------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file TCTP_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TCTP_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CA22_TRYBB 37 TCTP_ARATH 53 TCTP_CHICK 172 TCTP_HUMAN 172 TCTP_MEDSA 157 TCTP_MOUSE 172 TCTP_ORYSA 168 TCTP_RABIT 172 TCTP_SOLTU 168 TCTP_YEAST 167 Pratt run started at Thu Feb 6 21:24:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 18.8503 11( 10) D-x(0,2)-I-x(2)-N-x(0,2)-A-E 2: 15.6802 10( 10) I-x(2)-N-x(0,2)-A-E 3: 11.5102 11( 10) E-x(3)-D-x(2,4)-K 4: 11.5102 10( 10) N-x(0,2)-A-E 5: 11.0102 16( 10) V-x(0,1)-D-x(0,2)-I 6: 11.0102 10( 10) D-x(3,4)-D-x(3,5)-E 7: 11.0102 12( 10) V-x(2,3)-D-x(2,4)-D 8: 10.5102 15( 10) D-x(0,2)-I-x(1,3)-A 9: 10.5102 11( 10) D-x(2,4)-D-x(1,3)-Y 10: 8.3401 29( 10) G-x(3)-E 11: 8.3401 13( 10) D-E 12: 8.3401 20( 10) L-x-E 13: 8.3401 21( 10) D-x-L 14: 8.3401 13( 10) E-V 15: 8.3401 17( 10) A-E 16: 8.3401 11( 10) L-x(3)-E 17: 7.8401 17( 10) I-x(0,1)-E 18: 7.8401 12( 10) V-x(0,1)-A 19: 7.8401 15( 10) I-x(1,2)-A 20: 7.8401 17( 10) E-x(0,1)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 24.6294 11( 10) D-x(0,2)-I-[GL]-[AGT]-N-x(0,2)-A-E B 2: 21.4594 10( 10) I-[GL]-[AGT]-N-x(0,2)-A-E C 3: 21.4591 11( 10) D-x(0,2)-I-x-[AGT]-N-x(0,2)-A-E D 4: 20.5873 12( 10) D-x(0,2)-I-x(1,3)-A-[DENS]-[APV]-x(2)-[DEP]-[EGN] E 5: 19.5115 11( 10) E-x-[FLV]-x-D-x(2,4)-K-x(2)-[DE]-x-[AGLV] F 6: 18.8503 11( 10) D-x(0,2)-I-x(2)-N-x(0,2)-A-E G 7: 18.4944 11( 10) D-x-L-x-[GNS]-[ADG]-[AENS]-x(3)-[DEK] H 8: 16.8644 10( 10) V-x(0,1)-D-x(0,2)-I-x(2)-[AN]-x(2)-[AGL] I 9: 16.8457 10( 10) D-x(3,4)-D-x(3,5)-E-[AIV]-x(2)-[AG] J 10: 14.2261 13( 10) D-E-x-[FLV]-x-[AD] K 11: 13.1354 11( 10) L-x(3)-E-x(3)-[DTV]-[NPST] L 12: 11.5102 10( 10) N-x(0,2)-A-E M 13: 11.0102 12( 10) V-x(2,3)-D-x(2,4)-D N 14: 10.5102 11( 10) D-x(2,4)-D-x(1,3)-Y O 15: 8.3401 1( 1) D-I P 16: 8.3401 29( 10) G-x(3)-E Q 17: 8.3401 20( 10) L-x-E R 18: 8.3401 13( 10) E-V S 19: 8.3401 17( 10) A-E T 20: 7.8401 17( 10) I-x(0,1)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 24.6294 11( 10) D-x(0,2)-I-[GL]-[AGT]-N-x(0,2)-A-E Occurences: 11(10) CA22_TRYBB : 6- 12: mkifr D--ILTN--AE vvxdn TCTP_ARATH : 42- 52: tvgav DvnIGANpsAE e TCTP_CHICK : 45- 55: egqid DslIGGNasAE gpege TCTP_HUMAN : 45- 55: egnid DslIGGNasAE gpege TCTP_MEDSA : 34- 42: gvvev