr Rths-E-IvAI shvae TF3B_YEAST : 238- 247: rmnnl RrthtE-IvAV shvae TF3B_YEAST : 239- 247: mnnlr Rtht-E-IvAV shvae E 5: 16.1171 12( 11) L-[PQST]-x(2)-V-x(3,4)-A-[ADENT] Occurences: 12(11) TF2B_DROME : 223- 232: canld LPnmVqra-AT hiakk TF2B_HALVA : 39- 48: asele LSeeVqsk-AN eiidt TF2B_HUMAN : 224- 233: csnlc LPkqVqma-AT hiark TF2B_KLULA : 254- 263: cshlg LSvqVana-AE yiakh TF2B_PYRWO : 86- 95: taqlk LPrhVeee-AA rlyre TF2B_RAT : 224- 233: csnlc LPkqVqma-AT hiark TF2B_XENLA : 224- 233: csnlg LTkqVqma-AT hiark TF2B_YEAST : 248- 257: cshlg LPmqVtts-AE ytakk TF3B_CANAL : 158- 168: dfssr LQisVyslgAT flkmv TF3B_KLULA : 161- 171: dfssr LQvsVysigAT flkla TF3B_KLULA : 511- 521: vqvdg LPldVsvddAD avdvv TF3B_YEAST : 150- 160: dfssr LQvsVysigAT flkmv F 6: 16.0950 13( 11) L-x-L-x(3,4)-V-[DEQT]-x(3)-[AENST] Occurences: 13(11) TF2B_DROME : 221- 232: rfcan LdLpnm-VQraaT hiakk TF2B_HALVA : 37- 48: rfase LeLsee-VQskaN eiidt TF2B_HUMAN : 222- 233: rfcsn LcLpkq-VQmaaT hiark TF2B_KLULA : 54- 66: calcg LvLsdriVDtrsE wrtfs TF2B_PYRWO : 84- 95: ritaq LkLprh-VEeeaA rlyre TF2B_RAT : 222- 233: rfcsn LcLpkq-VQmaaT hiark TF2B_XENLA : 222- 233: rfcsn LgLtkq-VQmaaT hiark TF2B_YEAST : 50- 62: calcg LvLsdklVDtrsE wrtfs TF2B_YEAST : 246- 257: rfcsh LgLpmq-VTtsaE ytakk TF3B_CANAL : 118- 130: gewfr LaLtlnfVQgrrS nnvla TF3B_KLULA : 121- 133: fqwyr LaLsnnfVQgrkS qnvia TF3B_KLULA : 511- 522: vqvdg LpLdvs-VDdadA vdvva TF3B_YEAST : 110- 122: fqwyk LaLannfVQgrrS qnvia G 7: 16.0655 11( 11) G-x(1,2)-S-x(2)-[GSTV]-x-A-[AGSTV] Occurences: 11(11) TF2B_DROME : 246- 254: mdivp Gr-SpiSvAA aaiym TF2B_HALVA : 62- 70: qglls Gk-SptGyAA aaiya TF2B_HUMAN : 247- 255: ldlvp Gr-SpiSvAA aaiym TF2B_KLULA : 277- 285: vnvla Gr-SpiTiAA aaiym TF2B_PYRWO : 201- 210: eaykr GltSgkSpAG lvaaa TF2B_RAT : 247- 255: ldlvp Gr-SpiSvAA aaiym TF2B_XENLA : 247- 255: ldlvp Gr-SpiSvAA aaiym TF2B_YEAST : 271- 279: ikeia Gk-SpiTiAV vsiyl TF3B_CANAL : 127- 136: lnfvq GrrSnnVlAT clyva TF3B_KLULA : 130- 139: nnfvq GrkSqnViAA clyia TF3B_YEAST : 119- 128: nnfvq GrrSqnViAS clyva H 8: 15.1802 12( 11) F-x(3,4)-L-x-L-x(2,4)-V Occurences: 12(11) TF2B_DROME : 217- 227: dfmcr Fcan-LdLpnm-V qraat TF2B_HALVA : 33- 43: qyvpr Fase-LeLsee-V qskan TF2B_HUMAN : 218- 228: dfmsr Fcsn-LcLpkq-V qmaat TF2B_KLULA : 193- 202: evgrs Fkei-LsLtn--V rkkei