------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 27 sequences from file TCP1_3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 27 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename TCP1_3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: TCP2_MOUSE 556 TCPA_ARATH 545 TCPA_CAEEL 549 TCPA_CRIGR 556 TCPA_DROME 557 TCPA_HUMAN 556 TCPA_RAT 556 TCPA_YEAST 559 TCPB_MOUSE 535 TCPB_YEAST 527 TCPD_MOUSE 539 TCPD_YEAST 528 TCPE_AVESA 535 TCPE_MOUSE 541 TCPE_YEAST 551 TCPG_MOUSE 545 TCPG_YEAST 534 TCPH_MOUSE 544 TCPH_YEAST 550 TCPQ_MOUSE 548 TCPQ_YEAST 568 TCPZ_CAEEL 539 TCPZ_HUMAN 531 TCPZ_MOUSE 531 TCPZ_YEAST 546 TF55_SULSH 552 TF56_SULSH 560 Pratt run started at Thu Feb 6 21:24:29 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.3503 27( 27) Q-x(5)-D-G-T-x(2,3)-V 2: 16.1802 27( 27) D-G-T-x(2,3)-V 3: 12.5102 39( 27) G-D-x-T 4: 12.0102 64( 27) A-x(2)-L-x(0,1)-L 5: 12.0102 67( 27) A-x(3,4)-A-x(3)-L 6: 12.0102 74( 27) A-x(2,3)-A-x(4)-L 7: 12.0102 53( 27) A-x(0,1)-L-x-V 8: 12.0102 33( 27) G-T-x(2,3)-V 9: 12.0102 31( 27) Q-x(4,5)-G-D 10: 12.0102 48( 27) G-A-x(1,2)-I 11: 12.0102 46( 27) D-G-x(0,1)-T 12: 12.0102 47( 27) G-D-x(1,2)-T 13: 11.5102 54( 27) L-x(1,2)-D-x(1,2)-I 14: 11.5102 44( 27) A-E-x(2,4)-L 15: 11.5102 82( 27) A-x(0,1)-E-x(1,2)-L 16: 11.5102 66( 27) A-x(0,1)-A-x(0,1)-E 17: 11.5102 91( 27) A-x(0,1)-A-x(2,3)-L 18: 11.5102 80( 27) A-x(2,3)-L-x(0,1)-L 19: 11.5102 52( 27) A-x(4)-L-x(1,3)-D 20: 11.5102 83( 27) E-x(0,1)-A-x(3,4)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 34.0368 27( 27) Q-[DEK]-x(3)-[AG]-D-G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] B 2: 24.2841 27( 27) D-G-x(0,1)-T-x(2)-[ASTV]-[ILMV]-x(2)-[AGV]-[AEGS]-x-[ILM] C 3: 24.0654 27( 27) D-G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] D 4: 20.1034 29( 27) Q-x(4,5)-G-D-x(4)-[ADNTV]-x(4)-[AGQS]-x-[FILMV]-x(3)-[ACGSV] E 5: 19.8954 29( 27) G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] F 6: 19.6499 38( 27) G-D-x(1,2)-T-x(2)-[NV]-x-[GILV]-x-[AGST] G 7: 17.7906 36( 27) G-D-[GIV]-T-x(2)-[NTV] H 8: 12.0102 64( 27) A-x(2)-L-x(0,1)-L I 9: 12.0102 67( 27) A-x(3,4)-A-x(3)-L J 10: 12.0102 74( 27) A-x(2,3)-A-x(4)-L K 11: 12.0102 53( 27) A-x(0,1)-L-x-V L 12: 12.0102 48( 27) G-A-x(1,2)-I M 13: 11.5102 54( 27) L-x(1,2)-D-x(1,2)-I N 14: 11.5102 44( 27) A-E-x(2,4)-L O 15: 11.5102 82( 27) A-x(0,1)-E-x(1,2)-L P 16: 11.5102 66( 27) A-x(0,1)-A-x(0,1)-E Q 17: 11.5102 91( 27) A-x(0,1)-A-x(2,3)-L R 18: 11.5102 80( 27) A-x(2,3)-L-x(0,1)-L S 19: 11.5102 52( 27) A-x(4)-L-x(1,3)-D T 20: 11.5102 83( 27) E-x(0,1)-A-x(3,4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 34.0368 27( 27) Q-[DEK]-x(3)-[AG]-D-G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] Occurences: 27(27) TCP2_MOUSE : 82- 98: eladl QDkevGDGTts-VvIiAA ellkn TCP2_MOUSE : 82- 99: eladl QDkevGDGTtsvViIaAE llkna TCPA_ARATH : 85- 101: elael QDrevGDGTts-VvIvAA ellkr TCPA_ARATH : 85- 102: elael QDrevGDGTtsvViVaAE llkra TCPA_CAEEL : 86- 102: elaql QDeevGDGTts-VvIvAA ellkr TCPA_CAEEL : 86- 103: elaql QDeevGDGTtsvViVaAE llkra TCPA_CRIGR : 82- 98: eladl QDkevGDGTts-VvIiAA ellkn TCPA_CRIGR : 82- 99: eladl QDkevGDGTtsvViIaAE llkna TCPA_DROME : 85- 101: elaql QDeevGDGTts-VvIlAA ellkn TCPA_DROME : 85- 102: elaql QDeevGDGTtsvViLaAE llkna TCPA_HUMAN : 82- 98: eladl QDkevGDGTts-VvIiAA ellkn TCPA_HUMAN : 82- 99: eladl QDkevGDGTtsvViIaAE llkna TCPA_RAT : 82- 98: eladl QDkevGDGTts-VvIiAA ellkn TCPA_RAT : 82- 99: eladl QDkevGDGTtsvViIaAE llkna TCPA_YEAST : 90- 107: elaqq QDreiGDGTtsvViIaSE llkra TCPB_MOUSE : 91- 107: dmsrv QDdevGDGTts-VtVlAA ellre TCPB_YEAST : 84- 100: niskv QDdevGDGTts-VtVlSA ellre TCPD_MOUSE : 98- 114: elska QDieaGDGTts-VvIiAG sllds TCPD_YEAST : 85- 102: evsaa QDseaGDGTtsvViLtGA llgaa TCPE_AVESA : 94- 110: elsrs QDydiGDGTtg-VvVmAG alleq TCPE_MOUSE : 98- 114: elsks QDdeiGDGTtg-VvVlAG allee TCPE_MOUSE : 98- 115: elsks QDdeiGDGTtgvVvLaGA lleea TCPE_YEAST : 100- 117: qlsks QDdeiGDGTtgvVvLaSA lldqa TCPG_MOUSE : 87- 103: eisrt QDeevGDGTts-ViIlAG emlsv TCPG_YEAST : 85- 101: elsrt QDeevGDGTtt-ViIlAG eilaq TCPH_MOUSE : 86- 102: diaks QDaevGDGTts-VtLlAA eflkq TCPH_YEAST : 90- 106: disra QDaevGDGTts-VtIlAG elmke TCPQ_MOUSE : 93- 109: mashm QEqevGDGTnf-VlVfAG allel TCPQ_YEAST : 92- 108: mateq QKidmGDGTnl-VmIlAG ellnv TCPZ_CAEEL : 84- 101: kasta QDdvtGDGTtstVlLiGE llkqa TCPZ_HUMAN : 84- 101: kvata QDditGDGTtsnVlIiGE llkqa TCPZ_MOUSE : 84- 101: kvata QDditGDGTtsnVlIiGE llkqa TCPZ_YEAST : 83- 100: raaaa QDeitGDGTttvVcLvGE llrqa TF55_SULSH : 95- 112: qiakg QDeetADGTktaViLaGE lakka TF56_SULSH : 85- 102: eaaka QDaevGDGTtsaVvLaGA lleka B 2: 24.2841 27( 27) D-G-x(0,1)-T-x(2)-[ASTV]-[ILMV]-x(2)-[AGV]-[AEGS]-x-[ILM] Occurences: 27(27) TCP2_MOUSE : 88- 100: dkevg DG-TtsVViiAAeL lknad TCP2_MOUSE : 88- 101: dkevg DGtTsvVIiaAElL knade TCPA_ARATH : 91- 103: drevg DG-TtsVVivAAeL lkran TCPA_ARATH : 91- 104: drevg DGtTsvVIvaAElL krand TCPA_CAEEL : 92- 104: deevg DG-TtsVVivAAeL lkrad TCPA_CAEEL : 92- 105: deevg DGtTsvVIvaAElL krade TCPA_CRIGR : 88- 100: dkevg DG-TtsVViiAAeL lknad TCPA_CRIGR : 88- 101: dkevg DGtTsvVIiaAElL knade TCPA_DROME : 91- 103: deevg DG-TtsVVilAAeL lknad TCPA_DROME : 91- 104: deevg DGtTsvVIlaAElL knade TCPA_HUMAN : 88- 100: dkevg DG-TtsVViiAAeL lknad TCPA_HUMAN : 88- 101: dkevg DGtTsvVIiaAElL knade TCPA_RAT : 88- 100: dkevg DG-TtsVViiAAeL lknad TCPA_RAT : 88- 101: dkevg DGtTsvVIiaAElL knade TCPA_YEAST : 96- 108: dreig DG-TtsVViiASeL lkran TCPB_MOUSE : 97- 110: ddevg DGtTsvTVlaAElL reaes TCPB_YEAST : 90- 103: ddevg DGtTsvTVlsAElL reaek TCPD_MOUSE : 104- 116: dieag DG-TtsVViiAGsL ldsct TCPD_MOUSE : 104- 117: dieag DGtTsvVIiaGSlL dsctk TCPD_YEAST : 91- 104: dseag DGtTsvVIltGAlL gaaer TCPE_AVESA : 100- 112: dydig DG-TtgVVvmAGaL leqae TCPE_AVESA : 100- 113: dydig DGtTgvVVmaGAlL eqaek TCPE_MOUSE : 104- 116: ddeig DG-TtgVVvlAGaL leeae TCPE_MOUSE : 104- 117: ddeig DGtTgvVVlaGAlL eeaeq TCPE_YEAST : 106- 118: ddeig DG-TtgVVvlASaL ldqal TCPG_MOUSE : 93- 105: deevg DG-TtsVIilAGeM lsvae TCPG_YEAST : 91- 103: deevg DG-TttVIilAGeI laqca TCPH_MOUSE : 92- 105: daevg DGtTsvTLlaAEfL kqvkp TCPH_YEAST : 96- 109: daevg DGtTsvTIlaGElM keakp TCPQ_MOUSE : 99- 111: eqevg DG-TnfVLvfAGaL lelae TCPQ_YEAST : 98- 110: kidmg DG-TnlVMilAGeL lnvse TCPZ_CAEEL : 90- 103: ddvtg DGtTstVLliGElL kqaes TCPZ_HUMAN : 90- 103: dditg DGtTsnVLiiGElL kqadl TCPZ_MOUSE : 90- 103: dditg DGtTsnVLiiGElL kqadl TCPZ_YEAST : 89- 101: deitg DG-TttVVclVGeL lrqah TF55_SULSH : 101- 113: deeta DG-TktAVilAGeL akkae TF56_SULSH : 91- 103: daevg DG-TtsAVvlAGaL lekae TF56_SULSH : 91- 104: daevg DGtTsaVVlaGAlL ekaes C 3: 24.0654 27( 27) D-G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] Occurences: 27(27) TCP2_MOUSE : 88- 98: dkevg DGTts-VvIiAA ellkn TCP2_MOUSE : 88- 99: dkevg DGTtsvViIaAE llkna TCPA_ARATH : 91- 101: drevg DGTts-VvIvAA ellkr TCPA_ARATH : 91- 102: drevg DGTtsvViVaAE llkra TCPA_CAEEL : 92- 102: deevg DGTts-VvIvAA ellkr TCPA_CAEEL : 92- 103: deevg DGTtsvViVaAE llkra TCPA_CRIGR : 88- 98: dkevg DGTts-VvIiAA ellkn TCPA_CRIGR : 88- 99: dkevg DGTtsvViIaAE llkna TCPA_DROME : 91- 101: deevg DGTts-VvIlAA ellkn TCPA_DROME : 91- 102: deevg DGTtsvViLaAE llkna TCPA_HUMAN : 88- 98: dkevg DGTts-VvIiAA ellkn TCPA_HUMAN : 88- 99: dkevg DGTtsvViIaAE llkna TCPA_RAT : 88- 98: dkevg DGTts-VvIiAA ellkn TCPA_RAT : 88- 99: dkevg DGTtsvViIaAE llkna TCPA_YEAST : 96- 107: dreig DGTtsvViIaSE llkra TCPB_MOUSE : 97- 107: ddevg DGTts-VtVlAA ellre TCPB_YEAST : 90- 100: ddevg DGTts-VtVlSA ellre TCPD_MOUSE : 104- 114: dieag DGTts-VvIiAG sllds TCPD_YEAST : 91- 102: dseag DGTtsvViLtGA llgaa TCPE_AVESA : 100- 110: dydig DGTtg-VvVmAG alleq TCPE_MOUSE : 104- 114: ddeig DGTtg-VvVlAG allee TCPE_MOUSE : 104- 115: ddeig DGTtgvVvLaGA lleea TCPE_YEAST : 106- 117: ddeig DGTtgvVvLaSA lldqa TCPG_MOUSE : 93- 103: deevg DGTts-ViIlAG emlsv TCPG_YEAST : 91- 101: deevg DGTtt-ViIlAG eilaq TCPH_MOUSE : 92- 102: daevg DGTts-VtLlAA eflkq TCPH_YEAST : 96- 106: daevg DGTts-VtIlAG elmke TCPQ_MOUSE : 99- 109: eqevg DGTnf-VlVfAG allel TCPQ_YEAST : 98- 108: kidmg DGTnl-VmIlAG ellnv TCPZ_CAEEL : 90- 101: ddvtg DGTtstVlLiGE llkqa TCPZ_HUMAN : 90- 101: dditg DGTtsnVlIiGE llkqa TCPZ_MOUSE : 90- 101: dditg DGTtsnVlIiGE llkqa TCPZ_YEAST : 89- 100: deitg DGTttvVcLvGE llrqa TF55_SULSH : 101- 112: deeta DGTktaViLaGE lakka TF56_SULSH : 91- 102: daevg DGTtsaVvLaGA lleka D 4: 20.1034 29( 27) Q-x(4,5)-G-D-x(4)-[ADNTV]-x(4)-[AGQS]-x-[FILMV]-x(3)-[ACGSV] Occurences: 29(27) TCP2_MOUSE : 82- 104: eladl Qdkev-GDgttsVviiaAeLlknA delvk TCPA_ARATH : 85- 107: elael Qdrev-GDgttsVvivaAeLlkrA ndlvr TCPA_CAEEL : 86- 108: elaql Qdeev-GDgttsVvivaAeLlkrA delvk TCPA_CRIGR : 82- 104: eladl Qdkev-GDgttsVviiaAeLlknA delvk TCPA_DROME : 85- 107: elaql Qdeev-GDgttsVvilaAeLlknA delvk TCPA_HUMAN : 82- 104: eladl Qdkev-GDgttsVviiaAeLlknA delvk TCPA_RAT : 82- 104: eladl Qdkev-GDgttsVviiaAeLlknA delvk TCPA_YEAST : 89- 112: velaq QqdreiGDgttsVviiaSeLlkrA nelvk TCPA_YEAST : 90- 112: elaqq Qdrei-GDgttsVviiaSeLlkrA nelvk TCPB_MOUSE : 91- 113: dmsrv Qddev-GDgttsVtvlaAeLlreA eslia TCPB_YEAST : 84- 106: niskv Qddev-GDgttsVtvlsAeLlreA eklid TCPD_MOUSE : 98- 120: elska Qdiea-GDgttsVviiaGsLldsC tkllq TCPD_YEAST : 85- 107: evsaa Qdsea-GDgttsVviltGaLlgaA erlln TCPE_AVESA : 94- 116: elsrs Qdydi-GDgttgVvvmaGaLleqA eklle TCPE_MOUSE : 98- 120: elsks Qddei-GDgttgVvvlaGaLleeA eqlld TCPE_YEAST : 100- 122: qlsks Qddei-GDgttgVvvlaSaLldqA leliq TCPG_MOUSE : 87- 109: eisrt Qdeev-GDgttsViilaGeMlsvA ehfle TCPG_YEAST : 85- 107: elsrt Qdeev-GDgtttViilaGeIlaqC apyli TCPH_MOUSE : 86- 108: diaks Qdaev-GDgttsVtllaAeFlkqV kpyve TCPH_YEAST : 90- 112: disra Qdaev-GDgttsVtilaGeLmkeA kpfle TCPQ_MOUSE : 93- 115: mashm Qeqev-GDgtnfVlvfaGaLlelA eellr TCPQ_YEAST : 91- 114: vmate QqkidmGDgtnlVmilaGeLlnvS eklis TCPQ_YEAST : 92- 114: mateq Qkidm-GDgtnlVmilaGeLlnvS eklis TCPZ_CAEEL : 84- 106: kasta Qddvt-GDgttsTvlliGeLlkqA eslvl TCPZ_HUMAN : 84- 106: kvata Qddit-GDgttsNvliiGeLlkqA dlyis TCPZ_MOUSE : 84- 106: kvata Qddit-GDgttsNvliiGeLlkqA dlyis TCPZ_YEAST : 83- 105: raaaa Qdeit-GDgtttVvclvGeLlrqA hrfiq TF55_SULSH : 190- 213: vkava QvaelrGDkwyvDldnvQiVkkhG gsind TF56_SULSH : 85- 107: eaaka Qdaev-GDgttsAvvlaGaLlekA eslld E 5: 19.8954 29( 27) G-T-x(2,3)-V-x-[ILV]-x-[AGS]-[AEG] Occurences: 29(27) TCP2_MOUSE : 89- 98: kevgd GTts-VvIiAA ellkn TCP2_MOUSE : 89- 99: kevgd GTtsvViIaAE llkna TCPA_ARATH : 92- 101: revgd GTts-VvIvAA ellkr TCPA_ARATH : 92- 102: revgd GTtsvViVaAE llkra TCPA_CAEEL : 93- 102: eevgd GTts-VvIvAA ellkr TCPA_CAEEL : 93- 103: eevgd GTtsvViVaAE llkra TCPA_CRIGR : 89- 98: kevgd GTts-VvIiAA ellkn TCPA_CRIGR : 89- 99: kevgd GTtsvViIaAE llkna TCPA_DROME : 92- 101: eevgd GTts-VvIlAA ellkn TCPA_DROME : 92- 102: eevgd GTtsvViLaAE llkna TCPA_DROME : 283- 293: inmil GTgvnVvLvSG gvddl TCPA_HUMAN : 89- 98: kevgd GTts-VvIiAA ellkn TCPA_HUMAN : 89- 99: kevgd GTtsvViIaAE llkna TCPA_RAT : 89- 98: kevgd GTts-VvIiAA ellkn TCPA_RAT : 89- 99: kevgd GTtsvViIaAE llkna TCPA_YEAST : 97- 107: reigd GTtsvViIaSE llkra TCPB_MOUSE : 98- 107: devgd GTts-VtVlAA ellre TCPB_YEAST : 91- 100: devgd GTts-VtVlSA ellre TCPD_MOUSE : 105- 114: ieagd GTts-VvIiAG sllds TCPD_YEAST : 92- 102: seagd GTtsvViLtGA llgaa TCPE_AVESA : 101- 110: ydigd GTtg-VvVmAG alleq TCPE_MOUSE : 105- 114: deigd GTtg-VvVlAG allee TCPE_MOUSE : 105- 115: deigd GTtgvVvLaGA lleea TCPE_YEAST : 107- 117: deigd GTtgvVvLaSA lldqa TCPG_MOUSE : 94- 103: eevgd GTts-ViIlAG emlsv TCPG_YEAST : 92- 101: eevgd GTtt-ViIlAG eilaq TCPH_MOUSE : 93- 102: aevgd GTts-VtLlAA eflkq TCPH_YEAST : 97- 106: aevgd GTts-VtIlAG elmke TCPQ_MOUSE : 100- 109: qevgd GTnf-VlVfAG allel TCPQ_MOUSE : 285- 295: vkaia GTganViVtGG kvadi TCPQ_YEAST : 99- 108: idmgd GTnl-VmIlAG ellnv TCPZ_CAEEL : 91- 101: dvtgd GTtstVlLiGE llkqa TCPZ_HUMAN : 91- 101: ditgd GTtsnVlIiGE llkqa TCPZ_MOUSE : 91- 101: ditgd GTtsnVlIiGE llkqa TCPZ_YEAST : 90- 100: eitgd GTttvVcLvGE llrqa TF55_SULSH : 102- 112: eetad GTktaViLaGE lakka TF56_SULSH : 92- 102: aevgd GTtsaVvLaGA lleka F 6: 19.6499 38( 27) G-D-x(1,2)-T-x(2)-[NV]-x-[GILV]-x-[AGST] Occurences: 38(27) TCP2_MOUSE : 50- 60: lvddi GDv-TitNdGaT ilkll TCP2_MOUSE : 87- 97: qdkev GDg-TtsVvIiA aellk TCP2_MOUSE : 87- 98: qdkev GDgtTsvViIaA ellkn TCPA_ARATH : 53- 63: lvddi GDv-TitNdGaT ilrml TCPA_ARATH : 90- 100: qdrev GDg-TtsVvIvA aellk TCPA_ARATH : 90- 101: qdrev GDgtTsvViVaA ellkr TCPA_CAEEL : 91- 101: qdeev GDg-TtsVvIvA aellk TCPA_CAEEL : 91- 102: qdeev GDgtTsvViVaA ellkr TCPA_CRIGR : 50- 60: lvddi GDv-TitNdGaT ilkll TCPA_CRIGR : 87- 97: qdkev GDg-TtsVvIiA aellk TCPA_CRIGR : 87- 98: qdkev GDgtTsvViIaA ellkn TCPA_DROME : 53- 63: lvddi GDv-TvtNdGaT ilrll TCPA_DROME : 90- 100: qdeev GDg-TtsVvIlA aellk TCPA_DROME : 90- 101: qdeev GDgtTsvViLaA ellkn TCPA_HUMAN : 50- 60: lvddi GDv-TitNdGaT ilkll TCPA_HUMAN : 87- 97: qdkev GDg-TtsVvIiA aellk TCPA_HUMAN : 87- 98: qdkev GDgtTsvViIaA ellkn TCPA_RAT : 50- 60: lvddi GDv-TitNdGaT ilkll TCPA_RAT : 87- 97: qdkev GDg-TtsVvIiA aellk TCPA_RAT : 87- 98: qdkev GDgtTsvViIaA ellkn TCPA_YEAST : 58- 68: lvddi GDf-TvtNdGaT ilsll TCPA_YEAST : 95- 105: qdrei GDg-TtsVvIiA sellk TCPA_YEAST : 95- 106: qdrei GDgtTsvViIaS ellkr TCPB_MOUSE : 96- 106: qddev GDg-TtsVtVlA aellr TCPB_YEAST : 89- 99: qddev GDg-TtsVtVlS aellr TCPD_MOUSE : 66- 76: iqdgk GDv-TitNdGaT ilkqm TCPD_MOUSE : 103- 113: qdiea GDg-TtsVvIiA gslld TCPD_MOUSE : 103- 114: qdiea GDgtTsvViIaG sllds TCPD_YEAST : 90- 100: qdsea GDg-TtsVvIlT gallg TCPD_YEAST : 90- 101: qdsea GDgtTsvViLtG allga TCPE_AVESA : 62- 72: lqspd GDv-TitNdGaT ilelm TCPE_AVESA : 99- 109: qdydi GDg-TtgVvVmA galle TCPE_MOUSE : 66- 76: mvdkd GDv-TitNdGaT ilsmm TCPE_MOUSE : 103- 113: qddei GDg-TtgVvVlA galle TCPE_MOUSE : 103- 114: qddei GDgtTgvVvLaG allee TCPE_YEAST : 105- 115: qddei GDg-TtgVvVlA salld TCPE_YEAST : 105- 116: qddei GDgtTgvVvLaS alldq TCPG_MOUSE : 92- 102: qdeev GDg-TtsViIlA gemls TCPG_YEAST : 90- 100: qdeev GDg-TttViIlA geila TCPH_MOUSE : 91- 101: qdaev GDg-TtsVtLlA aeflk TCPH_YEAST : 95- 105: qdaev GDg-TtsVtIlA gelmk TCPQ_MOUSE : 98- 108: qeqev GDg-TnfVlVfA galle TCPQ_YEAST : 97- 107: qkidm GDg-TnlVmIlA gelln TCPZ_CAEEL : 89- 100: qddvt GDgtTstVlLiG ellkq TCPZ_HUMAN : 89- 100: qddit GDgtTsnVlIiG ellkq TCPZ_MOUSE : 89- 100: qddit GDgtTsnVlIiG ellkq TCPZ_YEAST : 88- 99: qdeit GDgtTtvVcLvG ellrq TF55_SULSH : 63- 73: fvdsl GDi-TitNdGaT ildkm TF56_SULSH : 53- 63: lidsf GDv-TitNdGaT ivkdm TF56_SULSH : 90- 101: qdaev GDgtTsaVvLaG allek G 7: 17.7906 36( 27) G-D-[GIV]-T-x(2)-[NTV] Occurences: 36(27) TCP2_MOUSE : 50- 56: lvddi GDVTitN dgati TCP2_MOUSE : 87- 93: qdkev GDGTtsV viiaa TCPA_ARATH : 53- 59: lvddi GDVTitN dgati TCPA_ARATH : 90- 96: qdrev GDGTtsV vivaa TCPA_CAEEL : 91- 97: qdeev GDGTtsV vivaa TCPA_CRIGR : 50- 56: lvddi GDVTitN dgati TCPA_CRIGR : 87- 93: qdkev GDGTtsV viiaa TCPA_DROME : 53- 59: lvddi GDVTvtN dgati TCPA_DROME : 90- 96: qdeev GDGTtsV vilaa TCPA_HUMAN : 50- 56: lvddi GDVTitN dgati TCPA_HUMAN : 87- 93: qdkev GDGTtsV viiaa TCPA_RAT : 50- 56: lvddi GDVTitN dgati TCPA_RAT : 87- 93: qdkev GDGTtsV viiaa TCPA_YEAST : 95- 101: qdrei GDGTtsV viias TCPB_MOUSE : 96- 102: qddev GDGTtsV tvlaa TCPB_YEAST : 89- 95: qddev GDGTtsV tvlsa TCPD_MOUSE : 66- 72: iqdgk GDVTitN dgati TCPD_MOUSE : 103- 109: qdiea GDGTtsV viiag TCPD_YEAST : 90- 96: qdsea GDGTtsV viltg TCPE_AVESA : 62- 68: lqspd GDVTitN dgati TCPE_AVESA : 99- 105: qdydi GDGTtgV vvmag TCPE_MOUSE : 66- 72: mvdkd GDVTitN dgati TCPE_MOUSE : 103- 109: qddei GDGTtgV vvlag TCPE_YEAST : 105- 111: qddei GDGTtgV vvlas TCPG_MOUSE : 92- 98: qdeev GDGTtsV iilag TCPG_YEAST : 90- 96: qdeev GDGTttV iilag TCPH_MOUSE : 91- 97: qdaev GDGTtsV tllaa TCPH_YEAST : 95- 101: qdaev GDGTtsV tilag TCPQ_MOUSE : 98- 104: qeqev GDGTnfV lvfag TCPQ_YEAST : 97- 103: qkidm GDGTnlV milag TCPZ_CAEEL : 89- 95: qddvt GDGTtsT vllig TCPZ_HUMAN : 89- 95: qddit GDGTtsN vliig TCPZ_MOUSE : 89- 95: qddit GDGTtsN vliig TCPZ_YEAST : 88- 94: qdeit GDGTttV vclvg TF55_SULSH : 63- 69: fvdsl GDITitN dgati TF56_SULSH : 53- 59: lidsf GDVTitN dgati H 8: 12.0102 64( 27) A-x(2)-L-x(0,1)-L Occurences: 64(27) TCP2_MOUSE : 59- 64: itndg AtiLkL leveh TCP2_MOUSE : 97- 101: svvii AaeL-L knade TCP2_MOUSE : 442- 446: aiaef ArsL-L vipnt TCPA_ARATH : 100- 104: svviv AaeL-L krand TCPA_ARATH : 375- 380: tktss AvsLiL rgand TCPA_ARATH : 445- 449: aiaef AdaL-L iipkv TCPA_CAEEL : 101- 105: svviv AaeL-L krade TCPA_CAEEL : 445- 449: avaef AsaL-L iipkv TCPA_CRIGR : 59- 64: itndg AtiLkL leveh TCPA_CRIGR : 97- 101: svvii AaeL-L knade TCPA_CRIGR : 442- 446: aiaef ArsL-L vipnt TCPA_DROME : 62- 67: vtndg AtiLrL leveh TCPA_DROME : 100- 104: svvil AaeL-L knade TCPA_DROME : 445- 449: aiaef AksL-L vipkt TCPA_HUMAN : 59- 64: itndg AtiLkL leveh TCPA_HUMAN : 97- 101: svvii AaeL-L knade TCPA_HUMAN : 442- 446: aiaef ArsL-L vipnt TCPA_RAT : 59- 64: itndg AtiLkL leveh TCPA_RAT : 97- 101: svvii AaeL-L knade TCPA_RAT : 442- 446: aiaef ArsL-L vipnt TCPA_YEAST : 67- 72: vtndg AtiLsL ldvqh TCPA_YEAST : 105- 109: svvii AseL-L krane TCPA_YEAST : 452- 456: aiaef AaaL-L iipkt TCPB_MOUSE : 106- 110: svtvl AaeL-L reaes TCPB_YEAST : 505- 509: sasea AevL-L rvdni TCPD_MOUSE : 113- 117: svvii AgsL-L dsctk TCPD_MOUSE : 281- 286: lreer AyiLnL vkqik TCPD_YEAST : 107- 111: allga AerL-L nkgih TCPE_AVESA : 71- 76: itndg AtiLeL mdvdn TCPE_AVESA : 109- 113: gvvvm AgaL-L eqaek TCPE_AVESA : 116- 120: alleq AekL-L ergih TCPE_AVESA : 306- 310: gfdde AnhL-L mqrel TCPE_AVESA : 453- 458: adald AipLaL aensg TCPE_MOUSE : 113- 117: gvvvl AgaL-L eeaeq TCPE_MOUSE : 120- 124: allee AeqL-L drgih TCPE_MOUSE : 310- 314: gfdde AnhL-L lqngl TCPE_MOUSE : 310- 315: gfdde AnhLlL qnglp TCPE_YEAST : 115- 119: gvvvl AsaL-L dqale TCPE_YEAST : 320- 324: gfdde AnhL-L lqndl TCPE_YEAST : 320- 325: gfdde AnhLlL qndlp TCPG_MOUSE : 513- 517: tavet AvlL-L riddi TCPG_YEAST : 517- 521: taies AclL-L rvddi TCPH_MOUSE : 63- 68: isndg AtiLkL ldvvh TCPH_YEAST : 67- 72: isndg AtiLkL ldvvh TCPH_YEAST : 513- 518: nsate AtnLiL svdet TCPQ_MOUSE : 108- 112: fvlvf AgaL-L elaee TCPQ_MOUSE : 115- 119: allel AeeL-L rigls TCPQ_YEAST : 107- 111: lvmil AgeL-L nvsek TCPZ_CAEEL : 17- 22: elarh AaaLeL nisga TCPZ_CAEEL : 106- 111: ellkq AesLvL eglhp TCPZ_CAEEL : 445- 449: gaeaf AqaL-L vipkt TCPZ_CAEEL : 482- 487: agpdi AvgLdL etgga TCPZ_CAEEL : 516- 520: satvl AcnL-L lvdev TCPZ_CAEEL : 516- 521: satvl AcnLlL vdevm TCPZ_HUMAN : 441- 445: gvqaf AdaL-L iipkv TCPZ_MOUSE : 441- 445: gvqaf AdaL-L iipkv TCPZ_YEAST : 186- 191: vydaq AdnLdL hmvei TCPZ_YEAST : 231- 236: trvkn AyvLiL nvsle TCPZ_YEAST : 448- 452: gieaf AeaL-L vipkt TCPZ_YEAST : 524- 528: gatgi AsnL-L lcdel TCPZ_YEAST : 524- 529: gatgi AsnLlL cdell TF55_SULSH : 117- 121: elakk AedL-L ykeih TF55_SULSH : 518- 523: kaate AvtLvL riddi TF56_SULSH : 74- 78: eiqhp AakL-L veaak TF56_SULSH : 100- 104: savvl AgaL-L ekaes TF56_SULSH : 107- 111: allek AesL-L dqnih TF56_SULSH : 131- 135: kaytk AleL-L pqlgt TF56_SULSH : 418- 423: lpggg AieLeL amklr I 9: 12.0102 67( 27) A-x(3,4)-A-x(3)-L Occurences: 67(27) TCP2_MOUSE : 369- 377: ikntk Arts-AsiiL rgand TCP2_MOUSE : 437- 446: sreql AiaefArslL vipnt TCP2_MOUSE : 517- 525: kslkf Atea-AitiL riddl TCPA_ARATH : 440- 449: sreql AiaefAdalL iipkv TCPA_ARATH : 520- 528: kiiqf Atea-AitiL riddm TCPA_CAEEL : 440- 449: sreql AvaefAsalL iipkv TCPA_CAEEL : 520- 528: kslkf Atea-AitiL riddl TCPA_CRIGR : 369- 377: ikntk Arts-AsiiL rgand TCPA_CRIGR : 437- 446: sreql AiaefArslL vipnt TCPA_CRIGR : 517- 525: kslkf Atea-AitiL riddl TCPA_DROME : 372- 380: ikgtk Araa-AsiiL rgpnd TCPA_DROME : 440- 449: sreql AiaefAkslL vipkt TCPA_DROME : 520- 528: kslkf Atea-AitiL riddm TCPA_DROME : 547- 555: sgksy Adac-AageL dg TCPA_HUMAN : 369- 377: ikntk Arts-AsiiL rgand TCPA_HUMAN : 437- 446: sreql AiaefArslL vipnt TCPA_HUMAN : 517- 525: kslkf Atea-AitiL riddl TCPA_RAT : 369- 377: ikntk Arts-AsiiL rgand TCPA_RAT : 437- 446: sreql AiaefArslL vipnt TCPA_RAT : 517- 525: kslkf Atea-AitiL riddl TCPA_YEAST : 208- 217: vnvlk AhgksAtesL lvpgy TCPA_YEAST : 447- 456: sreql AiaefAaalL iipkt TCPB_MOUSE : 133- 141: sgwre Atka-AreaL lssav TCPB_MOUSE : 507- 515: qvlls Aaea-AeviL rvdni TCPB_YEAST : 127- 135: egyrl Asaa-AldaL tkaav TCPB_YEAST : 229- 238: krien AkiliAnttL dtdkv TCPB_YEAST : 432- 440: slave Afar-AlrqL ptila TCPB_YEAST : 501- 509: avvss Asea-AevlL rvdni TCPD_MOUSE : 308- 317: silrd AlsdlAlhfL nkmki TCPD_YEAST : 102- 110: viltg Allg-AaerL lnkgi TCPD_YEAST : 102- 111: viltg AllgaAerlL nkgih TCPD_YEAST : 296- 305: silrd AvndlAlhfL sklni TCPE_AVESA : 111- 120: vvmag AlleqAeklL ergih TCPE_AVESA : 136- 144: egyem Asri-AvdhL esist TCPE_MOUSE : 115- 124: vvlag AlleeAeqlL drgih TCPE_MOUSE : 140- 148: dgyeq Aari-AiqhL dkisd TCPE_YEAST : 142- 150: ngfde Aakl-AiskL eetcd TCPG_MOUSE : 509- 517: qtykt Avet-AvllL riddi TCPG_YEAST : 71- 79: reidv Ahpa-AksmL elsrt TCPG_YEAST : 513- 521: qsvkt Aies-AcllL rvddi TCPH_MOUSE : 453- 461: qlcdn Agfd-AtniL nklra TCPH_YEAST : 269- 277: vedyq Aivd-AewqL ifekl TCPH_YEAST : 457- 465: qlcen Agfd-AieiL nklrl TCPQ_MOUSE : 110- 119: lvfag AllelAeelL rigls TCPQ_MOUSE : 135- 143: sgyei Ackk-AheiL pelvc TCPQ_MOUSE : 511- 519: waikl Atna-AvtvL rvdqi TCPQ_YEAST : 531- 539: fainv Atea-AttvL sidqi TCPZ_CAEEL : 14- 22: pkael Arha-AaleL nisga TCPZ_CAEEL : 417- 426: lpgaa AfeiaAyvmL kkdve TCPZ_CAEEL : 441- 449: raklg Aeaf-AqalL vipkt TCPZ_CAEEL : 512- 520: nsiss Atvl-AcnlL lvdev TCPZ_HUMAN : 11- 20: tlnpk AevarAqaaL avnis TCPZ_HUMAN : 21- 30: aqaal AvnisAargL qdvlr TCPZ_HUMAN : 125- 134: tegfe AakekAlqfL eevkv TCPZ_HUMAN : 126- 134: egfea Akek-AlqfL eevkv TCPZ_MOUSE : 11- 20: tlnpk AevarAqaaL avnis TCPZ_MOUSE : 21- 30: aqaal AvnisAargL qdvlr TCPZ_MOUSE : 125- 134: tegfe AakekAlqfL eqvkv TCPZ_MOUSE : 126- 134: egfea Akek-AlqfL eqvkv TCPZ_YEAST : 520- 528: naitg Atgi-AsnlL lcdel TF55_SULSH : 172- 180: slgsk Avag-AreyL adlvv TF55_SULSH : 445- 453: qlaie Ayan-AiegL imila TF56_SULSH : 96- 104: dgtts Avvl-AgalL ekaes TF56_SULSH : 102- 111: vvlag AllekAeslL dqnih TF56_SULSH : 127- 135: egykk Aytk-AlelL pqlgt TF56_SULSH : 371- 380: vfieg AknlkAvniL lrgsn TF56_SULSH : 460- 468: ilaet Agle-AisaL mdlra TF56_SULSH : 514- 522: qvlks Atea-AtaiL kiddl J 10: 12.0102 74( 27) A-x(2,3)-A-x(4)-L Occurences: 74(27) TCP2_MOUSE : 303- 312: kyfve AgamAvrrvL krdlk TCP2_MOUSE : 414- 423: vpggg AveaAlsiyL enyat TCP2_MOUSE : 517- 525: kslkf Ate-AaitiL riddl TCPA_ARATH : 413- 422: sntvv AgggAvesaL svyle TCPA_ARATH : 417- 426: vaggg AvesAlsvyL ehlat TCPA_ARATH : 520- 528: kiiqf Ate-AaitiL riddm TCPA_CAEEL : 413- 422: skklv AgggAvetsL slfle TCPA_CAEEL : 520- 528: kslkf Ate-AaitiL riddl TCPA_CRIGR : 303- 312: kyfve AgamAvrrvL krdlk TCPA_CRIGR : 414- 423: vpggg AveaAlsiyL enyat TCPA_CRIGR : 517- 525: kslkf Ate-AaitiL riddl TCPA_DROME : 325- 334: kiiak AtgaAfitsL tnmdg TCPA_DROME : 372- 380: ikgtk Ara-AasiiL rgpnd TCPA_DROME : 430- 439: ylenf AtslAsreqL aiaef TCPA_DROME : 520- 528: kslkf Ate-AaitiL riddm TCPA_HUMAN : 303- 312: kyfve AgamAvrrvL krdlk TCPA_HUMAN : 414- 423: vpggg AveaAlsiyL enyat TCPA_HUMAN : 517- 525: kslkf Ate-AaitiL riddl TCPA_RAT : 303- 312: kyfve AgamAvrrvL krdlk TCPA_RAT : 414- 423: vpggg AveaAlsiyL enyat TCPA_RAT : 517- 525: kslkf Ate-AaitiL riddl TCPA_YEAST : 531- 539: kslkl Ale-AcvaiL ridtm TCPB_MOUSE : 133- 141: sgwre Atk-AareaL lssav TCPB_MOUSE : 133- 142: sgwre AtkaArealL ssavd TCPB_MOUSE : 315- 323: maieh Adf-AgverL alvtg TCPB_MOUSE : 366- 375: hfsgv AlgeActivL rgatq TCPB_MOUSE : 507- 515: qvlls Aae-AaeviL rvdni TCPB_YEAST : 127- 135: egyrl Asa-AaldaL tkaav TCPB_YEAST : 174- 182: dkdhf Ael-AtnaiL rlkgs TCPB_YEAST : 361- 369: fsgck Age-ActivL rgatd TCPB_YEAST : 429- 437: gkksl Ave-AfaraL rqlpt TCPB_YEAST : 501- 509: avvss Ase-AaevlL rvdni TCPD_MOUSE : 43- 52: isaak AvadAirtsL gpkgm TCPD_MOUSE : 359- 367: dmlgs Ael-AeevsL ngsgk TCPD_MOUSE : 423- 432: krali AgggApeieL alrlt TCPD_YEAST : 102- 111: viltg AllgAaerlL nkgih TCPD_YEAST : 171- 179: yssfl Apl-AvdsvL kisde TCPE_AVESA : 35- 44: hkani AaakAiariL rtslg TCPE_AVESA : 36- 44: kania Aak-AiariL rtslg TCPE_AVESA : 443- 451: gveqy Air-AfadaL daipl TCPE_AVESA : 450- 458: rafad Ald-AiplaL aensg TCPE_MOUSE : 186- 194: chrqm Aei-AvnavL tvadm TCPE_MOUSE : 447- 455: tleqy Amr-AfadaL evipm TCPE_YEAST : 408- 416: mivde Aer-AlhdsL cvvrn TCPG_MOUSE : 413- 422: vpggg AsemAvahaL teksk TCPG_YEAST : 71- 79: reidv Ahp-AaksmL elsrt TCPG_YEAST : 124- 133: viiiq AlkkAltdaL evikq TCPG_YEAST : 399- 408: rnlqd AmavArnvmL spsls TCPG_YEAST : 418- 427: spggg AtemAvsvkL aekak TCPH_MOUSE : 159- 167: mlekc Amt-AlsskL isqqk TCPH_MOUSE : 265- 274: vedyq AivdAewniL ydkle TCPH_MOUSE : 407- 416: ndsvv AgggAiemeL skylr TCPH_YEAST : 32- 40: isnin Acv-AvqeaL kptlg TCPH_YEAST : 35- 44: inacv AvqeAlkptL gplgs TCPH_YEAST : 162- 170: llerc Art-AmsskL ihnna TCPH_YEAST : 510- 518: nalns Ate-AtnliL svdet TCPQ_MOUSE : 444- 452: kkfae Afe-AipraL aensg TCPQ_MOUSE : 484- 493: gldie AevpAvkdmL easil TCPQ_MOUSE : 511- 519: waikl Atn-AavtvL rvdqi TCPQ_YEAST : 531- 539: fainv Ate-AattvL sidqi TCPZ_CAEEL : 14- 22: pkael Arh-AaaleL nisga TCPZ_CAEEL : 417- 426: lpgaa AfeiAayvmL kkdve TCPZ_CAEEL : 512- 521: nsiss AtvlAcnllL vdevm TCPZ_HUMAN : 413- 422: vpgag AvevAmaeaL ikhkp TCPZ_MOUSE : 413- 422: vpgag AvevAlaeaL ikykp TCPZ_YEAST : 417- 426: ipgag AfyiAlsryL rsanm TCPZ_YEAST : 520- 529: naitg AtgiAsnllL cdell TF55_SULSH : 36- 45: lrani AavkAieeaL kstyg TF55_SULSH : 37- 45: rania Avk-AieeaL kstyg TF55_SULSH : 318- 327: kkgil AvrrAkksdL eklar TF55_SULSH : 514- 523: mnaik AateAvtlvL riddi TF55_SULSH : 515- 523: naika Ate-AvtlvL riddi TF56_SULSH : 399- 407: rsind Alh-AlrniL lepvi TF56_SULSH : 441- 449: gkeql Aie-AfadaL eeipt TF56_SULSH : 514- 522: qvlks Ate-AataiL kiddl K 11: 12.0102 53( 27) A-x(0,1)-L-x-V Occurences: 53(27) TCP2_MOUSE : 175- 179: nmvvd AvLaV kytda TCP2_MOUSE : 395- 398: rslhd A-LcV vkrvl TCPA_ARATH : 172- 176: dsdff AnLvV eavls TCPA_ARATH : 178- 182: nlvve AvLsV kmtnq TCPA_ARATH : 421- 424: gaves A-LsV ylehl TCPA_CAEEL : 328- 332: akatg AtLtV slatl TCPA_CRIGR : 175- 179: nmvvd AvLaV kytdl TCPA_CRIGR : 395- 398: rslhd A-LcV vkrvl TCPA_DROME : 398- 401: rsvhd A-LcV vkrvl TCPA_HUMAN : 395- 398: rslhd A-LcV vkrvl TCPA_RAT : 175- 179: nmvvd AvLaV kytdi TCPA_RAT : 395- 398: rslhd A-LcV vkrvl TCPA_YEAST : 183- 187: nmvvd AlLaV ktqns TCPB_MOUSE : 59- 63: ssgrd AaLmV tndga TCPB_MOUSE : 60- 63: sgrda A-LmV tndga TCPB_MOUSE : 393- 396: rslhd A-LcV laqtv TCPB_YEAST : 387- 390: rslhd A-LsV lsqtt TCPD_MOUSE : 408- 411: rsihd A-LcV irclv TCPD_YEAST : 171- 175: yssfl ApLaV dsvlk TCPD_YEAST : 397- 400: rslhd A-LcV irclv TCPD_YEAST : 446- 449: qefas A-LeV ipttl TCPE_AVESA : 84- 88: vdnqi AkLlV elsrs TCPE_AVESA : 188- 192: eisvk AvLaV adler TCPE_AVESA : 401- 404: rsihd A-LcV arnli TCPE_MOUSE : 88- 92: vdhqi AkLmV elsks TCPE_MOUSE : 192- 196: eiavn AvLtV admer TCPE_MOUSE : 405- 408: rslhd A-LcV irnli TCPE_MOUSE : 430- 433: aeisc A-LaV sqead TCPE_MOUSE : 454- 457: rafad A-LeV ipmal TCPE_YEAST : 90- 94: ldnei AkLlV qlsks TCPG_MOUSE : 443- 446: ravaq A-LeV iprtl TCPG_YEAST : 132- 135: kaltd A-LeV ikqvs TCPH_MOUSE : 238- 242: knpki AlLnV elelk TCPH_MOUSE : 510- 514: aasea AcLiV svdet TCPH_YEAST : 445- 448: nafak A-LeV iprql TCPQ_MOUSE : 2- 5: m A-LhV pkapg TCPQ_YEAST : 467- 471: tlaet AgLdV nevlp TCPZ_CAEEL : 447- 450: eafaq A-LlV ipktl TCPZ_HUMAN : 18- 22: varaq AaLaV nisaa TCPZ_HUMAN : 19- 22: araqa A-LaV nisaa TCPZ_HUMAN : 433- 437: svkgr AqLgV qafad TCPZ_MOUSE : 18- 22: varaq AaLaV nisaa TCPZ_MOUSE : 19- 22: araqa A-LaV nisaa TCPZ_MOUSE : 433- 437: svkgr AqLgV qafad TCPZ_YEAST : 17- 21: slrrd AaLkV nvtsa TCPZ_YEAST : 18- 21: lrrda A-LkV nvtsa TCPZ_YEAST : 177- 181: pivtd AvLsV ydaqa TCPZ_YEAST : 450- 453: eafae A-LlV ipktl TF55_SULSH : 181- 185: areyl AdLvV kavaq TF55_SULSH : 250- 254: ialld AsLeV ekpel TF56_SULSH : 75- 79: iqhpa AkLlV eaaka TF56_SULSH : 249- 253: iavld AaLeV ekpei TF56_SULSH : 250- 253: avlda A-LeV ekpei L 12: 12.0102 48( 27) G-A-x(1,2)-I Occurences: 48(27) TCP2_MOUSE : 58- 61: titnd GAt-I lklle TCP2_MOUSE : 282- 286: kilat GAnvI lttgg TCP2_MOUSE : 324- 327: vakas GAs-I lstla TCPA_ARATH : 61- 64: titnd GAt-I lrmle TCPA_ARATH : 285- 289: kllka GAnvI lttkg TCPA_CAEEL : 62- 65: ivtnd GAt-I lkqle TCPA_CRIGR : 58- 61: titnd GAt-I lklle TCPA_CRIGR : 282- 286: kilat GAnvI lttgg TCPA_CRIGR : 324- 327: iakas GAs-I lstla TCPA_DROME : 61- 64: tvtnd GAt-I lrlle TCPA_DROME : 327- 331: iakat GAafI tsltn TCPA_HUMAN : 58- 61: titnd GAt-I lklle TCPA_HUMAN : 