D--IGANasAE ggede TCTP_MOUSE : 45- 55: egaid DslIGGNasAE gpege TCTP_ORYSA : 42- 52: vqgai DvdIGANpsAE gggdd TCTP_ORYSA : 44- 52: gaidv D--IGANpsAE gggdd TCTP_RABIT : 45- 55: egnid DslIGGNasAE gpege TCTP_SOLTU : 42- 52: vhgav DvnIGANpsAE ggged TCTP_YEAST : 43- 51: ggdni D--IGANpsAE ggddd B 2: 21.4594 10( 10) I-[GL]-[AGT]-N-x(0,2)-A-E Occurences: 10(10) CA22_TRYBB : 7- 12: kifrd ILTN--AE vvxdn TCTP_ARATH : 45- 52: avdvn IGANpsAE e TCTP_CHICK : 48- 55: iddsl IGGNasAE gpege TCTP_HUMAN : 48- 55: iddsl IGGNasAE gpege TCTP_MEDSA : 35- 42: vvevd IGANasAE ggede TCTP_MOUSE : 48- 55: iddsl IGGNasAE gpege TCTP_ORYSA : 45- 52: aidvd IGANpsAE gggdd TCTP_RABIT : 48- 55: iddsl IGGNasAE gpege TCTP_SOLTU : 45- 52: avdvn IGANpsAE ggged TCTP_YEAST : 44- 51: gdnid IGANpsAE ggddd C 3: 21.4591 11( 10) D-x(0,2)-I-x-[AGT]-N-x(0,2)-A-E Occurences: 11(10) CA22_TRYBB : 6- 12: mkifr D--IlTN--AE vvxdn TCTP_ARATH : 42- 52: tvgav DvnIgANpsAE e TCTP_CHICK : 45- 55: egqid DslIgGNasAE gpege TCTP_HUMAN : 45- 55: egnid DslIgGNasAE gpege TCTP_MEDSA : 34- 42: gvvev D--IgANasAE ggede TCTP_MOUSE : 45- 55: egaid DslIgGNasAE gpege TCTP_ORYSA : 42- 52: vqgai DvdIgANpsAE gggdd TCTP_ORYSA : 44- 52: gaidv D--IgANpsAE gggdd TCTP_RABIT : 45- 55: egnid DslIgGNasAE gpege TCTP_SOLTU : 42- 52: vhgav DvnIgANpsAE ggged TCTP_YEAST : 43- 51: ggdni D--IgANpsAE ggddd D 4: 20.5873 12( 10) D-x(0,2)-I-x(1,3)-A-[DENS]-[APV]-x(2)-[DEP]-[EGN] Occurences: 12(10) CA22_TRYBB : 6- 17: mkifr D--IltnAEVvxDN dkpmd TCTP_ARATH : 42- 53: tvgav DvnIg--ANPsaEE TCTP_CHICK : 45- 58: egqid DslIggnASAegPE gegte TCTP_HUMAN : 45- 58: egnid DslIggnASAegPE gegte TCTP_MEDSA : 34- 43: gvvev D--Ig--ANAsaEG gedeg TCTP_MOUSE : 45- 58: egaid DslIggnASAegPE gegte TCTP_ORYSA : 42- 53: vqgai DvdIg--ANPsaEG ggdde TCTP_ORYSA : 44- 53: gaidv D--Ig--ANPsaEG ggdde TCTP_RABIT : 45- 58: egnid DslIggnASAegPE gegte TCTP_SOLTU : 42- 53: vhgav DvnIg--ANPsaEG ggede TCTP_YEAST : 40- 52: vnvgg Dn-IdigANPsaEG gdddv TCTP_YEAST : 43- 52: ggdni D--Ig--ANPsaEG gdddv E 5: 19.5115 11( 10) E-x-[FLV]-x-D-x(2,4)-K-x(2)-[DE]-x-[AGLV] Occurences: 11(10) CA22_TRYBB : 12- 24: iltna EvVxDnd--KpmDvL deivy TCTP_ARATH : 12- 26: lltgd ElLsDsfpyKeiEnG ilwev TCTP_CHICK : 12- 24: cisqd EmFsDiy--KirEvA nglcl TCTP_HUMAN : 12- 24: lishd EmFsDiy--KirEiA dglcl TCTP_MEDSA : 2- 16: d ElLsDsypyKeiEnG mlwev