------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 19 sequences from file T2SP_E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 19 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename T2SP_E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CMG1_BACSU 356 GSPE_AERHY 501 GSPE_ECOLI 493 GSPE_ERWCA 498 GSPE_ERWCH 498 GSPE_KLEPN 497 GSPE_PSEAE 502 GSPE_VIBCH 503 GSPE_XANCP 531 HOFB_ECOLI 461 HOFB_HAEIN 464 PILB_PSEAE 566 PILF_NEIGO 558 PILT_PSEAE 344 TAPB_AERHY 568 TCPT_VIBCH 503 VIBY_AGRT5 344 VIBY_AGRT9 343 YGCB_ECOLI 335 Pratt run started at Thu Feb 6 21:21:20 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 19( 19) T-x-S-G-K 2: 15.1802 24( 19) L-x(1,3)-G-x(2,3)-S-x-K 3: 15.1802 21( 19) L-x(2,3)-G-x(1,3)-S-x-K 4: 12.5102 19( 19) S-G-K 5: 12.0102 23( 19) G-x(2,3)-S-x-K 6: 12.0102 25( 19) R-x(2,3)-D-x(5)-E 7: 12.0102 31( 19) L-x(0,1)-T-x(4)-S 8: 12.0102 43( 19) L-x-A-x(0,1)-L 9: 11.5102 47( 19) A-x(2)-L-x(2,4)-L 10: 11.5102 42( 19) A-x(3,4)-L-x(3,4)-L 11: 11.5102 54( 19) L-x(2,3)-A-x(1,2)-L 12: 11.5102 69( 19) L-x(1,2)-A-x(1,2)-L 13: 11.5102 42( 19) A-x(0,1)-L-x(2,3)-A 14: 11.5102 48( 19) A-x(0,1)-L-x(1,2)-A 15: 11.5102 24( 19) G-x(0,1)-K-x(3,4)-L 16: 11.5102 40( 19) T-G-x(1,3)-G 17: 11.5102 24( 19) P-x(1,2)-G-x(2,3)-K 18: 11.5102 20( 19) P-x(2,4)-S-x-K 19: 11.5102 20( 19) P-x(0,2)-S-x-K 20: 11.5102 26( 19) P-x(3,4)-G-x(0,1)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 29.7944 20( 19) R-x(2,3)-D-x(3)-[ILV]-[GL]-E-[ILM]-[RS]-[DG]-x(2)-[AST] B 2: 23.0257 19( 19) T-[AG]-S-G-K-[ST] C 3: 22.2981 19( 19) P-x(2,4)-S-[CG]-K-[STV]-x(4)-[AEST]-x(4)-[AIL] D 4: 22.2981 19( 19) P-x(0,2)-S-[CG]-K-[STV]-x(4)-[AEST]-x(4)-[AIL] E 5: 20.3876 19( 19) P-x(3,4)-G-x(0,1)-K-[NSTV]-x(4)-[ASTV]-x-[AILV]-x(2)-[AILP] F 6: 15.6856 19( 19) S-G-K-[ST] G 7: 15.1802 24( 19) L-x(1,3)-G-x(2,3)-S-x-K H 8: 15.1802 21( 19) L-x(2,3)-G-x(1,3)-S-x-K I 9: 14.7105 29( 19) T-G-x(1,3)-G-x-[GT] J 10: 13.6594 28( 19) L-x(0,1)-T-[AGILPV]-x(3)-S K 11: 13.4103 20( 19) P-x(1,2)-G-x(2,3)-K-[CNSTV] L 12: 12.0102 23( 19) G-x(2,3)-S-x-K M 13: 12.0102 43( 19) L-x-A-x(0,1)-L N 14: 11.5102 47( 19) A-x(2)-L-x(2,4)-L O 15: 11.5102 42( 19) A-x(3,4)-L-x(3,4)-L P 16: 11.5102 54( 19) L-x(2,3)-A-x(1,2)-L Q 17: 11.5102 69( 19) L-x(1,2)-A-x(1,2)-L R 18: 11.5102 42( 19) A-x(0,1)-L-x(2,3)-A S 19: 11.5102 48( 19) A-x(0,1)-L-x(1,2)-A T 20: 11.5102 24( 19) G-x(0,1)-K-x(3,4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 29.7944 20( 19) R-x(2,3)-D-x(3)-[ILV]-[GL]-E-[ILM]-[RS]-[DG]-x(2)-[AST] Occurences: 20(19) CMG1_BACSU : 205- 221: lkail RhdpDmiiLGEIRDaeT aeiav GSPE_AERHY : 322- 338: lrail RqdpDvvmVGEIRDleT aqiav GSPE_ECOLI : 309- 325: lrail RqdpDvvmVGEIRDteT aqiav GSPE_ERWCA : 321- 337: lrail RqdpDvvlVGEIRDgeT aqiav GSPE_ERWCH : 321- 337: lrail RqdpDvvlVGEIRDgeT aqiav GSPE_KLEPN : 315- 331: lrail RqdpDvvlVGEIRDgeT aqiav GSPE_PSEAE : 323- 339: lrail RqdpDvvmVGEIRDreT aeiav GSPE_VIBCH : 324- 340: lrail RqdpDvvmVGEIRDleT aqiav GSPE_XANCP : 349- 365: lrsiv RqdpDiimIGEMRDleT ariai HOFB_ECOLI : 282- 298: lrall RqdpDvimIGEIRDgeT aeiai HOFB_HAEIN : 324- 340: lrtfl RqdpDiimLGEIRDeeS amial PILB_PSEAE : 386- 402: lrafl RqdpDvimVGEIRDleT aeiai PILF_NEIGO : 375- 391: lksfl RqdpDiimVGEIRDleT adiai PILT_PSEAE : 194- 210: lrsal RedpDiilVGEMRDleT irlal TAPB_AERHY : 387- 403: lrsfl RqdpDvvmVGEIRDleT aeiai TCPT_VIBCH : 304- 320: vrsam RrdpDvimIGEIRDkpT veals TCPT_VIBCH : 305- 320: rsamr Rdp-DvimIGEIRDkpT veals VIBY_AGRT5 : 234- 250: lqasl RmrpDrilLGEIRDdaA wayls VIBY_AGRT9 : 234- 250: lqasl RmrpDrilLGEMRDdaA wayls YGCB_ECOLI : 260- 275: tyfqd Rqq-DasrVLELSGlvS nkrcy B 2: 23.0257 19( 19) T-[AG]-S-G-K-[ST] Occurences: 19(19) CMG1_BACSU : 146- 151: iftgp TGSGKT ttlys GSPE_AERHY : 264- 269: lvtgp TGSGKS ttlya GSPE_ECOLI : 251- 256: lvtgp TGSGKS ttlya GSPE_ERWCA : 263- 268: lvtgp TGSGKS ttlya GSPE_ERWCH : 263- 268: lvtgp TASGKS ttlya GSPE_KLEPN : 257- 262: lvtgp TGSGKS ttlya GSPE_PSEAE : 265- 270: lvtgp TGSGKT ttlya GSPE_VIBCH : 266- 271: lvtgp TGSGKS ttlya GSPE_XANCP : 291- 296: lvtgp TGSGKT ttlyt HOFB_ECOLI : 224- 229: lvtgp TGSGKT vtlys HOFB_HAEIN : 266- 271: lvtgp TGSGKS islyt PILB_PSEAE : 328- 333: lvtgp TGSGKT vslyt PILF_NEIGO : 317- 322: lvtgp TGSGKT vslyt PILT_PSEAE : 132- 137: lvtgp TGSGKS ttlaa TAPB_AERHY : 329- 334: lvtgp TGSGKT vslyt TCPT_VIBCH : 238- 243: ivsgt TGSGKS tslkk VIBY_AGRT5 : 171- 176: llcgp TGSGKT tmskt VIBY_AGRT9 : 171- 176: llcgp TGSGKT tmskt YGCB_ECOLI : 316- 321: vieap TGSGKT etala C 3: 22.2981 19( 19) P-x(2,4)-S-[CG]-K-[STV]-x(4)-[AEST]-x(4)-[AIL] Occurences: 19(19) CMG1_BACSU : 145- 161: liftg Ptg--SGKTttlySlvqyA kkhfn GSPE_AERHY : 263- 279: ilvtg Ptg--SGKSttlyAalseI nsrdr GSPE_ECOLI : 250- 266: ilvtg Ptg--SGKSttlyAilsaL ntpgr GSPE_ERWCA : 262- 278: ilvtg Ptg--SGKSttlyAalsrL naser GSPE_ERWCH : 262- 278: ilvtg Pta--SGKSttlyAalspL nsaer GSPE_KLEPN : 256- 272: vlvtg Ptg--SGKSttlyAalsrL darer GSPE_PSEAE : 264- 280: llvtg Ptg--SGKTttlyAslttL ndrtr GSPE_VIBCH : 265- 281: ilvtg Ptg--SGKSttlyAglqeL nsser GSPE_XANCP : 290- 306: mlvtg Ptg--SGKTttlyTalsqL ntsdv HOFB_ECOLI : 223- 239: vlvtg Ptg--SGKTvtlySalqkL ntadi HOFB_HAEIN : 265- 281: ilvtg Ptg--SGKSislyTalqwL ntpdk PILB_PSEAE : 327- 343: ilvtg Ptg--SGKTvslyTglniL nttdi PILF_NEIGO : 316- 332: vlvtg Ptg--SGKTvslyTclniL ntesv PILT_PSEAE : 131- 147: vlvtg Ptg--SGKSttlaAmldyL nntky TAPB_AERHY : 328- 344: ilvtg Ptg--SGKTvslyTglniL nttev TCPT_VIBCH : 376- 394: sqkli PelcpSCKVsfvdEryqrA vfsan VIBY_AGRT5 : 170- 186: mllcg Ptg--SGKTtmskTlinaI ppqer VIBY_AGRT9 : 170- 186: mllcg