282- 286: kilat GAnvI lttgg TCPA_HUMAN : 324- 327: iakas GAt-I lstla TCPA_RAT : 58- 61: titnd GAt-I lklle TCPA_RAT : 282- 286: kilat GAnvI lttgg TCPA_RAT : 324- 327: iakas GAs-I lstla TCPA_YEAST : 66- 69: tvtnd GAt-I lslld TCPB_MOUSE : 31- 35: lssfi GAiaI gdlvk TCPB_MOUSE : 67- 70: mvtnd GAt-I lknig TCPB_YEAST : 60- 63: mvtnd GAt-I lksip TCPD_MOUSE : 74- 77: titnd GAt-I lkqmq TCPD_MOUSE : 426- 430: liagg GApeI elalr TCPD_YEAST : 415- 419: liagg GApeI eisrr TCPE_AVESA : 70- 73: titnd GAt-I lelmd TCPE_MOUSE : 74- 77: titnd GAt-I lsmmd TCPE_MOUSE : 423- 427: vvygg GAaeI scala TCPE_YEAST : 76- 79: titnd GAt-I lsqme TCPG_MOUSE : 328- 331: iarac GAr-I vsrpe TCPG_MOUSE : 456- 460: liqnc GAstI rllts TCPG_YEAST : 333- 336: iarvt GAt-I vnrve TCPH_MOUSE : 62- 65: tisnd GAt-I lklld TCPH_MOUSE : 285- 289: kihqs GAkvI lsklp TCPH_YEAST : 66- 69: tisnd GAt-I lklld TCPH_YEAST : 289- 292: qveet GAn-I vlskl TCPQ_MOUSE : 287- 291: aiagt GAnvI vtggk TCPQ_MOUSE : 413- 417: lvpgg GAteI elakq TCPQ_YEAST : 424- 428: llpga GAteI elisr TCPZ_CAEEL : 50- 54: kmlvs GAgdI kltkd TCPZ_HUMAN : 50- 54: kmlvs GAgdI kltkd TCPZ_MOUSE : 50- 54: kmlvs GAgdI kltkd TCPZ_YEAST : 49- 53: kmlvd GAgnI kltkd TCPZ_YEAST : 416- 420: iipga GAfyI alsry TCPZ_YEAST : 519- 523: rnait GAtgI asnll TF55_SULSH : 71- 74: titnd GAt-I ldkmd TF55_SULSH : 418- 422: avagg GAveI eiakr TF56_SULSH : 61- 64: titnd GAt-I vkdme TF56_SULSH : 334- 337: lekal GAr-I issik TF56_SULSH : 334- 338: lekal GAriI ssikd M 13: 11.5102 54( 27) L-x(1,2)-D-x(1,2)-I Occurences: 54(27) TCP2_MOUSE : 45- 49: gldkm Lv-Dd-I gdvti TCP2_MOUSE : 143- 149: intde LgrDclI ntakt TCP2_MOUSE : 525- 531: aaiti LriDdlI klhpe TCPA_ARATH : 48- 52: gldkm Lv-Dd-I gdvti TCPA_ARATH : 528- 534: aaiti LriDdmI klvkd TCPA_CAEEL : 528- 534: aaiti LriDdlI kldkq TCPA_CRIGR : 45- 49: gldkm Lv-Dd-I gdvti TCPA_CRIGR : 143- 149: intde LgrDclI naakt TCPA_CRIGR : 525- 531: aaiti LriDdlI klhpe TCPA_DROME : 48- 52: gldkm Lv-Dd-I gdvtv TCPA_DROME : 146- 152: apvde LgrDslI niakt TCPA_DROME : 528- 534: aaiti LriDdmI klnpe TCPA_HUMAN : 45- 49: gldkm Lv-Dd-I gdvti TCPA_HUMAN : 143- 149: vntde LgrDclI naakt TCPA_HUMAN : 525- 531: aaiti LriDdlI klhpe TCPA_RAT : 45- 49: gldkm Lv-Dd-I gdvti TCPA_RAT : 143- 149: intde LgrDclI naakt TCPA_RAT : 525- 531: aaiti LriDdlI klhpe TCPA_YEAST : 53- 57: gldkm Lv-Dd-I gdftv TCPA_YEAST : 539- 545: acvai LriDtmI tvdpe TCPB_MOUSE : 219- 224: ldegf Ll-DkkI gvnqp TCPB_MOUSE : 515- 520: aaevi LrvDn-I ikaap TCPB_MOUSE : 515- 521: aaevi LrvDniI kaapr TCPB_YEAST : 297- 303: dypeq LftDlgI nsieh TCPB_YEAST : 509- 514: aaevl LrvDn-I irarp TCPB_YEAST : 509- 515: aaevl LrvDniI rarpr TCPD_MOUSE : 205- 210: atsvd Lr-DikI vkklg TCPD_YEAST : 478- 482: henge Ln-Dg-I svrrs TCPD_YEAST : 519- 524: cvksi LriDd-I afsr TCPE_AVESA : 524- 530: vvkmi LkiDdvI tpsey TCPE_MOUSE : 123- 128: eeaeq Ll-DrgI hpiri TCPE_MOUSE : 528- 533: mvrmi LkiDd-I rkpge TCPE_YEAST : 538- 544: lcrmi LkiDnvI isgkd TCPG_MOUSE : 130- 134: ayrma Ld-Dm-I stlkk TCPG_MOUSE : 278- 283: eyihq LceDi-I qlkpd TCPG_MOUSE : 285- 291: ediiq LkpDvvI tekgi TCPG_MOUSE : 517- 522: tavll LriDd-I vsghk TCPG_YEAST : 521- 526: sacll LrvDd-I vsgvr TCPH_MOUSE : 389- 393: eters Lh-Da-I mivrr TCPH_YEAST : 47- 53: ptlgp LgsDilI vtsnq TCPH_YEAST : 194- 199: ldrnd Ld-DklI gikki TCPH_YEAST : 393- 397: evers Lh-Da-I mivkr TCPH_YEAST : 518- 524: atnli LsvDetI tnkgs TCPQ_MOUSE : 384- 388: gstdn Lm-Dd-I eravd TCPQ_MOUSE : 519- 524: aavtv LrvDq-I imakp TCPQ_MOUSE : 519- 525: aavtv LrvDqiI makpa TCPQ_YEAST : 539- 544: aattv LsiDq-I imakk TCPQ_YEAST : 539- 545: aattv LsiDqiI makka TCPZ_CAEEL : 164- 168: klhqk La-Dh-I tecvv TCPZ_HUMAN : 516- 521: iatni LlvDe-I mragm TCPZ_HUMAN : 517- 521: atnil Lv-De-I mragm TCPZ_MOUSE : 516- 521: iatni LlvDe-I mragm TCPZ_MOUSE : 517- 521: atnil Lv-De-I mragm TCPZ_YEAST : 406- 411: avanv Lk-DknI ipgag TF55_SULSH : 62- 67: mfvds Lg-DitI tndga TF55_SULSH : 523- 528: avtlv LriDd-I vaagk TF56_SULSH : 110- 115: ekaes Ll-DqnI hptii TF56_SULSH : 522- 528: aatai LkiDdlI aaapl N 14: 11.5102 44( 27) A-E-x(2,4)-L Occurences: 44(27) TCP2_MOUSE : 439- 445: eqlai AEfarsL lvipn TCPA_ARATH : 442- 448: eqlai AEfadaL liipk TCPA_CAEEL : 442- 448: eqlav AEfasaL liipk TCPA_CRIGR : 439- 445: eqlai AEfarsL lvipn TCPA_DROME : 442- 448: eqlai AEfaksL lvipk TCPA_HUMAN : 439- 445: eqlai AEfarsL lvipn TCPA_RAT : 439- 445: eqlai AEfarsL lvipn TCPA_YEAST : 449- 455: eqlai AEfaaaL liipk TCPB_MOUSE : 21- 26: adeer AEiar-L ssfig TCPB_MOUSE : 386- 390: qilde AErs--L hdalc TCPB_MOUSE : 511- 515: saaea AEvi--L rvdni TCPB_YEAST : 15- 20: vteer AEnar-L safvg TCPB_YEAST : 380- 384: qtlde AErs--L hdals TCPB_YEAST : 505- 509: sasea AEvl--L rvdni TCPD_MOUSE : 362- 367: gsael AEevs-L ngsgk TCPD_MOUSE : 466- 471: ipstl AEnag-L npist TCPD_YEAST : 107- 111: allga AErl--L nkgih TCPD_YEAST : 455- 460: ipttl AEnag-L nsikv TCPE_AVESA : 116- 120: alleq AEkl--L ergih TCPE_AVESA : 459- 464: iplal AEnsg-L ppidt TCPE_MOUSE : 120- 124: allee AEql--L drgih TCPE_MOUSE : 425- 431: yggga AEiscaL avsqe TCPE_YEAST : 408- 412: mivde AEra--L hdslc TCPE_YEAST : 435- 441: yggga AEvtmsL avsee TCPE_YEAST : 473- 478: ipmtl AEnsg-L dpigt TCPG_MOUSE : 109- 113: emlsv AEhf--L eqqmh TCPG_YEAST : 428- 434: vsvkl AEkakqL egiqq TCPH_MOUSE : 269- 274: qaivd AEwni-L ydkle TCPH_YEAST : 273- 277: qaivd AEwq--L ifekl TCPH_YEAST : 387- 393: aeqvi AEversL hdaim TCPQ_MOUSE : 115- 119: allel AEel--L rigls TCPQ_YEAST : 464- 469: vprtl AEtag-L dvnev TCPZ_CAEEL : 106- 111: ellkq AEslv-L eglhp TCPZ_HUMAN : 162- 168: rtkvh AEladvL teavv TCPZ_HUMAN : 253- 259: ffyks AEerekL vkaer TCPZ_MOUSE : 162- 168: rtkvh AEladvL teavv TCPZ_MOUSE : 253- 259: ffyks AEerekL vkaer TCPZ_YEAST : 448- 452: gieaf AEal--L vipkt TF55_SULSH : 117- 121: elakk AEdl--L ykeih TF55_SULSH : 137- 142: sgykk AEeia-L ktiqd TF55_SULSH : 458- 463: limil AEnag-L dpidk TF56_SULSH : 107- 111: allek AEsl--L dqnih TF56_SULSH : 170- 175: askfi AEgae-L nkiid TF56_SULSH : 457- 462: iptil AEtag-L eaisa O 15: 11.5102 82( 27) A-x(0,1)-E-x(1,2)-L Occurences: 82(27) TCP2_MOUSE : 97- 101: svvii AaEl-L knade TCP2_MOUSE : 98- 101: vviia A-El-L knade TCP2_MOUSE : 414- 419: vpggg AvEaaL siyle TCPA_ARATH : 100- 104: svviv AaEl-L krand TCPA_ARATH : 101- 104: vviva A-El-L krand TCPA_ARATH : 417- 422: vaggg AvEsaL svyle TCPA_CAEEL : 101- 105: svviv AaEl-L krade TCPA_CAEEL : 102- 105: vviva A-El-L krade TCPA_CAEEL : 208- 213: ahgks ArEsvL vkgya TCPA_CAEEL : 417- 422: vaggg AvEtsL slfle TCPA_CRIGR : 97- 101: svvii AaEl-L knade TCPA_CRIGR : 98- 101: vviia A-El-L knade TCPA_CRIGR : 414- 419: vpggg AvEaaL siyle TCPA_DROME : 100- 104: svvil AaEl-L knade TCPA_DROME : 101- 104: vvila A-El-L knade TCPA_DROME : 208- 213: ahgks ArEsvL ipgya TCPA_HUMAN : 97- 101: svvii AaEl-L knade TCPA_HUMAN : 98- 101: vviia A-El-L knade TCPA_HUMAN : 414- 419: vpggg AvEaaL siyle TCPA_RAT : 97- 101: svvii AaEl-L knade TCPA_RAT : 98- 101: vviia A-El-L knade TCPA_RAT : 414- 419: vpggg AvEaaL siyle TCPA_YEAST : 105- 109: svvii AsEl-L krane TCPA_YEAST : 213- 217: ahgks AtEs-L lvpgy TCPA_YEAST : 213- 218: ahgks AtEslL