TCTP_MEDSA : 47- 60: egged EgVdDtav-KvvDiV dvfrl TCTP_MOUSE : 12- 24: lishd ElFsDiy--KirEiA dglcl TCTP_ORYSA : 58- 71: gggdd EgVdDqav-KvvDiV dtfrl TCTP_RABIT : 12- 24: lishd EtFsDiy--KirEiA gglcl TCTP_SOLTU : 58- 71: ggged EgVdDqav-KvvDiV dtfrl TCTP_YEAST : 12- 26: ifsnd ElLsDaydaKlvDdV iyead F 6: 18.8503 11( 10) D-x(0,2)-I-x(2)-N-x(0,2)-A-E Occurences: 11(10) CA22_TRYBB : 6- 12: mkifr D--IltN--AE vvxdn TCTP_ARATH : 42- 52: tvgav DvnIgaNpsAE e TCTP_CHICK : 45- 55: egqid DslIggNasAE gpege TCTP_HUMAN : 45- 55: egnid DslIggNasAE gpege TCTP_MEDSA : 34- 42: gvvev D--IgaNasAE ggede TCTP_MOUSE : 45- 55: egaid DslIggNasAE gpege TCTP_ORYSA : 42- 52: vqgai DvdIgaNpsAE gggdd TCTP_ORYSA : 44- 52: gaidv D--IgaNpsAE gggdd TCTP_RABIT : 45- 55: egnid DslIggNasAE gpege TCTP_SOLTU : 42- 52: vhgav DvnIgaNpsAE ggged TCTP_YEAST : 43- 51: ggdni D--IgaNpsAE ggddd G 7: 18.4944 11( 10) D-x-L-x-[GNS]-[ADG]-[AENS]-x(3)-[DEK] Occurences: 11(10) CA22_TRYBB : 6- 16: mkifr DiLtNAEvvxD ndkpm TCTP_ARATH : 6- 16: mlvyq DlLtGDEllsD sfpyk TCTP_ARATH : 11- 21: dlltg DeLlSDSfpyK eieng TCTP_CHICK : 45- 55: egqid DsLiGGNasaE gpege TCTP_HUMAN : 45- 55: egnid DsLiGGNasaE gpege TCTP_MEDSA : 1- 11: DeLlSDSypyK eieng TCTP_MOUSE : 45- 55: egaid DsLiGGNasaE gpege TCTP_ORYSA : 6- 16: mlvyq DlLtGDEllsD sfpyr TCTP_RABIT : 45- 55: egnid DsLiGGNasaE gpege TCTP_SOLTU : 6- 16: mlvyq DlLtGDEllsD sfpyt TCTP_YEAST : 11- 21: difsn DeLlSDAydaK lvddv H 8: 16.8644 10( 10) V-x(0,1)-D-x(0,2)-I-x(2)-[AN]-x(2)-[AGL] Occurences: 10(10) CA22_TRYBB : 23- 33: dkpmd VlDe-IvyAxqG ryie TCTP_ARATH : 41- 51: vtvga V-DvnIgaNpsA ee TCTP_CHICK : 70- 78: tvitg V-D--IviNhhL qetsf TCTP_HUMAN : 70- 78: tvitg V-D--IvmNhhL qetsf TCTP_MEDSA : 33- 41: kgvve V-D--IgaNasA egged TCTP_MOUSE : 70- 78: tvvtg V-D--IvmNhhL qetsf TCTP_ORYSA : 43- 51: qgaid V-D--IgaNpsA egggd TCTP_RABIT : 70- 78: tvitg V-D--IvmNhhL qetsf TCTP_SOLTU : 41- 51: vvhga V-DvnIgaNpsA eggge TCTP_YEAST : 23- 33: ydakl VdDv-IyeAdcA mvnvg TCTP_YEAST : 23- 33: ydakl V-DdvIyeAdcA mvnvg I 9: 16.8457 10( 10) D-x(3,4)-D-x(3,5)-E-[AIV]-x(2)-[AG] Occurences: 10(10) CA22_TRYBB : 18- 30: vvxdn Dkpm-Dvld--EIvyA xqgry TCTP_ARATH : 11- 26: dlltg DellsDsfpykEIenG ilwev TCTP_CHICK : 11- 26: dcisq DemfsDiykirEVanG lclev TCTP_HUMAN : 11- 26: dlish DemfsDiykirEIadG lclev TCTP_MEDSA : 1- 16: DellsDsypykEIenG mlwev