Ptg--SGKTtmskTlisaI ppqer YGCB_ECOLI : 315- 331: tviea Ptg--SGKTetalAyawkL idpl D 4: 22.2981 19( 19) P-x(0,2)-S-[CG]-K-[STV]-x(4)-[AEST]-x(4)-[AIL] Occurences: 19(19) CMG1_BACSU : 145- 161: liftg PtgSGKTttlySlvqyA kkhfn GSPE_AERHY : 263- 279: ilvtg PtgSGKSttlyAalseI nsrdr GSPE_ECOLI : 250- 266: ilvtg PtgSGKSttlyAilsaL ntpgr GSPE_ERWCA : 262- 278: ilvtg PtgSGKSttlyAalsrL naser GSPE_ERWCH : 262- 278: ilvtg PtaSGKSttlyAalspL nsaer GSPE_KLEPN : 256- 272: vlvtg PtgSGKSttlyAalsrL darer GSPE_PSEAE : 264- 280: llvtg PtgSGKTttlyAslttL ndrtr GSPE_VIBCH : 265- 281: ilvtg PtgSGKSttlyAglqeL nsser GSPE_XANCP : 290- 306: mlvtg PtgSGKTttlyTalsqL ntsdv HOFB_ECOLI : 223- 239: vlvtg PtgSGKTvtlySalqkL ntadi HOFB_HAEIN : 265- 281: ilvtg PtgSGKSislyTalqwL ntpdk PILB_PSEAE : 327- 343: ilvtg PtgSGKTvslyTglniL nttdi PILF_NEIGO : 316- 332: vlvtg PtgSGKTvslyTclniL ntesv PILT_PSEAE : 131- 147: vlvtg PtgSGKSttlaAmldyL nntky TAPB_AERHY : 328- 344: ilvtg PtgSGKTvslyTglniL nttev TCPT_VIBCH : 380- 394: ipelc P--SCKVsfvdEryqrA vfsan VIBY_AGRT5 : 170- 186: mllcg PtgSGKTtmskTlinaI ppqer VIBY_AGRT9 : 170- 186: mllcg PtgSGKTtmskTlisaI ppqer YGCB_ECOLI : 315- 331: tviea PtgSGKTetalAyawkL idpl E 5: 20.3876 19( 19) P-x(3,4)-G-x(0,1)-K-[NSTV]-x(4)-[ASTV]-x-[AILV]-x(2)-[AILP] Occurences: 19(19) CMG1_BACSU : 145- 161: liftg Ptgs-G-KTttlySlVqyA kkhfn GSPE_AERHY : 263- 279: ilvtg Ptgs-G-KSttlyAaLseI nsrdr GSPE_ECOLI : 250- 266: ilvtg Ptgs-G-KSttlyAiLsaL ntpgr GSPE_ERWCA : 262- 278: ilvtg Ptgs-G-KSttlyAaLsrL naser GSPE_ERWCH : 262- 278: ilvtg Ptas-G-KSttlyAaLspL nsaer GSPE_KLEPN : 256- 272: vlvtg Ptgs-G-KSttlyAaLsrL darer GSPE_PSEAE : 264- 280: llvtg Ptgs-G-KTttlyAsLttL ndrtr GSPE_VIBCH : 265- 281: ilvtg Ptgs-G-KSttlyAgLqeL nsser GSPE_XANCP : 290- 306: mlvtg Ptgs-G-KTttlyTaLsqL ntsdv HOFB_ECOLI : 223- 239: vlvtg Ptgs-G-KTvtlySaLqkL ntadi HOFB_HAEIN : 265- 281: ilvtg Ptgs-G-KSislyTaLqwL ntpdk PILB_PSEAE : 327- 343: ilvtg Ptgs-G-KTvslyTgLniL nttdi PILF_NEIGO : 316- 332: vlvtg Ptgs-G-KTvslyTcLniL ntesv PILT_PSEAE : 131- 147: vlvtg Ptgs-G-KSttlaAmLdyL nntky TAPB_AERHY : 328- 344: ilvtg Ptgs-G-KTvslyTgLniL nttev TCPT_VIBCH : 181- 199: ryahm PlfgeGgKNyhavVrIiyP snnfv VIBY_AGRT5 : 170- 186: mllcg Ptgs-G-KTtmskTlInaI ppqer VIBY_AGRT9 : 170- 186: mllcg Ptgs-G-KTtmskTlIsaI ppqer YGCB_ECOLI : 315- 331: tviea Ptgs-G-KTetalAyAwkL idpl F 6: 15.6856 19( 19) S-G-K-[ST] Occurences: 19(19) CMG1_BACSU : 148- 151: tgptg SGKT ttlys GSPE_AERHY : 266- 269: tgptg SGKS ttlya GSPE_ECOLI : 253- 256: tgptg SGKS ttlya GSPE_ERWCA : 265- 268: tgptg SGKS ttlya GSPE_ERWCH : 265- 268: tgpta SGKS ttlya GSPE_KLEPN : 259- 262: tgptg SGKS ttlya GSPE_PSEAE : 267- 270: tgptg SGKT ttlya GSPE_VIBCH : 268- 271: tgptg SGKS ttlya GSPE_XANCP : 293- 296: tgptg SGKT ttlyt HOFB_ECOLI : 