vpgya TCPB_MOUSE : 106- 110: svtvl AaEl-L reaes TCPB_MOUSE : 107- 110: vtvla A-El-L reaes TCPB_MOUSE : 113- 116: ellre A-Es-L iakki TCPB_MOUSE : 137- 141: eatka ArEa-L lssav TCPB_MOUSE : 137- 142: eatka ArEalL ssavd TCPB_MOUSE : 183- 188: hftkl AvEagL rlkgs TCPB_MOUSE : 386- 390: qilde A-ErsL hdalc TCPB_MOUSE : 510- 515: lsaae AaEviL rvdni TCPB_MOUSE : 511- 515: saaea A-EviL rvdni TCPB_YEAST : 100- 103: vtvls A-El-L reaek TCPB_YEAST : 106- 109: ellre A-Ek-L idqsk TCPB_YEAST : 380- 384: qtlde A-ErsL hdals TCPB_YEAST : 504- 508: ssase AaEv-L lrvdn TCPB_YEAST : 504- 509: ssase AaEvlL rvdni TCPB_YEAST : 505- 508: sasea A-Ev-L lrvdn TCPB_YEAST : 505- 509: sasea A-EvlL rvdni TCPD_MOUSE : 140- 145: esfqk AlEkgL eiltd TCPD_MOUSE : 362- 367: gsael AeEvsL ngsgk TCPD_MOUSE : 427- 432: iaggg ApEieL alrlt TCPD_YEAST : 106- 110: gallg AaEr-L lnkgi TCPD_YEAST : 106- 111: gallg AaErlL nkgih TCPD_YEAST : 107- 110: allga A-Er-L lnkgi TCPD_YEAST : 107- 111: allga A-ErlL nkgih TCPE_AVESA : 116- 119: alleq A-Ek-L lergi TCPE_AVESA : 116- 120: alleq A-EklL ergih TCPE_MOUSE : 120- 123: allee A-Eq-L ldrgi TCPE_MOUSE : 120- 124: allee A-EqlL drgih TCPE_YEAST : 408- 412: mivde A-EraL hdslc TCPG_MOUSE : 102- 106: sviil AgEm-L svaeh TCPG_MOUSE : 109- 113: emlsv A-EhfL eqqmh TCPG_YEAST : 100- 104: tviil AgEi-L aqcap TCPH_MOUSE : 101- 105: svtll AaEf-L kqvkp TCPH_MOUSE : 102- 105: vtlla A-Ef-L kqvkp TCPH_MOUSE : 411- 416: vaggg AiEmeL skylr TCPH_YEAST : 208- 213: kipgg AmEesL fingv TCPH_YEAST : 273- 277: qaivd A-EwqL ifekl TCPH_YEAST : 461- 465: nagfd AiEi-L nklrl TCPQ_MOUSE : 115- 118: allel A-Ee-L lrigl TCPQ_MOUSE : 115- 119: allel AeEl-L rigls TCPQ_MOUSE : 115- 119: allel A-EelL rigls TCPQ_MOUSE : 139- 143: iackk AhEi-L pelvc TCPQ_MOUSE : 262- 265: vlikt A-Ee-L mnfsk TCPQ_MOUSE : 414- 419: vpggg AtEieL akqit TCPQ_YEAST : 107- 111: lvmil AgEl-L nvsek TCPQ_YEAST : 270- 274: vllhn AqEm-L dfskg TCPQ_YEAST : 425- 430: lpgag AtEieL isrit TCPZ_CAEEL : 106- 109: ellkq A-Es-L vlegl TCPZ_CAEEL : 310- 315: sldll AsEgiL alrra TCPZ_CAEEL : 463- 467: nggyd AqEt-L vklie TCPZ_HUMAN : 126- 131: egfea AkEkaL qflee TCPZ_HUMAN : 419- 422: vevam A-Ea-L ikhkp TCPZ_MOUSE : 126- 131: egfea AkEkaL qfleq TCPZ_MOUSE : 413- 418: vpgag AvEvaL aeali TCPZ_MOUSE : 419- 422: veval A-Ea-L ikykp TCPZ_YEAST : 10- 13: llnpk A-Es-L rrdaa TCPZ_YEAST : 26- 29: vnvts A-Eg-L qsvle TCPZ_YEAST : 448- 451: gieaf A-Ea-L lvipk TCPZ_YEAST : 448- 452: gieaf A-EalL vipkt TF55_SULSH : 40- 45: iaavk AiEeaL kstyg TF55_SULSH : 117- 120: elakk A-Ed-L lykei TF55_SULSH : 117- 121: elakk A-EdlL ykeih TF55_SULSH : 137- 142: sgykk AeEiaL ktiqd TF55_SULSH : 176- 180: kavag ArEy-L adlvv TF55_SULSH : 449- 453: eayan AiEg-L imila TF56_SULSH : 32- 35: aaktl A-Em-L rsslg TF56_SULSH : 107- 110: allek A-Es-L ldqni TF56_SULSH : 107- 111: allek A-EslL dqnih TF56_SULSH : 131- 135: kaytk AlEl-L pqlgt TF56_SULSH : 190- 193: aivnv A-Ep-L pnggy TF56_SULSH : 418- 423: lpggg AiEleL amklr P 16: 11.5102 66( 27) A-x(0,1)-A-x(0,1)-E Occurences: 66(27) TCP2_MOUSE : 97- 99: svvii A-A-E llkna TCP2_MOUSE : 437- 440: sreql AiA-E farsl TCPA_ARATH : 100- 102: svviv A-A-E llkra TCPA_ARATH : 440- 443: sreql AiA-E fadal TCPA_CAEEL : 101- 103: svviv A-A-E llkra TCPA_CAEEL : 179- 181: elvvd A-A-E avrve TCPA_CAEEL : 440- 443: sreql AvA-E fasal TCPA_CRIGR : 97- 99: svvii A-A-E llkna TCPA_CRIGR : 437- 440: sreql AiA-E farsl TCPA_DROME : 100- 102: svvil A-A-E llkna TCPA_DROME : 166- 169: skiig AdA-E ffsam TCPA_DROME : 351- 353: smvge A-A-E vaqer TCPA_DROME : 440- 443: sreql AiA-E faksl TCPA_DROME : 551- 554: yadac A-AgE ldg TCPA_HUMAN : 97- 99: svvii A-A-E llkna TCPA_HUMAN : 437- 440: sreql AiA-E farsl TCPA_RAT : 97- 99: svvii A-A-E llkna TCPA_RAT : 437- 440: sreql AiA-E farsl TCPA_YEAST : 447- 450: sreql AiA-E faaal TCPB_MOUSE : 14- 18: vnifk AgAdE eraei TCPB_MOUSE : 106- 108: svtvl A-A-E llrea TCPB_MOUSE : 136- 139: reatk A-ArE allss TCPB_MOUSE : 433- 437: tpgke AvAmE sfaka TCPB_MOUSE : 507- 509: qvlls A-A-E aaevi TCPB_MOUSE : 508- 512: vllsa AeAaE vilrv TCPB_MOUSE : 510- 512: lsaae A-A-E vilrv TCPB_YEAST : 504- 506: ssase A-A-E vllrv TCPD_MOUSE : 455- 459: cvraf AdAmE vipst TCPD_YEAST : 106- 108: gallg A-A-E rllnk TCPD_YEAST : 444- 448: iwqef AsAlE viptt TCPE_AVESA : 180- 183: srckr AlA-E isvka TCPE_AVESA : 457- 460: daipl AlA-E nsglp TCPE_MOUSE : 424- 426: vyggg A-A-E iscal TCPE_MOUSE : 452- 456: amraf AdAlE vipma TCPE_YEAST : 434- 436: vyggg A-A-E vtmsl TCPG_MOUSE : 441- 445: pyrav AqAlE viprt TCPG_YEAST : 446- 450: pyqav AdAmE ciprt TCPH_MOUSE : 101- 103: svtll A-A-E flkqv TCPH_MOUSE : 439- 443: ligay AkAlE iiprq TCPH_MOUSE : 505- 508: inalt A-AsE aacli TCPH_YEAST : 443- 447: iinaf AkAlE viprq TCPQ_MOUSE : 442- 446: aikkf AeAfE aipra TCPQ_MOUSE : 451- 454: eaipr AlA-E nsgvk TCPQ_YEAST : 423- 427: kllpg AgAtE ielis TCPQ_YEAST : 453- 457: aikqf AvAfE vvprt TCPZ_CAEEL : 17- 21: elarh AaAlE lnisg TCPZ_CAEEL : 18- 21: larha A-AlE lnisg TCPZ_CAEEL : 261- 263: reall A-A-E refit TCPZ_CAEEL : 415- 419: avlpg AaAfE iaayv TCPZ_CAEEL : 416- 419: vlpga A-AfE iaayv TCPZ_HUMAN : 125- 128: tegfe A-AkE kalqf TCPZ_HUMAN : 411- 415: cvvpg AgAvE vamae TCPZ_HUMAN : 417- 420: gavev AmA-E alikh TCPZ_HUMAN : 489- 491: gepmv A-A-E vgvwd TCPZ_MOUSE : 125- 128: tegfe A-AkE kalqf TCPZ_MOUSE : 304- 308: pfsld AlAkE gival TCPZ_MOUSE : 411- 415: cvvpg AgAvE valae TCPZ_MOUSE : 417- 420: gavev AlA-E aliky TCPZ_MOUSE : 489- 491: gepmv A-A-E mgvwd TCPZ_YEAST : 263- 266: qrdkl A-AsE rkfvd TCPZ_YEAST : 446- 449: ktgie AfA-E allvi TF55_SULSH : 174- 178: gskav AgArE yladl TF55_SULSH : 447- 451: aieay AnAiE glimi TF55_SULSH : 514- 517: mnaik A-AtE avtlv TF56_SULSH : 249- 252: iavld A-AlE vekpe TF56_SULSH : 446- 450: aieaf AdAlE eipti Q 17: 11.5102 91( 27) A-x(0,1)-A-x(2,3)-L Occurences: 91(27) TCP2_MOUSE : 71- 75: evehp A-Akv-L celad TCP2_MOUSE : 97- 101: svvii A-Ael-L knade TCP2_MOUSE : 520- 525: kfate A-AitiL riddl TCPA_ARATH : 74- 78: evehp A-Akv-L velae TCPA_ARATH : 100- 104: svviv A-Ael-L krand TCPA_ARATH : 284- 290: ekllk AgAnviL ttkgi TCPA_ARATH : 523- 528: qfate A-AitiL riddm TCPA_CAEEL : 101- 105: svviv A-Ael-L krade TCPA_CAEEL : 284- 290: dkilk AgAnvvL ttggi TCPA_CAEEL : 523- 528: kfate A-AitiL riddl TCPA_CRIGR : 71- 75: evehp A-Akv-L celad TCPA_CRIGR : 97- 101: svvii A-Ael-L knade TCPA_CRIGR : 520- 525: kfate A-AitiL riddl TCPA_DROME : 74- 78: evehp A-Akv-L velaq TCPA_DROME : 100- 104: svvil A-Ael-L knade TCPA_DROME : 374- 380: gtkar AaAsiiL rgpnd TCPA_DROME : 375- 380: tkara A-AsiiL rgpnd TCPA_DROME : 523- 528: kfate A-AitiL riddm TCPA_DROME : 549- 555: ksyad AcAageL dg TCPA_DROME : 551- 555: yadac A-Age-L dg TCPA_HUMAN : 71- 75: evehp A-Akv-L celad TCPA_HUMAN : 97- 101: svvii A-Ael-L knade TCPA_HUMAN : 520- 525: kfate A-AitiL riddl TCPA_RAT : 71- 75: evehp A-Akv-L celad TCPA_RAT : 97- 101: svvii A-Ael-L knade TCPA_RAT : 520- 525: kfate A-AitiL riddl TCPA_YEAST : 291- 297: kkiid AgAqvvL ttkgi TCPA_YEAST : 452- 456: aiaef A-Aal-L iipkt TCPB_MOUSE : 32- 38: ssfig AiAigdL vkstl TCPB_MOUSE : 80- 84: gvdnp A-Akv-L vdmsr TCPB_MOUSE : 