TF2B_KLULA : 248- 258: tfipr Fcsh-LgLsvq-V anaae TF2B_PYRWO : 176- 186: dyvnk Fade-LgLsek-V rrrai TF2B_RAT : 218- 228: dfmsr Fcsn-LcLpkq-V qmaat TF2B_XENLA : 218- 228: dfmsr Fcsn-LgLtkq-V qmaat TF2B_YEAST : 242- 252: tyipr Fcsh-LgLpmq-V ttsae TF3B_CANAL : 116- 125: aagew Frla-LtLnf--V qgrrs TF3B_KLULA : 116- 128: vtdaa FqwyrLaLsnnfV qgrks TF3B_YEAST : 105- 117: itdaa FqwykLaLannfV qgrrs I 9: 14.2627 11( 11) G-x(5)-I-x(4,5)-L-x(3)-[EHKR] Occurences: 11(11) TF2B_DROME : 278- 294: igdia GvadvtIrqsykLmypH aaklf TF2B_HALVA : 67- 82: gkspt GyaaaaIyaas-LlcnE kktqr TF2B_HALVA : 67- 83: gkspt GyaaaaIyaaslLcneK ktqre TF2B_HUMAN : 279- 295: igdia GvadvtIrqsyrLiypR apdlf TF2B_KLULA : 169- 185: ervlk GksqesImasviLvgcR raevg TF2B_PYRWO : 148- 164: dkkei GrsyrfIarnlnLtpkK lfvkp TF2B_RAT : 279- 295: igdia GvadvtIrqsyrLiypR apdlf TF2B_XENLA : 279- 295: igdia GvadvtIrqsyrLiypR apdlf TF2B_YEAST : 165- 181: ektlk GksmesImaasiLigcR raeva TF3B_CANAL : 225- 241: dwihe GrrpagIagacvLlaaR mnnfr TF3B_KLULA : 228- 244: dwmye GrrpagIagaclLlacR mnnlr TF3B_YEAST : 217- 233: dwmfe GrrpagIagaciLlacR mnnlr J 10: 14.2508 11( 11) V-x(0,1)-A-[ADEN]-x-A Occurences: 11(11) TF2B_DROME : 252- 256: rspis V-AAaA iymas TF2B_HALVA : 89- 93: ktqre V-ADvA qvtev TF2B_HUMAN : 253- 257: rspis V-AAaA iymas TF2B_KLULA : 258- 262: glsvq V-ANaA eyiak TF2B_PYRWO : 232- 236: rtqre V-AEvA rvtev TF2B_RAT : 253- 257: rspis V-AAaA iymas TF2B_XENLA : 253- 257: rspis V-AAaA iymas TF2B_YEAST : 126- 131: kkdne VqAAfA kitml TF3B_CANAL : 64- 69: vqgam VgADqA ratfa TF3B_KLULA : 66- 71: iqgaf VsANqA hptfm TF3B_YEAST : 536- 541: eptkt VdAAaA iglms K 11: 14.2426 11( 11) A-[ADEG]-x-A-x(2,3)-T Occurences: 11(11) TF2B_DROME : 277- 283: eigdi AGvAdv-T irqsy TF2B_HALVA : 90- 96: tqrev ADvAqv-T evtir TF2B_HUMAN : 278- 284: eigdi AGvAdv-T irqsy TF2B_KLULA : 132- 138: dnelq AAyAki-T mmcda TF2B_PYRWO : 233- 239: tqrev AEvArv-T evtvr TF2B_RAT : 278- 284: eigdi AGvAdv-T irqsy TF2B_XENLA : 278- 284: eigdi AGvAdv-T irqsy TF2B_YEAST : 128- 134: dnevq AAfAki-T mlcda TF3B_CANAL : 66- 72: gamvg ADqAra-T faggr TF3B_KLULA : 477- 484: rlkqe ADlAsgnT slrkk TF3B_YEAST : 507- 514: rlkqe ADiAtgnT svkkk L 12: 14.2258 14( 11) A-[ADPT]-x-L-x(4,5)-K Occurences: 14(11) TF2B_DROME : 295- 304: lmyph AAkLfpedfK fttpi TF2B_HALVA : 75- 83: aaaiy AAsLlcne-K ktqre TF2B_HALVA : 75- 84: aaaiy AAsLlcnekK tqrev TF2B_HUMAN : 296- 305: liypr APdLfptdfK fdtpv TF2B_KLULA : 143- 151: tmmcd AAeLpkiv-K dcake TF2B_PYRWO : 177- 185: yvnkf ADeLglse-K vrrra TF2B_RAT : 296- 305: liypr APdLfpsdfK fdtpv TF2B_XENLA : 296- 305: liypr APdLfpadfK fdtpv TF2B_YEAST : 139- 147: tmlcd AAeLpkiv-K dcake TF3B_CANAL : 135- 144: snnvl ATcLyvacrK erthh TF3B_CANAL : 476- 485: rlkqe ADeLtgntsK sssgn TF3B_KLULA : 138- 147: sqnvi AAcLyiacrK erthh TF3B_KLULA : 170- 178: vysig ATfLklak-K lqivk TF3B_YEAST : 159- 167: vysig ATfLkmvk-K lhite TF3B_YEAST : 492- 501: wigln ADfLleqesK rlkqe M 13: 14.1493 12( 11) F-x(3)-L-x-L-[AGNPST] Occurences: 12(11) TF2B_DROME : 217- 224: dfmcr FcanLdLP nmvqr TF2B_HALVA : 33- 40: qyvpr FaseLeLS eevqs TF2B_HUMAN : 218- 225: dfmsr FcsnLcLP kqvqm TF2B_KLULA : 193- 200: evgrs FkeiLsLT nvrkk TF2B_KLULA : 248- 255: tfipr FcshLgLS vqvan TF2B_PYRWO : 176- 183: dyvnk FadeLgLS ekvrr TF2B_RAT : 218- 225: dfmsr FcsnLcLP kqvqm TF2B_XENLA : 218- 225: dfmsr FcsnLgLT kqvqm TF2B_YEAST : 242- 249: tyipr FcshLgLP mqvtt TF3B_CANAL : 116- 123: aagew FrlaLtLN fvqgr TF3B_KLULA : 196- 203: lfiqh FaekLeLG dkkik TF3B_YEAST : 185- 192: lfiqh FaekLdLA dkkik N 14: 13.7666 12( 11) V-x(1,2)-E-x(1,2)-T-[FILV] Occurences: 12(11) TF2B_DROME : 47- 54: drvid VgsEwrTF sneks TF2B_HALVA : 95- 100: advaq Vt-Ev-TI rnryq TF2B_HUMAN : 48- 55: drvid VgsEwrTF sndka TF2B_KLULA : 310- 315: sqtlq Vt-Eg-TV kggyk TF2B_PYRWO : 238- 243: aevar Vt-Ev-TV rnryk TF2B_RAT : 48- 55: drvid VgsEwrTF sndka TF2B_XENLA : 48- 55: drvid VgsEwrTF sndka TF2B_YEAST : 304- 309: gqtlq Vt-Eg-TI ksgyk TF3B_CANAL : 258- 263: vavsh Vg-Ee-TL qrrln TF3B_KLULA : 261- 266: vaish Va-Ee-TL qqrln TF3B_YEAST : 38- 43: ednpi Vs-Ev-TF getsa TF3B_YEAST : 250- 255: vavsh Va-Ee-TL qqrln O 15: 12.0102 14( 11) A-x(0,1)-A-x-L Occurences: 14(11) TF2B_DROME : 159- 163: sndak AsAcL yiacr TF2B_DROME : 295- 298: lmyph A-AkL fpedf TF2B_HALVA : 75- 78: aaaiy A-AsL lcnek TF2B_HUMAN : 160- 164: andai AsAcL yiacr TF2B_KLULA : 143- 146: tmmcd A-AeL pkivk TF2B_PYRWO : 94- 97: hveee A-ArL yreav TF2B_PYRWO : 213- 216: paglv A-AaL yiasl TF2B_RAT : 160- 164: andai AsAcL yiacr TF2B_XENLA : 160- 164: sndai AsAcL yiacr TF2B_YEAST : 139- 142: tmlcd A-AeL pkivk TF3B_CANAL : 99- 102: kikri A-AaL