TCTP_MOUSE : 11- 26: dlish DelfsDiykirEIadG lclev TCTP_ORYSA : 11- 26: dlltg DellsDsfpyrEIenG ilwev TCTP_RABIT : 11- 26: dlish DetfsDiykirEIagG lclev TCTP_SOLTU : 11- 26: dlltg DellsDsfpytEIqnG mlwev TCTP_YEAST : 19- 33: lsday DaklvDdviy-EAdcA mvnvg J 10: 14.2261 13( 10) D-E-x-[FLV]-x-[AD] Occurences: 13(10) CA22_TRYBB : 25- 30: pmdvl DEiVyA xqgry TCTP_ARATH : 11- 16: dlltg DElLsD sfpyk TCTP_CHICK : 11- 16: dcisq DEmFsD iykir TCTP_HUMAN : 11- 16: dlish DEmFsD iykir TCTP_MEDSA : 1- 6: DElLsD sypyk TCTP_MEDSA : 46- 51: aegge DEgVdD tavkv TCTP_MOUSE : 11- 16: dlish DElFsD iykir TCTP_ORYSA : 11- 16: dlltg DElLsD sfpyr TCTP_ORYSA : 57- 62: egggd DEgVdD qavkv TCTP_RABIT : 11- 16: dlish DEtFsD iykir TCTP_SOLTU : 11- 16: dlltg DElLsD sfpyt TCTP_SOLTU : 57- 62: eggge DEgVdD qavkv TCTP_YEAST : 11- 16: difsn DElLsD aydak K 11: 13.1354 11( 10) L-x(3)-E-x(3)-[DTV]-[NPST] Occurences: 11(10) CA22_TRYBB : 8- 17: ifrdi LtnaEvvxDN dkpmd TCTP_ARATH : 8- 17: vyqdl LtgdEllsDS fpyke TCTP_ARATH : 28- 37: iengi LwevEgkwVT vgavd TCTP_CHICK : 149- 158: gmval LdfrEdgvTP ymiff TCTP_HUMAN : 149- 158: gmval LdyrEdgvTP ymiff TCTP_MEDSA : 18- 27: iengm LwevEgkwVT kgvve TCTP_MOUSE : 149- 158: gmval LdyrEdgvTP fmiff TCTP_ORYSA : 8- 17: vyqdl LtgdEllsDS fpyre TCTP_RABIT : 149- 158: gmval LdyrEdgvTP fmiff TCTP_SOLTU : 8- 17: vyqdl LtgdEllsDS fpyte TCTP_YEAST : 144- 153: amvvm LnyrEdgtTP fvaiw L 12: 11.5102 10( 10) N-x(0,2)-A-E Occurences: 10(10) CA22_TRYBB : 10- 12: rdilt N--AE vvxdn TCTP_ARATH : 48- 52: vniga NpsAE e TCTP_CHICK : 51- 55: sligg NasAE gpege TCTP_HUMAN : 51- 55: sligg NasAE gpege TCTP_MEDSA : 38- 42: vdiga NasAE ggede TCTP_MOUSE : 51- 55: sligg NasAE gpege TCTP_ORYSA : 48- 52: vdiga NpsAE gggdd TCTP_RABIT : 51- 55: sligg NasAE gpege TCTP_SOLTU : 48- 52: vniga NpsAE ggged TCTP_YEAST : 47- 51: idiga NpsAE ggddd M 13: 11.0102 12( 10) V-x(2,3)-D-x(2,4)-D Occurences: 12(10) CA22_TRYBB : 14- 22: tnaev VxdnDkpm-D vldei TCTP_ARATH : 3- 11: ml Vyq-DlltgD ellsd TCTP_CHICK : 146- 154: npdgm VallDfre-D gvtpy TCTP_HUMAN : 146- 154: npdgm VallDyre-D gvtpy TCTP_MEDSA : 54- 61: vddta VkvvDiv--D vfrlq TCTP_MOUSE : 146- 154: npdgm VallDyre-D gvtpf TCTP_ORYSA : 3- 11: ml Vyq-DlltgD ellsd TCTP_ORYSA : 65- 72: vddqa VkvvDiv--D tfrlq TCTP_RABIT : 146- 154: npdgm VallDyre-D gvtpf TCTP_SOLTU : 3- 11: ml Vyq-DlltgD ellsd