106- 110: svtvl A-Ael-L reaes TCPB_MOUSE : 136- 141: reatk A-AreaL lssav TCPB_MOUSE : 418- 424: semlm AhAvtqL anrtp TCPB_MOUSE : 440- 446: amesf AkAlrmL ptiia TCPB_MOUSE : 510- 515: lsaae A-AeviL rvdni TCPB_YEAST : 26- 32: safvg AiAvgdL vkstl TCPB_YEAST : 73- 77: pldnp A-Akv-L vnisk TCPB_YEAST : 127- 132: egyrl AsAaa-L daltk TCPB_YEAST : 129- 135: yrlas AaAldaL tkaav TCPB_YEAST : 130- 135: rlasa A-AldaL tkaav TCPB_YEAST : 432- 437: slave AfAra-L rqlpt TCPB_YEAST : 434- 440: aveaf ArAlrqL ptila TCPB_YEAST : 504- 508: ssase A-Aev-L lrvdn TCPB_YEAST : 504- 509: ssase A-AevlL rvdni TCPD_MOUSE : 87- 91: qvlhp A-Arm-L velsk TCPD_YEAST : 106- 110: gallg A-Aer-L lnkgi TCPD_YEAST : 106- 111: gallg A-AerlL nkgih TCPD_YEAST : 153- 158: eqlvr A-AstsL sskiv TCPE_AVESA : 39- 44: iaaak AiAri-L rtslg TCPE_AVESA : 446- 451: qyair AfAda-L daipl TCPE_MOUSE : 450- 455: qyamr AfAda-L evipm TCPE_YEAST : 172- 177: dfllr A-AktsL gskiv TCPG_MOUSE : 417- 422: gasem AvAha-L teksk TCPG_MOUSE : 439- 444: qwpyr AvAqa-L evipr TCPG_YEAST : 74- 79: dvahp A-AksmL elsrt TCPG_YEAST : 149- 154: dvend A-AmkkL iqasi TCPH_MOUSE : 75- 79: dvvhp A-Akt-L vdiak TCPH_MOUSE : 101- 105: svtll A-Aef-L kqvkp TCPH_MOUSE : 437- 442: qllig AyAka-L eiipr TCPH_YEAST : 79- 83: dvvhp A-Akt-L vdisr TCPH_YEAST : 441- 446: qmiin AfAka-L evipr TCPQ_MOUSE : 69- 73: fvtnd A-Ati-L relev TCPQ_MOUSE : 108- 114: fvlvf AgAlleL aeell TCPQ_MOUSE : 330- 336: cktvg AtAlpkL tppvq TCPQ_MOUSE : 514- 519: klatn A-AvtvL rvdqi TCPQ_YEAST : 33- 38: iiksi A-AireL hqmcl TCPQ_YEAST : 68- 72: iitnd A-Atm-L reldi TCPQ_YEAST : 406- 411: iddgv A-AvkgL mkpsg TCPQ_YEAST : 534- 539: nvate A-AttvL sidqi TCPZ_CAEEL : 17- 22: elarh AaAle-L nisga TCPZ_CAEEL : 17- 22: elarh A-AaleL nisga TCPZ_CAEEL : 18- 22: larha A-Ale-L nisga TCPZ_CAEEL : 421- 426: aafei A-AyvmL kkdve TCPZ_CAEEL : 443- 448: klgae AfAqa-L lvipk TCPZ_CAEEL : 443- 449: klgae AfAqalL vipkt TCPZ_HUMAN : 2- 7: m A-AvktL npkae TCPZ_HUMAN : 14- 20: pkaev ArAqaaL avnis TCPZ_HUMAN : 26- 30: avnis A-Arg-L qdvlr TCPZ_HUMAN : 417- 422: gavev AmAea-L ikhkp TCPZ_HUMAN : 439- 444: qlgvq AfAda-L liipk TCPZ_HUMAN : 439- 445: qlgvq AfAdalL iipkv TCPZ_MOUSE : 2- 7: m A-AvktL npkae TCPZ_MOUSE : 14- 20: pkaev ArAqaaL avnis TCPZ_MOUSE : 26- 30: avnis A-Arg-L qdvlr TCPZ_MOUSE : 417- 422: gavev AlAea-L ikykp TCPZ_MOUSE : 439- 444: qlgvq AfAda-L liipk TCPZ_MOUSE : 439- 445: qlgvq AfAdalL iipkv TCPZ_YEAST : 184- 189: lsvyd AqAdn-L dlhmv TCPZ_YEAST : 401- 406: rdglr AvAnv-L kdkni TCPZ_YEAST : 446- 451: ktgie AfAea-L lvipk TCPZ_YEAST : 446- 452: ktgie AfAealL vipkt TF55_SULSH : 174- 180: gskav AgAreyL adlvv TF55_SULSH : 447- 453: aieay AnAiegL imila TF56_SULSH : 27- 31: rnnil A-Akt-L aemlr TF56_SULSH : 74- 78: eiqhp A-Akl-L veaak TF56_SULSH : 444- 449: qlaie AfAda-L eeipt TF56_SULSH : 517- 522: ksate A-AtaiL kiddl TF56_SULSH : 529- 533: iddli A-Aap-L ksekk R 18: 11.5102 80( 27) A-x(2,3)-L-x(0,1)-L Occurences: 80(27) TCP2_MOUSE : 59- 64: itndg Ati-LkL leveh TCP2_MOUSE : 97- 101: svvii Aae-L-L knade TCP2_MOUSE : 442- 446: aiaef Ars-L-L vipnt TCPA_ARATH : 100- 104: svviv Aae-L-L krand TCPA_ARATH : 375- 380: tktss Avs-LiL rgand TCPA_ARATH : 445- 449: aiaef Ada-L-L iipkv TCPA_CAEEL : 101- 105: svviv Aae-L-L krade TCPA_CAEEL : 445- 449: avaef Asa-L-L iipkv TCPA_CRIGR : 59- 64: itndg Ati-LkL leveh TCPA_CRIGR : 97- 101: svvii Aae-L-L knade TCPA_CRIGR : 442- 446: aiaef Ars-L-L vipnt TCPA_DROME : 62- 67: vtndg Ati-LrL leveh TCPA_DROME : 100- 104: svvil Aae-L-L knade TCPA_DROME : 445- 449: aiaef Aks-L-L vipkt TCPA_HUMAN : 59- 64: itndg Ati-LkL leveh TCPA_HUMAN : 97- 101: svvii Aae-L-L knade TCPA_HUMAN : 442- 446: aiaef Ars-L-L vipnt TCPA_RAT : 59- 64: itndg Ati-LkL leveh TCPA_RAT : 97- 101: svvii Aae-L-L knade TCPA_RAT : 442- 446: aiaef Ars-L-L vipnt TCPA_YEAST : 67- 72: vtndg Ati-LsL ldvqh TCPA_YEAST : 105- 109: svvii Ase-L-L krane TCPA_YEAST : 213- 218: ahgks AtesL-L vpgya TCPA_YEAST : 245- 251: gnvki AcldLnL qkarm TCPA_YEAST : 452- 456: aiaef Aaa-L-L iipkt TCPB_MOUSE : 106- 110: svtvl Aae-L-L reaes TCPB_MOUSE : 137- 142: eatka AreaL-L ssavd TCPB_YEAST : 504- 509: ssase AaevL-L rvdni TCPB_YEAST : 505- 509: sasea Aev-L-L rvdni TCPD_MOUSE : 113- 117: svvii Ags-L-L dsctk TCPD_MOUSE : 281- 286: lreer Ayi-LnL vkqik TCPD_MOUSE : 308- 314: silrd AlsdLaL hflnk TCPD_YEAST : 106- 111: gallg AaerL-L nkgih TCPD_YEAST : 107- 111: allga Aer-L-L nkgih TCPD_YEAST : 296- 302: silrd AvndLaL hflsk TCPE_AVESA : 71- 76: itndg Ati-LeL mdvdn TCPE_AVESA : 109- 113: gvvvm Aga-L-L eqaek TCPE_AVESA : 116- 120: alleq Aek-L-L ergih TCPE_AVESA : 306- 310: gfdde Anh-L-L mqrel TCPE_AVESA : 453- 458: adald Aip-LaL aensg TCPE_MOUSE : 113- 117: gvvvl Aga-L-L eeaeq TCPE_MOUSE : 120- 124: allee Aeq-L-L drgih TCPE_MOUSE : 310- 314: gfdde Anh-L-L lqngl TCPE_MOUSE : 310- 315: gfdde AnhlL-L qnglp TCPE_MOUSE : 310- 315: gfdde Anh-LlL qnglp TCPE_YEAST : 115- 119: gvvvl Asa-L-L dqale TCPE_YEAST : 320- 324: gfdde Anh-L-L lqndl TCPE_YEAST : 320- 325: gfdde AnhlL-L qndlp TCPE_YEAST : 320- 325: gfdde Anh-LlL qndlp TCPG_MOUSE : 371- 376: ckdpk ActiL-L rgask TCPG_MOUSE : 513- 517: tavet Avl-L-L riddi TCPG_YEAST : 75- 81: vahpa AksmLeL srtqd TCPG_YEAST : 305- 310: gvsdl AqhyL-L kggcs TCPG_YEAST : 517- 521: taies Acl-L-L rvddi TCPH_MOUSE : 63- 68: isndg Ati-LkL ldvvh TCPH_YEAST : 67- 72: isndg Ati-LkL ldvvh TCPH_YEAST : 513- 518: nsate Atn-LiL svdet TCPQ_MOUSE : 108- 112: fvlvf Aga-L-L elaee TCPQ_MOUSE : 108- 114: fvlvf AgalLeL aeell TCPQ_MOUSE : 115- 119: allel Aee-L-L rigls TCPQ_YEAST : 107- 111: lvmil Age-L-L nvsek TCPZ_CAEEL : 17- 22: elarh Aaa-LeL nisga TCPZ_CAEEL : 106- 111: ellkq Aes-LvL eglhp TCPZ_CAEEL : 445- 449: gaeaf Aqa-L-L vipkt TCPZ_CAEEL : 482- 487: agpdi Avg-LdL etgga TCPZ_CAEEL : 516- 520: satvl Acn-L-L lvdev TCPZ_CAEEL : 516- 521: satvl AcnlL-L vdevm TCPZ_CAEEL : 516- 521: satvl Acn-LlL vdevm TCPZ_HUMAN : 441- 445: gvqaf Ada-L-L iipkv TCPZ_HUMAN : 512- 517: sctvi AtniL-L vdeim TCPZ_MOUSE : 441- 445: gvqaf Ada-L-L iipkv TCPZ_MOUSE : 512- 517: sctvi AtniL-L vdeim TCPZ_YEAST : 154- 159: fllqv ArssL-L tkvda TCPZ_YEAST : 186- 191: vydaq Adn-LdL hmvei TCPZ_YEAST : 231- 236: trvkn Ayv-LiL nvsle TCPZ_YEAST : 448- 452: gieaf Aea-L-L vipkt TCPZ_YEAST : 524- 528: gatgi Asn-L-L lcdel TCPZ_YEAST : 524- 529: gatgi AsnlL-L cdell TCPZ_YEAST : 524- 529: gatgi Asn-LlL cdell TF55_SULSH : 117- 121: elakk Aed-L-L ykeih TF55_SULSH : 243- 248: krien AkiaL-L dasle TF55_SULSH : 518- 523: kaate Avt-LvL riddi TF56_SULSH : 2- 7: m AspvL-L lkegt TF56_SULSH : 2- 8: m AspvLlL kegts TF56_SULSH : 74- 78: eiqhp Aak-L-L veaak TF56_SULSH : 100- 104: savvl Aga-L-L ekaes TF56_SULSH : 107- 111: allek Aes-L-L dqnih TF56_SULSH : 131- 135: kaytk Ale-L-L pqlgt TF56_SULSH : 376- 381: aknlk AvniL-L rgsnd TF56_SULSH : 418- 423: lpggg Aie-LeL amklr S 19: 11.5102 52( 27) A-x(4)-L-x(1,3)-D Occurences: 52(27) TCP2_MOUSE : 307- 315: eagam AvrrvLkr-D lkhva TCP2_MOUSE : 520- 528: kfate AaitiLri-D dlikl TCP2_MOUSE : 520- 529: kfate AaitiLridD liklh TCPA_ARATH : 523- 531: qfate AaitiLri-D dmikl TCPA_ARATH : 523- 532: qfate AaitiLridD