kipdy TF3B_KLULA : 138- 141: sqnvi A-AcL yiacr TF3B_KLULA : 235- 239: rpagi AgAcL llacr TF3B_YEAST : 267- 270: fkntk A-AkL svqkf P 16: 12.0102 24( 11) A-A-x(1,2)-I Occurences: 24(11) TF2B_DROME : 230- 234: nmvqr AAthI akkav TF2B_DROME : 253- 257: spisv AAaaI ymasq TF2B_DROME : 254- 257: pisva AAa-I ymasq TF2B_HALVA : 69- 73: sptgy AAaaI yaasl TF2B_HALVA : 70- 73: ptgya AAa-I yaasl TF2B_HUMAN : 231- 235: kqvqm AAthI arkav TF2B_HUMAN : 254- 258: spisv AAaaI ymasq TF2B_HUMAN : 255- 258: pisva AAa-I ymasq TF2B_KLULA : 261- 265: vqvan AAeyI akhsk TF2B_KLULA : 284- 288: spiti AAaaI ymatl TF2B_KLULA : 285- 288: pitia AAa-I ymatl TF2B_PYRWO : 214- 218: aglva AAlyI aslle TF2B_RAT : 231- 235: kqvqm AAthI arkav TF2B_RAT : 254- 258: spisv AAaaI ymasq TF2B_RAT : 255- 258: pisva AAa-I ymasq TF2B_XENLA : 231- 235: kqvqm AAthI arkav TF2B_XENLA : 254- 258: spisv AAaaI ymasq TF2B_XENLA : 255- 258: pisva AAa-I ymasq TF2B_YEAST : 173- 176: mesim AAs-I ligcr TF3B_CANAL : 100- 104: ikria AAlkI pdyia TF3B_CANAL : 218- 222: lahrm AAdwI hegrr TF3B_KLULA : 58- 61: easng AAv-I qgafv TF3B_YEAST : 538- 542: tktvd AAaaI glmsd TF3B_YEAST : 539- 542: ktvda AAa-I glmsd Q 17: 12.0102 21( 11) A-A-x(2,3)-I Occurences: 21(11) TF2B_DROME : 230- 234: nmvqr AAth-I akkav TF2B_DROME : 253- 257: spisv AAaa-I ymasq TF2B_HALVA : 69- 73: sptgy AAaa-I yaasl TF2B_HUMAN : 231- 235: kqvqm AAth-I arkav TF2B_HUMAN : 254- 258: spisv AAaa-I ymasq TF2B_KLULA : 132- 137: dnelq AAyakI tmmcd TF2B_KLULA : 261- 265: vqvan AAey-I akhsk TF2B_KLULA : 284- 288: spiti AAaa-I ymatl TF2B_PYRWO : 213- 218: paglv AAalyI aslle TF2B_PYRWO : 214- 218: aglva AAly-I aslle TF2B_RAT : 231- 235: kqvqm AAth-I arkav TF2B_RAT : 254- 258: spisv AAaa-I ymasq TF2B_XENLA : 231- 235: kqvqm AAth-I arkav TF2B_XENLA : 254- 258: spisv AAaa-I ymasq TF2B_YEAST : 128- 133: dnevq AAfakI tmlcd TF2B_YEAST : 173- 178: mesim AAsilI gcrra TF3B_CANAL : 99- 104: kikri AAalkI pdyia TF3B_CANAL : 100- 104: ikria AAlk-I pdyia TF3B_CANAL : 218- 222: lahrm AAdw-I hegrr TF3B_KLULA : 138- 143: sqnvi AAclyI acrke TF3B_YEAST : 538- 542: tktvd AAaa-I glmsd R 18: 12.0102 26( 11) K-E-x(0,1)-I Occurences: 26(11) TF2B_DROME : 118- 120: lisaf KE-I ssmad TF2B_DROME : 177- 179: vprtf KE-I cavsk TF2B_DROME : 188- 190: skisk KE-I grcfk TF2B_DROME : 271- 273: hkrsq KE-I gdiag TF2B_HALVA : 4- 6: veq KE-I grtyr TF2B_HUMAN : 119- 121: mmnaf KE-I ttmad TF2B_HUMAN : 178- 180: vprtf KE-I cavsr TF2B_HUMAN : 189- 191: srisk KE-I grcfk TF2B_HUMAN : 272- 274: ekrtq KE-I gdiag TF2B_KLULA : 194- 196: vgrsf KE-I lsltn TF2B_KLULA : 205- 207: tnvrk KE-I gktft TF2B_PYRWO : 145- 147: arvdk KE-I grsyr TF2B_RAT : 119- 121: mmnaf KE-I ttmad TF2B_RAT : 178- 180: vprtf KE-I cavsr TF2B_RAT : 189- 191: srisk KE-I grcfk TF2B_RAT : 272- 274: ekrtq KE-I gdiag TF2B_XENLA : 119- 121: mmnaf KE-I tnmsd TF2B_XENLA : 178- 180: vprtf KE-I cavsr TF2B_XENLA : 189- 191: srisk KE-I grcfk TF2B_XENLA : 272- 274: ekrtq KE-I gdiag TF2B_YEAST : 190- 192: vartf KE-I qslih TF2B_YEAST : 264- 266: takkc KE-I keiag TF2B_YEAST : 267- 269: kckei KE-I agksp TF3B_CANAL : 452- 455: eevai KErI wtgln TF3B_KLULA : 453- 456: easkl KErI widin TF3B_YEAST : 483- 486: easkl KErI wigln S 19: 11.5102 14( 11) E-x(0,1)-I-x(0,1)-A Occurences: 14(11) TF2B_DROME : 178- 181: prtfk E-IcA vskis TF2B_HALVA : 106- 110: rnryq EqIeA mgih TF2B_HUMAN : 179- 182: prtfk E-IcA vsris TF2B_KLULA : 173- 177: kgksq EsImA svilv TF2B_KLULA : 263- 266: vanaa EyI-A khskd TF2B_PYRWO : 135- 137: prtld E-I-A diarv TF2B_RAT : 179- 182: prtfk E-IcA vsris TF2B_XENLA : 179- 182: prtfk E-IcA vsris TF2B_YEAST : 169- 173: kgksm EsImA asili TF2B_YEAST : 268- 270: ckeik E-I-A gkspi TF3B_CANAL : 251- 254: rrsha E-IvA vshvg TF3B_KLULA : 254- 257: rrths E-IvA ishva TF3B_YEAST : 243- 246: rrtht E-IvA vshva TF3B_YEAST : 353- 357: rarvv ErIkA tngid T 20: 11.5102 14( 11) Q-x(0,2)-E-x(5)-G Occurences: 14(11) TF2B_DROME : 270- 278: ehkrs Qk-EigdiaG vadvt TF2B_HALVA : 105- 112: irnry Q--EqieamG ih TF2B_HUMAN : 144- 153: nnlfk QvyEqkslkG randa TF2B_HUMAN : 271- 279: aekrt Qk-EigdiaG vadvt TF2B_KLULA : 309- 318: isqtl QvtEgtvkgG ykaly TF2B_PYRWO : 12- 20: afdas Qr-ErrsrtG apesi TF2B_RAT : 144- 153: nnlfk QvyEqkslkG randa TF2B_RAT : 271- 279: aekrt Qk-EigdiaG vadvt TF2B_XENLA : 144- 153: nnlfk QvyEqkslkG rsnda TF2B_XENLA : 271- 279: aekrt Qk-EigdiaG vadvt TF2B_YEAST : 303- 312: vgqtl QvtEgtiksG ykily TF3B_CANAL : 474- 481: kkrlk Q--EadeltG ntsks TF3B_KLULA : 475- 482: skrlk Q--EadlasG ntslr TF3B_YEAST : 505- 512: skrlk Q--EadiatG ntsvk Number of patterns evaluated by Pratt:1888 Total running time: 2 seconds