TCTP_SOLTU : 65- 72: vddqa VkvvDiv--D tfrlq TCTP_YEAST : 37- 43: camvn Vgg-Dni--D iganp N 14: 10.5102 11( 10) D-x(2,4)-D-x(1,3)-Y Occurences: 11(10) CA22_TRYBB : 22- 29: ndkpm Dvl--DeivY axqgr TCTP_ARATH : 11- 20: dlltg DellsDsfpY keien TCTP_CHICK : 11- 18: dcisq DemfsDi--Y kirev TCTP_HUMAN : 11- 18: dlish DemfsDi--Y kirei TCTP_MEDSA : 1- 8: DellsDs--Y pykei TCTP_MEDSA : 1- 10: DellsDsypY keien TCTP_MOUSE : 11- 18: dlish DelfsDi--Y kirei TCTP_ORYSA : 11- 20: dlltg DellsDsfpY reien TCTP_RABIT : 11- 18: dlish DetfsDi--Y kirei TCTP_SOLTU : 11- 20: dlltg DellsDsfpY teiqn TCTP_YEAST : 11- 18: difsn DellsDa--Y daklv TCTP_YEAST : 19- 28: lsday DaklvDdviY eadca O 15: 8.3401 1( 1) D-I Occurences: 1(1) CA22_TRYBB : 6- 7: mkifr DI ltnae P 16: 8.3401 29( 10) G-x(3)-E Occurences: 29(10) CA22_TRYBB : 33- 37: vyaxq GryiE TCTP_ARATH : 26- 30: keien GilwE vegkw TCTP_CHICK : 26- 30: revan GlclE vegkm TCTP_CHICK : 56- 60: nasae GpegE gteat TCTP_CHICK : 59- 63: aegpe GegtE atvit TCTP_CHICK : 166- 170: iffkd GleiE kc TCTP_HUMAN : 26- 30: reiad GlclE vegkm TCTP_HUMAN : 56- 60: nasae GpegE gtest TCTP_HUMAN : 59- 63: aegpe GegtE stvit TCTP_HUMAN : 101- 105: mksik GkleE qrper TCTP_HUMAN : 166- 170: iffkd GlemE kc TCTP_MEDSA : 16- 20: keien GmlwE vegkw TCTP_MEDSA : 43- 47: nasae GgedE gvddt TCTP_MOUSE : 26- 30: reiad GlclE vegkm TCTP_MOUSE : 56- 60: nasae GpegE gtest TCTP_MOUSE : 59- 63: aegpe GegtE stvvt TCTP_MOUSE : 101- 105: mkslk GkleE qkper TCTP_MOUSE : 166- 170: iffkd GlemE kc TCTP_ORYSA : 26- 30: reien GilwE vdgkw TCTP_ORYSA : 54- 58: psaeg GgddE gvddq TCTP_RABIT : 26- 30: reiag GlclE vegkm TCTP_RABIT : 56- 60: nasae GpegE gtest TCTP_RABIT : 59- 63: aegpe GegtE stvit TCTP_RABIT : 101- 105: mksik GkleE qrper TCTP_RABIT : 166- 170: iffkd GlemE kc TCTP_SOLTU : 26- 30: teiqn GmlwE vhgkw TCTP_SOLTU : 54- 58: psaeg GgedE gvddq TCTP_SOLTU : 104- 108: tpkle GeaqE afken TCTP_YEAST : 161- 165: aiwkh GiveE ki Q 17: 8.3401 20( 10) L-x-E Occurences: 20(10) CA22_TRYBB : 24- 26: kpmdv LdE ivyax TCTP_ARATH : 28- 30: iengi LwE vegkw TCTP_CHICK : 78- 80: vinhh LqE tsftk TCTP_CHICK : 103- 105: aikar LeE hkper TCTP_HUMAN : 78- 80: vmnhh LqE tsftk TCTP_HUMAN : 103- 105: sikgk LeE qrper TCTP_MEDSA : 18- 20: iengm LwE vegkw TCTP_MEDSA : 65- 67: vdvfr LqE qpafd TCTP_MEDSA : 152- 154: yfaya LkE ikc TCTP_MOUSE : 78- 80: vmnhh