miklv TCPA_CAEEL : 523- 531: kfate AaitiLri-D dlikl TCPA_CAEEL : 523- 532: kfate AaitiLridD likld TCPA_CRIGR : 307- 315: eagam AvrrvLkr-D lkria TCPA_CRIGR : 520- 528: kfate AaitiLri-D dlikl TCPA_CRIGR : 520- 529: kfate AaitiLridD liklh TCPA_DROME : 141- 149: sehlt ApvdeLgr-D slini TCPA_DROME : 329- 338: katga AfitsLtnmD geesf TCPA_DROME : 523- 531: kfate AaitiLri-D dmikl TCPA_DROME : 523- 532: kfate AaitiLridD mikln TCPA_HUMAN : 307- 315: eagam AvrrvLkr-D lkria TCPA_HUMAN : 520- 528: kfate AaitiLri-D dlikl TCPA_HUMAN : 520- 529: kfate AaitiLridD liklh TCPA_RAT : 307- 315: eagam AvrrvLkr-D lkria TCPA_RAT : 520- 528: kfate AaitiLri-D dlikl TCPA_RAT : 520- 529: kfate AaitiLridD liklh TCPA_YEAST : 67- 74: vtndg AtilsLl--D vqhpa TCPA_YEAST : 534- 542: klale AcvaiLri-D tmitv TCPB_MOUSE : 510- 518: lsaae AaeviLrv-D niika TCPB_YEAST : 504- 512: ssase AaevlLrv-D niira TCPD_MOUSE : 200- 207: idpat AtsvdLr--D ikivk TCPD_YEAST : 174- 183: flapl AvdsvLkisD enskn TCPE_AVESA : 71- 78: itndg AtileLm--D vdnqi TCPE_AVESA : 71- 80: itndg AtileLmdvD nqiak TCPE_AVESA : 459- 468: iplal AensgLppiD tltvv TCPE_MOUSE : 2- 10: m AsvgtLaf-D eygrp TCPE_MOUSE : 189- 198: qmaei AvnavLtvaD merrd TCPE_YEAST : 159- 167: cddis AsndeLfr-D fllra TCPE_YEAST : 320- 328: gfdde AnhllLqn-D lpavr TCPG_MOUSE : 125- 132: tvvis AyrmaLd--D mistl TCPG_YEAST : 43- 50: clgpk AmlkmLl--D pmggl TCPG_YEAST : 124- 131: viiiq AlkkaLt--D alevi TCPH_MOUSE : 63- 70: isndg AtilkLl--D vvhpa TCPH_MOUSE : 269- 276: qaivd AewniLy--D kleki TCPH_YEAST : 67- 74: isndg AtilkLl--D vvhpa TCPH_YEAST : 513- 521: nsate AtnliLsv-D etitn TCPQ_MOUSE : 514- 522: klatn AavtvLrv-D qiima TCPQ_YEAST : 134- 143: qgynm ArkftLkelD emvvg TCPQ_YEAST : 389- 396: iilrg AtqnnLd--D ierai TCPQ_YEAST : 534- 542: nvate AattvLsi-D qiima TCPZ_CAEEL : 51- 59: mlvsg AgdikLtk-D gnvll TCPZ_CAEEL : 421- 429: aafei AayvmLkk-D venlk TCPZ_CAEEL : 516- 523: satvl AcnllLv--D evmra TCPZ_HUMAN : 51- 59: mlvsg AgdikLtk-D gnvll TCPZ_HUMAN : 512- 519: sctvi AtnilLv--D eimra TCPZ_MOUSE : 51- 59: mlvsg AgdikLtk-D gnvll TCPZ_MOUSE : 512- 519: sctvi AtnilLv--D eimra TCPZ_YEAST : 50- 58: mlvdg AgnikLtk-D gkvll TCPZ_YEAST : 154- 163: fllqv ArsslLtkvD adlte TCPZ_YEAST : 401- 408: rdglr AvanvLk--D kniip TCPZ_YEAST : 524- 531: gatgi AsnllLc--D ellra TF55_SULSH : 189- 197: vvkav AqvaeLrg-D kwyvd TF55_SULSH : 458- 467: limil AenagLdpiD klmql TF55_SULSH : 518- 526: kaate AvtlvLri-D divaa TF55_SULSH : 518- 527: kaate AvtlvLridD ivaag TF56_SULSH : 517- 525: ksate AataiLki-D dliaa TF56_SULSH : 517- 526: ksate AataiLkidD liaaa TF56_SULSH : 553- 560: ggegg AgtpsLg--D T 20: 11.5102 83( 27) E-x(0,1)-A-x(3,4)-L Occurences: 83(27) TCP2_MOUSE : 416- 423: gggav EaAlsiyL enyat TCP2_MOUSE : 440- 446: qlaia EfArsl-L vipnt TCP2_MOUSE : 519- 525: lkfat EaAiti-L riddl TCP2_MOUSE : 519- 525: lkfat E-AaitiL riddl TCPA_ARATH : 392- 399: mldem ErAlhdaL civkr TCPA_ARATH : 419- 426: gggav EsAlsvyL ehlat TCPA_ARATH : 443- 449: qlaia EfAdal-L iipkv TCPA_ARATH : 522- 528: iqfat EaAiti-L riddm TCPA_ARATH : 522- 528: iqfat E-AaitiL riddm TCPA_CAEEL : 341- 347: tlegd E-AfdasL lghad TCPA_CAEEL : 443- 449: qlava EfAsal-L iipkv TCPA_CAEEL : 522- 528: lkfat EaAiti-L riddl TCPA_CAEEL : 522- 528: lkfat E-AaitiL riddl TCPA_CRIGR : 416- 423: gggav EaAlsiyL enyat TCPA_CRIGR : 440- 446: qlaia EfArsl-L vipnt TCPA_CRIGR : 519- 525: lkfat EaAiti-L riddl TCPA_CRIGR : 519- 525: lkfat E-AaitiL riddl TCPA_DROME : 419- 426: gggcv EaAlsiyL enfat TCPA_DROME : 443- 449: qlaia EfAksl-L vipkt TCPA_DROME : 522- 528: lkfat EaAiti-L riddm TCPA_DROME : 522- 528: lkfat E-AaitiL riddm TCPA_HUMAN : 416- 423: gggav EaAlsiyL enyat TCPA_HUMAN : 440- 446: qlaia EfArsl-L vipnt TCPA_HUMAN : 519- 525: lkfat EaAiti-L riddl TCPA_HUMAN : 519- 525: lkfat E-AaitiL riddl TCPA_RAT : 416- 423: gggav EaAlsiyL enyat TCPA_RAT : 440- 446: qlaia EfArsl-L vipnt TCPA_RAT : 519- 525: lkfat EaAiti-L riddl TCPA_RAT : 519- 525: lkfat E-AaitiL riddl TCPA_YEAST : 277- 282: qirkr E-Agiv-L ervkk TCPA_YEAST : 426- 433: gggcv EaAlniyL dnfat TCPA_YEAST : 450- 456: qlaia EfAaal-L iipkt TCPA_YEAST : 533- 539: lklal E-AcvaiL ridtm TCPB_MOUSE : 19- 26: agade ErAeiarL ssfig TCPB_MOUSE : 185- 190: tklav E-Aglr-L kgsgn TCPB_MOUSE : 369- 375: gvalg E-ActivL rgatq TCPB_MOUSE : 385- 390: qqild E-Aers-L hdalc TCPB_MOUSE : 509- 515: llsaa EaAevi-L rvdni TCPB_MOUSE : 509- 515: llsaa E-AaeviL rvdni TCPB_YEAST : 13- 20: dqvte ErAenarL safvg TCPB_YEAST : 175- 182: kdhfa ElAtnaiL rlkgs TCPB_YEAST : 363- 369: gckag E-ActivL rgatd TCPB_YEAST : 379- 384: dqtld E-Aers-L hdals TCPB_YEAST : 431- 437: kslav E-AfaraL rqlpt TCPB_YEAST : 503- 508: vssas E-Aaev-L lrvdn TCPB_YEAST : 503- 509: vssas EaAevl-L rvdni TCPB_YEAST : 503- 509: vssas E-AaevlL rvdni TCPD_MOUSE : 242- 248: gitrv EkAkig-L iqfcl TCPD_MOUSE : 279- 286: rvlre ErAyilnL vkqik TCPD_MOUSE : 360- 367: mlgsa ElAeevsL ngsgk TCPD_YEAST : 230- 236: gptrk EkAkig-L iqfqi TCPE_AVESA : 114- 120: agall EqAekl-L ergih TCPE_AVESA : 305- 310: wgfdd E-Anhl-L mqrel TCPE_MOUSE : 118- 124: agall EeAeql-L drgih TCPE_MOUSE : 119- 124: galle E-Aeql-L drgih TCPE_MOUSE : 187- 194: hrqma EiAvnavL tvadm TCPE_MOUSE : 309- 314: wgfdd E-Anhl-L lqngl TCPE_MOUSE : 309- 315: wgfdd E-AnhllL qnglp TCPE_MOUSE : 396- 402: nkmii EeAkrs-L hdalc TCPE_MOUSE : 397- 402: kmiie E-Akrs-L hdalc TCPE_YEAST : 319- 324: wgfdd E-Anhl-L lqndl TCPE_YEAST : 319- 325: wgfdd E-AnhllL qndlp TCPE_YEAST : 407- 412: kmivd E-Aera-L hdslc TCPE_YEAST : 409- 416: ivdea ErAlhdsL cvvrn TCPG_MOUSE : 415- 422: gggas EmAvahaL teksk TCPG_MOUSE : 511- 517: yktav EtAvll-L riddi TCPG_YEAST : 420- 427: gggat EmAvsvkL aekak TCPG_YEAST : 515- 521: vktai EsAcll-L rvddi TCPH_MOUSE : 34- 40: cqvia E-AvrttL gprgm TCPH_YEAST : 38- 44: cvavq E-AlkptL gplgs TCPH_YEAST : 111- 116: gelmk E-Akpf-L eegis TCPH_YEAST : 512- 518: lnsat E-AtnliL svdet TCPQ_MOUSE : 113- 119: agall ElAeel-L rigls TCPQ_MOUSE : 446- 452: faeaf E-AipraL aensg TCPQ_YEAST : 184- 190: selvs E-AvshvL pvaqq TCPQ_YEAST : 307- 313: gagvg ElAlhy-L nrygi TCPQ_YEAST : 533- 539: invat EaAttv-L sidqi TCPQ_YEAST : 533- 539: invat E-AattvL sidqi TCPZ_CAEEL : 124- 131: vtegf EwAntktL ellek TCPZ_CAEEL : 419- 426: gaaaf EiAayvmL kkdve TCPZ_CAEEL : 442- 448: aklga E-AfaqaL lvipk TCPZ_HUMAN : 124- 131: itegf EaAkekaL qflee TCPZ_HUMAN : 128- 134: feaak EkAlqf-L eevkv TCPZ_HUMAN : 415- 422: gagav EvAmaeaL ikhkp TCPZ_MOUSE : 124- 131: itegf EaAkekaL qfleq TCPZ_MOUSE : 128- 134: feaak EkAlqf-L eqvkv TCPZ_MOUSE : 415- 422: gagav EvAlaeaL ikykp TCPZ_YEAST : 445- 451: tktgi E-AfaeaL lvipk TF55_SULSH : 241- 247: mpkri EnAkia-L ldasl TF55_SULSH : 241- 248: mpkri EnAkialL dasle TF55_SULSH : 305- 311: qkgid EvAqhy-L akkgi TF55_SULSH : 394- 401: vvdet ErAlrdaL gtvad TF55_SULSH : 517- 523: ikaat E-AvtlvL riddi TF56_SULSH : 105- 111: agall EkAesl-L dqnih TF56_SULSH : 443- 449: eqlai E-AfadaL eeipt TF56_SULSH : 463- 468: etagl E-Aisa-L mdlra TF56_SULSH : 516- 522: lksat EaAtai-L kiddl TF56_SULSH : 516- 522: lksat E-AataiL kiddl Number of patterns evaluated by Pratt:10806 Total running time: 29 seconds