226- 229: tgptg SGKT vtlys HOFB_HAEIN : 268- 271: tgptg SGKS islyt PILB_PSEAE : 330- 333: tgptg SGKT vslyt PILF_NEIGO : 319- 322: tgptg SGKT vslyt PILT_PSEAE : 134- 137: tgptg SGKS ttlaa TAPB_AERHY : 331- 334: tgptg SGKT vslyt TCPT_VIBCH : 240- 243: sgttg SGKS tslkk VIBY_AGRT5 : 173- 176: cgptg SGKT tmskt VIBY_AGRT9 : 173- 176: cgptg SGKT tmskt YGCB_ECOLI : 318- 321: eaptg SGKT etala G 7: 15.1802 24( 19) L-x(1,3)-G-x(2,3)-S-x-K Occurences: 24(19) CMG1_BACSU : 140- 150: hshgm LiftGptgSgK tttly GSPE_AERHY : 259- 268: phgii Lvt-GptgSgK sttly GSPE_ECOLI : 246- 255: phgii Lvt-GptgSgK sttly GSPE_ERWCA : 258- 267: phgii Lvt-GptgSgK sttly GSPE_ERWCH : 258- 267: phgii Lvt-GptaSgK sttly GSPE_KLEPN : 252- 261: phgiv Lvt-GptgSgK sttly GSPE_PSEAE : 259- 269: kphgi LlvtGptgSgK tttly GSPE_PSEAE : 260- 269: phgil Lvt-GptgSgK tttly GSPE_VIBCH : 261- 270: phgii Lvt-GptgSgK sttly GSPE_XANCP : 286- 295: phgim Lvt-GptgSgK tttly HOFB_ECOLI : 219- 228: pqglv Lvt-GptgSgK tvtly HOFB_HAEIN : 261- 270: pqgli Lvt-GptgSgK sisly PILB_PSEAE : 323- 332: pqgmi Lvt-GptgSgK tvsly PILF_NEIGO : 37- 46: evlpm LfsdGvi-SpK slaal PILF_NEIGO : 312- 321: pygmv Lvt-GptgSgK tvsly PILT_PSEAE : 127- 136: prglv Lvt-GptgSgK sttla TAPB_AERHY : 324- 333: pqgmi Lvt-GptgSgK tvsly TCPT_VIBCH : 366- 373: aspgf La--Git-SqK lipel VIBY_AGRT5 : 166- 175: grltm Llc-GptgSgK ttmsk VIBY_AGRT5 : 167- 175: rltml Lc--GptgSgK ttmsk VIBY_AGRT9 : 166- 175: srltm Llc-GptgSgK ttmsk VIBY_AGRT9 : 167- 175: rltml Lc--GptgSgK ttmsk YGCB_ECOLI : 268- 277: dasrv LelsGlv-SnK rcyeg YGCB_ECOLI : 270- 277: srvle Ls--Glv-SnK rcyeg H 8: 15.1802 21( 19) L-x(2,3)-G-x(1,3)-S-x-K Occurences: 21(19) CMG1_BACSU : 140- 150: hshgm LiftGptgSgK tttly GSPE_AERHY : 259- 268: phgii Lvt-GptgSgK sttly GSPE_ECOLI : 246- 255: phgii Lvt-GptgSgK sttly GSPE_ERWCA : 258- 267: phgii Lvt-GptgSgK sttly GSPE_ERWCH : 258- 267: phgii Lvt-GptaSgK sttly GSPE_KLEPN : 252- 261: phgiv Lvt-GptgSgK sttly GSPE_PSEAE : 259- 269: kphgi LlvtGptgSgK tttly GSPE_PSEAE : 260- 269: phgil Lvt-GptgSgK tttly GSPE_VIBCH : 261- 270: phgii Lvt-GptgSgK sttly GSPE_XANCP : 286- 295: phgim Lvt-GptgSgK tttly HOFB_ECOLI : 219- 228: pqglv Lvt-GptgSgK tvtly HOFB_HAEIN : 261- 270: pqgli Lvt-GptgSgK sisly PILB_PSEAE : 323- 332: pqgmi Lvt-GptgSgK tvsly PILF_NEIGO : 37- 46: evlpm LfsdGvi-SpK slaal PILF_NEIGO : 312- 321: pygmv Lvt-GptgSgK tvsly PILT_PSEAE : 127- 136: prglv Lvt-GptgSgK sttla TAPB_AERHY : 324- 333: pqgmi Lvt-GptgSgK tvsly TCPT_VIBCH : 456- 463: tgkkg Lge-Gf--SiK dkayy VIBY_AGRT5 : 166- 175: grltm Llc-GptgSgK ttmsk VIBY_AGRT9 : 166- 175: srltm Llc-GptgSgK ttmsk YGCB_ECOLI : 268- 277: dasrv LelsGlv-SnK rcyeg I 9: 14.7105 29( 19) T-G-x(1,3)-G-x-[GT] Occurences: 29(19) CMG1_BACSU : 143- 149: gmlif TGpt-GsG ktttl CMG1_BACSU : 146- 