LqE tsftk TCTP_MOUSE : 103- 105: slkgk LeE qkper TCTP_ORYSA : 28- 30: iengi LwE vdgkw TCTP_ORYSA : 76- 78: vdtfr LqE qppfd TCTP_ORYSA : 163- 165: yfshg LkE vkc TCTP_RABIT : 78- 80: vmnhh LqE tsftk TCTP_RABIT : 103- 105: sikgk LeE qrper TCTP_SOLTU : 28- 30: iqngm LwE vhgkw TCTP_SOLTU : 76- 78: vdtfr LqE qpafd TCTP_SOLTU : 163- 165: ylapg LkE ikc TCTP_YEAST : 98- 100: avkak LqE tnpee R 18: 8.3401 13( 10) E-V Occurences: 13(10) CA22_TRYBB : 12- 13: iltna EV vxdnd TCTP_ARATH : 30- 31: ngilw EV egkwv TCTP_CHICK : 22- 23: iykir EV anglc TCTP_CHICK : 30- 31: nglcl EV egkmv TCTP_HUMAN : 30- 31: dglcl EV egkmv TCTP_MEDSA : 20- 21: ngmlw EV egkwv TCTP_MEDSA : 32- 33: tkgvv EV digan TCTP_MOUSE : 30- 31: dglcl EV egkmv TCTP_ORYSA : 30- 31: ngilw EV dgkwv TCTP_ORYSA : 165- 166: shglk EV kc TCTP_RABIT : 30- 31: gglcl EV egkmv TCTP_SOLTU : 30- 31: ngmlw EV hgkwv TCTP_YEAST : 105- 106: etnpe EV pkfek S 19: 8.3401 17( 10) A-E Occurences: 17(10) CA22_TRYBB : 11- 12: diltn AE vvxdn TCTP_ARATH : 51- 52: ganps AE e TCTP_CHICK : 54- 55: ggnas AE gpege TCTP_CHICK : 119- 120: fmtga AE qikhi TCTP_HUMAN : 54- 55: ggnas AE gpege TCTP_HUMAN : 119- 120: fmtga AE qikhi TCTP_MEDSA : 41- 42: ganas AE ggede TCTP_MEDSA : 93- 94: tpkld AE kqelf TCTP_MOUSE : 54- 55: ggnas AE gpege TCTP_MOUSE : 119- 120: fmtga AE qikhi TCTP_ORYSA : 51- 52: ganps AE gggdd TCTP_ORYSA : 104- 105: sakld AE kqeef TCTP_RABIT : 54- 55: ggnas AE gpege TCTP_RABIT : 119- 120: fmtga AE qikhi TCTP_SOLTU : 51- 52: ganps AE ggged TCTP_YEAST : 50- 51: ganps AE ggddd TCTP_YEAST : 61- 62: dveeg AE mvnnv T 20: 7.8401 17( 10) I-x(0,1)-E Occurences: 17(10) CA22_TRYBB : 36- 37: xqgry I-E TCTP_ARATH : 23- 24: fpyke I-E ngilw TCTP_CHICK : 20- 22: sdiyk IrE vangl TCTP_CHICK : 169- 170: kdgle I-E kc TCTP_HUMAN : 20- 22: sdiyk IrE iadgl TCTP_HUMAN : 136- 138: nyqff IgE nmnpd TCTP_MEDSA : 13- 14: ypyke I-E ngmlw TCTP_MEDSA : 103- 104: lfkkh I-E gatky TCTP_MOUSE : 20- 22: sdiyk IrE iadgl TCTP_MOUSE : 136- 138: nyqff IgE nmnpd TCTP_ORYSA : 23- 24: fpyre I-E ngilw TCTP_ORYSA : 114- 115: efkkn I-E gatky TCTP_RABIT : 20- 22: sdiyk IrE iaggl TCTP_RABIT : 136- 138: nyqfy IgE nmnpd TCTP_SOLTU : 114- 115: afken I-E satkf TCTP_YEAST : 27- 29: lvddv IyE adcam TCTP_YEAST : 162- 164: iwkhg IvE eki Number of patterns evaluated by Pratt:143 Total running time: 0 seconds