151: iftgp TGs--GkT ttlys GSPE_AERHY : 261- 267: giilv TGpt-GsG ksttl GSPE_AERHY : 434- 440: eqcnh TGyr-GrT gihel GSPE_ECOLI : 248- 254: giilv TGpt-GsG ksttl GSPE_ERWCA : 260- 266: giilv TGpt-GsG ksttl GSPE_ERWCH : 411- 418: eqaeq TGlaaGtT lyhpg GSPE_KLEPN : 254- 260: givlv TGpt-GsG ksttl GSPE_KLEPN : 425- 431: aecgf TGyr-GrT gihel GSPE_PSEAE : 262- 268: gillv TGpt-GsG ktttl GSPE_PSEAE : 265- 270: lvtgp TGs--GkT ttlya GSPE_VIBCH : 263- 269: giilv TGpt-GsG ksttl GSPE_XANCP : 288- 294: gimlv TGpt-GsG ktttl GSPE_XANCP : 291- 296: lvtgp TGs--GkT ttlyt GSPE_XANCP : 463- 469: taaap TGyl-GrT tivef HOFB_ECOLI : 221- 227: glvlv TGpt-GsG ktvtl HOFB_ECOLI : 224- 229: lvtgp TGs--GkT vtlys HOFB_HAEIN : 263- 269: glilv TGpt-GsG ksisl PILB_PSEAE : 325- 331: gmilv TGpt-GsG ktvsl PILB_PSEAE : 328- 333: lvtgp TGs--GkT vslyt PILF_NEIGO : 314- 320: gmvlv TGpt-GsG ktvsl PILF_NEIGO : 317- 322: lvtgp TGs--GkT vslyt PILT_PSEAE : 129- 135: glvlv TGpt-GsG ksttl TAPB_AERHY : 326- 332: gmilv TGpt-GsG ktvsl TAPB_AERHY : 329- 334: lvtgp TGs--GkT vslyt TCPT_VIBCH : 451- 457: rrfik TGkk-GlG egfsi VIBY_AGRT5 : 171- 176: llcgp TGs--GkT tmskt VIBY_AGRT9 : 171- 176: llcgp TGs--GkT tmskt YGCB_ECOLI : 316- 321: vieap TGs--GkT etala J 10: 13.6594 28( 19) L-x(0,1)-T-[AGILPV]-x(3)-S Occurences: 28(19) CMG1_BACSU : 95- 102: lrmst LpTIneeS lvirv GSPE_AERHY : 259- 266: phgii LvTGptgS gkstt GSPE_ECOLI : 246- 253: phgii LvTGptgS gkstt GSPE_ECOLI : 340- 347: tghlv LsTLhtnS asgav GSPE_ERWCA : 258- 265: phgii LvTGptgS gkstt GSPE_ERWCA : 352- 359: tghlv LsTLhtnS algal GSPE_ERWCH : 60- 66: vagva L-TVsqvS peefe GSPE_ERWCH : 258- 265: phgii LvTGptaS gkstt GSPE_ERWCH : 352- 359: tghlv LsTLhtnS algal GSPE_KLEPN : 252- 259: phgiv LvTGptgS gkstt GSPE_KLEPN : 346- 353: tghlv LsTLhtnS algai GSPE_PSEAE : 260- 267: phgil LvTGptgS gkttt GSPE_PSEAE : 354- 361: tghlv LsTLhtnS aigai GSPE_VIBCH : 261- 268: phgii LvTGptgS gkstt GSPE_XANCP : 196- 202: sppak L-TAaviS rikim GSPE_XANCP : 286- 293: phgim LvTGptgS gkttt HOFB_ECOLI : 219- 226: pqglv LvTGptgS gktvt HOFB_ECOLI : 313- 320: tghlv LsTLhtnS tcetl HOFB_HAEIN : 261- 268: pqgli LvTGptgS gksis PILB_PSEAE : 323- 330: pqgmi LvTGptgS gktvs PILF_NEIGO : 312- 319: pygmv LvTGptgS gktvs PILT_PSEAE : 127- 134: prglv LvTGptgS gkstt TAPB_AERHY : 324- 331: pqgmi LvTGptgS gktvs TAPB_AERHY : 418- 425: tghlv LsTLhtnS aaetl TCPT_VIBCH : 335- 342: sghyc LtTIhagS vvsvl VIBY_AGRT5 : 101- 107: sgtvs L-TIrrpS srvss VIBY_AGRT9 : 101- 107: sgtvs L-TIrrpS srvsg YGCB_ECOLI : 203- 209: lealf L-TPaglS indip K 11: 13.4103 20( 19) P-x(1,2)-G-x(2,3)-K-[CNSTV] Occurences: 20(19) CMG1_BACSU : 145- 151: liftg Pt-Gsg-KT ttlys GSPE_AERHY : 263- 269: ilvtg Pt-Gsg-KS ttlya GSPE_ECOLI : 250- 256: ilvtg Pt-Gsg-KS ttlya GSPE_ERWCA : 262- 268: ilvtg Pt-Gsg-KS ttlya GSPE_ERWCH : 422- 428: ttlyh Pg-Gce-KC nysgy GSPE_KLEPN : 256- 262: vlvtg Pt-Gsg-KS ttlya GSPE_PSEAE : 264- 270: llvtg Pt-Gsg-KT ttlya GSPE_VIBCH : 265- 271: ilvtg Pt-Gsg-KS ttlya GSPE_XANCP : 290- 296: mlvtg Pt-Gsg-KT ttlyt HOFB_ECOLI : 173- 180: riatl PcrGge-KV vlrll HOFB_ECOLI : 223- 229: vlvtg Pt-Gsg-KT vtlys HOFB_HAEIN : 265- 271: ilvtg Pt-Gsg-KS islyt PILB_PSEAE : 327- 333: ilvtg Pt-Gsg-KT vslyt PILF_NEIGO : 316- 322: vlvtg Pt-Gsg-KT vslyt PILT_PSEAE : 131- 137: vlvtg Pt-Gsg-KS ttlaa TAPB_AERHY : 328- 334: ilvtg Pt-Gsg-KT vslyt TCPT_VIBCH : 181- 189: ryahm PlfGeggKN yhavv VIBY_AGRT5 : 170- 176: mllcg Pt-Gsg-KT tmskt VIBY_AGRT9 : 170- 176: mllcg Pt-Gsg-KT tmskt YGCB_ECOLI : 315- 321: tviea Pt-Gsg-KT etala L 12: 12.0102 23( 19) G-x(2,3)-S-x-K Occurences: 23(19) CMG1_BACSU : 144- 150: mlift GptgSgK tttly GSPE_AERHY : 262- 268: iilvt GptgSgK sttly GSPE_ECOLI : 249- 255: iilvt GptgSgK sttly GSPE_ERWCA : 261- 267: iilvt GptgSgK sttly GSPE_ERWCH : 261- 267: iilvt GptaSgK sttly GSPE_KLEPN : 255- 261: ivlvt GptgSgK sttly GSPE_PSEAE : 263- 269: illvt GptgSgK tttly GSPE_VIBCH : 264- 270: iilvt GptgSgK sttly GSPE_XANCP : 289- 295: imlvt GptgSgK tttly HOFB_ECOLI : 222- 228: lvlvt GptgSgK tvtly HOFB_HAEIN : 264- 270: lilvt GptgSgK sisly PILB_PSEAE : 326- 332: milvt GptgSgK tvsly PILF_NEIGO : 41- 46: mlfsd Gvi-SpK slaal PILF_NEIGO : 315- 321: mvlvt GptgSgK tvsly PILT_PSEAE : 130- 136: lvlvt GptgSgK sttla TAPB_AERHY : 327- 333: milvt GptgSgK tvsly TCPT_VIBCH : 236- 242: lfivs GttgSgK stslk TCPT_VIBCH : 241- 247: gttgs GkstSlK kyiel TCPT_VIBCH : 368- 373: pgfla Git-SqK lipel TCPT_VIBCH : 457- 463: gkkgl GegfSiK dkayy VIBY_AGRT5 : 169- 175: tmllc GptgSgK ttmsk VIBY_AGRT9 : 169- 175: tmllc GptgSgK ttmsk YGCB_ECOLI : 272- 277: vlels Glv-SnK rcyeg M 13: 12.0102 43( 19) L-x-A-x(0,1)-L Occurences: 43(19) CMG1_BACSU : 200- 204: tysag LkAiL rhdpd GSPE_AERHY : 11- 15: lddts LpAaL pelpf GSPE_AERHY : 272- 276: gkstt LyAaL seins GSPE_AERHY : 317- 321: tfarg LrAiL rqdpd GSPE_AERHY : 382- 386: llsss LlAvL aqrlv GSPE_ECOLI : 156- 159: qpnkk LaA-L lisri GSPE_ECOLI : 156- 160: qpnkk LaAlL isrik GSPE_ECOLI : 259- 263: gkstt LyAiL salnt GSPE_ECOLI : 263- 266: tlyai LsA-L ntpgr GSPE_ECOLI : 304- 308: sfarg LrAiL rqdpd GSPE_ERWCA : 271- 275: gkstt LyAaL srlna GSPE_ERWCA : 316- 320: tfarg LrAiL rqdpd GSPE_ERWCA : 361- 364: htnsa LgA-L srlqd GSPE_ERWCH : 271- 275: gkstt LyAaL splns GSPE_ERWCH : 316- 320: tfarg LrAiL rqdpd GSPE_ERWCH : 361- 364: htnsa LgA-L srlqd GSPE_KLEPN : 162- 165: rpqrr LaA-L lisri GSPE_KLEPN : 162- 166: rpqrr LaAlL isrik GSPE_KLEPN : 265- 269: gkstt LyAaL srlda GSPE_KLEPN : 310- 314: tfarg LrAiL rqdpd GSPE_PSEAE : 64- 67: grrlp LkA-L gedaf GSPE_PSEAE : 100- 103: ggsld LaA-L adqvp GSPE_PSEAE : 170- 173: epkre LaA-L lvsri GSPE_PSEAE : 170- 174: epkre LaAlL vsrik GSPE_PSEAE : 273- 277: gkttt LyAsL ttlnd GSPE_PSEAE : 318- 322: tfarg LrAiL rqdpd GSPE_VIBCH : 274- 278: gkstt LyAgL qelns GSPE_VIBCH : 319- 323: tfarg LrAiL rqdpd GSPE_XANCP : 3- 6: mg LlA-L lgrlg GSPE_XANCP : 3- 7: mg LlAlL grlgl HOFB_ECOLI : 38- 41: pslel LdA-L hfatt HOFB_ECOLI : 133- 137: dagva LtArL kvlgn HOFB_ECOLI : 277- 280: tfqgv LrA-L lrqdp HOFB_ECOLI : 277- 281: tfqgv LrAlL rqdpd HOFB_HAEIN : 180- 184: isrlk LlAkL disen PILB_PSEAE : 312- 315: qkely LaA-L kqpqg PILB_PSEAE : 381- 385: dfsqa LrAfL rqdpd PILF_NEIGO : 48- 51: ispks LaA-L iarvf PILT_PSEAE : 20- 24: asdlh LsAgL ppmir PILT_PSEAE : 140- 144: gkstt LaAmL dylnn TAPB_AERHY : 313- 316: qkaqy LrA-L skpqg TAPB_AERHY : 484- 488: ftqqq LaAgL rlfkp TCPT_VIBCH : 70- 74: anhkl LiAnL vteqq VIBY_AGRT5 : 151- 155: ydngd LeAfL hacvv VIBY_AGRT5 : 229- 233: taehl LqAsL rmrpd VIBY_AGRT9 : 151- 155: fdngd LeAfL hacvv VIBY_AGRT9 : 229- 233: saehl LqAsL rmrpd YGCB_ECOLI : 198- 201: ewisv LeA-L fltpa N 14: 11.5102 47( 19) A-x(2)-L-x(2,4)-L Occurences: 47(19) CMG1_BACSU : 127- 133: fpktg AtlLsf--L khshg CMG1_BACSU : 270- 276: viaia AqrLvd--L acpfc GSPE_AERHY : 3- 11: ma AyqLddtsL paalp GSPE_AERHY : 86- 93: rdsse ArqLmed-L gnemd GSPE_AERHY : 314- 321: vdmtf ArgLrai-L rqdpd GSPE_AERHY : 387- 394: llavl AqrLvrt-L cpdcr GSPE_ECOLI : 301- 308: vdmsf ArgLrai-L rqdpd GSPE_ECOLI : 374- 381: lagii AqrLvrr-L cpqcr GSPE_ERWCA : 313- 320: vdmtf ArgLrai-L rqdpd GSPE_ERWCA : 386- 393: llgvl AqrLvrt-L csdcs GSPE_ERWCH : 313- 320: vdmtf ArgLrai-L rqdpd GSPE_ERWCH : 386- 393: llgvl AqrLvrt-L cpscr GSPE_KLEPN : 307- 314: vdmtf ArgLrai-L rqdpd GSPE_PSEAE : 87- 94: hdssa AmqLaed-L ggsld GSPE_PSEAE : 91- 98: aamql AedLggs-L dlaal GSPE_PSEAE : 230- 238: lldkq AgrLnlqhL gmser GSPE_PSEAE : 315- 322: vdmtf ArgLrai-L rqdpd GSPE_PSEAE : 388- 395: mlgvl AqrLvrv-L cpack GSPE_VIBCH : 61- 67: rvvkh AfqLie--L sqaef GSPE_VIBCH : 231- 239: lldkn AtrLdlhsL gmtah GSPE_VIBCH : 316- 323: vdmtf ArgLrai-L rqdpd GSPE_VIBCH : 389- 396: llgvl AqrLvrt-L cpdck GSPE_XANCP : 23- 30: haetc AevLglp-L vdarq GSPE_XANCP : 85- 92: dyaid AvrLatg-L plllq GSPE_XANCP : 89- 95: davrl AtgLpl--L lqvgl GSPE_XANCP : 89- 96: davrl AtgLpll-L qvglr GSPE_XANCP : 414- 421: ingil AqrLvrk-L dlana HOFB_ECOLI : 32- 38: vavvd ApsLel--L dalhf HOFB_ECOLI : 82- 89: khqpk AelLtrt-L qsale HOFB_ECOLI : 347- 354: ltlvi AqrLvrk-L cphcr HOFB_HAEIN : 389- 396: lllvi AqrLvrk-L cskcg PILB_PSEAE : 426- 432: htnsa AetLtr--L lnmgv PILB_PSEAE : 426- 433: htnsa AetLtrl-L nmgvp PILB_PSEAE : 451- 458: vnlii AqrLark-L cshck PILF_NEIGO : 282- 290: ilnsd AasLnidqL gfepf PILF_NEIGO : 367- 374: qgltf AaaLksf-L rqdpd PILF_NEIGO : 440- 447: vslim AqrLlrr-L cssck PILT_PSEAE : 141- 147: ksttl AamLdy--L nntky TAPB_AERHY : 10- 18: pnsgl AlsLaassL lsesd TAPB_AERHY : 294- 302: lldss AarLnieqL gfddr TAPB_AERHY : 310- 316: ddrqk AqyLra--L skpqg TAPB_AERHY : 379- 386: agltf AsaLrsf-L rqdpd TAPB_AERHY : 452- 459: vtlim AqrLark-L cdhck TCPT_VIBCH : 135- 142: ilsse AdsLmfv-L ynvma VIBY_AGRT5 : 225- 233: lgavt AehLlqasL rmrpd VIBY_AGRT9 : 225- 233: lgavs AehLlqasL rmrpd YGCB_ECOLI : 65- 73: kqrvk AwlLffiaL hdigk YGCB_ECOLI : 200- 208: isvle AlfLtpagL sindi YGCB_ECOLI : 328- 335: talay AwkLidp-L O 15: 11.5102 42( 19) A-x(3,4)-L-x(3,4)-L Occurences: 42(19) CMG1_BACSU : 229- 239: iavra AmtghLvltsL htrda GSPE_AERHY : 2- 11: m Aayq-LddtsL paalp GSPE_AERHY : 119- 129: daddd ApiirLinamL seaik GSPE_AERHY : 342- 351: etaqi AvqasLtgh-L vmstl GSPE_AERHY : 459- 468: eaihs Asge-LaierL irdht GSPE_ECOLI : 106- 116: nedsa ApvirLinaiL seaik GSPE_ECOLI : 207- 217: iyger AvlrlLdknsL qlsln GSPE_ECOLI : 329- 338: etaqi AvqasLtgh-L vlstl GSPE_ERWCA : 118- 128: daddd ApiirLinamL teaik GSPE_ERWCA : 341- 350: etaqi AvqasLtgh-L vlstl GSPE_ERWCH : 118- 128: dgedd ApiirLinamL teaik GSPE_ERWCH : 341- 350: etaqi AvqasLtgh-L vlstl GSPE_KLEPN : 112- 122: dsedd ApiirLinamL teaik GSPE_KLEPN : 335- 344: etaqi AvqasLtgh-L vlstl GSPE_PSEAE : 24- 34: lpfsf AkrqgLlflcL eeqyw GSPE_PSEAE : 58- 67: eaqrf Agrr-LplkaL gedaf GSPE_PSEAE : 86- 94: qhdss Aamq-Laed-L ggsld GSPE_PSEAE : 120- 130: eqedd ApiirLinaiL geair GSPE_PSEAE : 343- 352: etaei AvqasLtgh-L vlstl GSPE_VIBCH : 121- 131: esedd ApiikLinamL geaik GSPE_VIBCH : 166- 175: lrevl ApsrkLssl-L vsrvk GSPE_VIBCH : 344- 353: etaqi AvqasLtgh-L vmstl GSPE_XANCP : 369- 378: etari AiqsaLtgh-L vlstl GSPE_XANCP : 373- 383: iaiqs AltghLvlstL htnna HOFB_ECOLI : 32- 41: vavvd ApsleLlda-L hfatt HOFB_ECOLI : 129- 137: dvspd Agva-Ltar-L kvlgn HOFB_ECOLI : 306- 316: iaika AqtghLvlstL htnst HOFB_ECOLI : 334- 342: qqmgv Arwm-Lssa-L tlvia HOFB_HAEIN : 348- 358: ialra AqtghLvlstL htnda PILB_PSEAE : 425- 433: lhtns Aaet-Ltrl-L nmgvp PILF_NEIGO : 414- 422: lhtnn Apat-Lsrm-L nmgva PILT_PSEAE : 15- 24: sakqg AsdlhLsag-L ppmir PILT_PSEAE : 218- 228: lalta AetghLvfgtL httsa TAPB_AERHY : 411- 421: iaika AqtghLvlstL htnsa TCPT_VIBCH : 65- 74: flvsd AnhklLian-L vteqq TCPT_VIBCH : 65- 74: flvsd Anhk-LlianL vteqq VIBY_AGRT5 : 39- 47: afvrq Agaf-Lkfp-L pvsyd VIBY_AGRT5 : 225- 233: lgavt Aehl-Lqas-L rmrpd VIBY_AGRT5 : 288- 298: lvkss AqgasLedrtL idmla VIBY_AGRT9 : 225- 233: lgavs Aehl-Lqas-L rmrpd YGCB_ECOLI : 222- 231: cssll AgfcsLadw-L gswtt YGCB_ECOLI : 264- 273: drqqd Asrv-LelsgL vsnkr YGCB_ECOLI : 326- 335: tetal AyawkLidp-L P 16: 11.5102 54( 19) L-x(2,3)-A-x(1,2)-L Occurences: 54(19) CMG1_BACSU : 11- 17: kvskn LieeAy-L tkasd GSPE_AERHY : 124- 129: apiir Lin-Am-L seaik GSPE_AERHY : 383- 390: lsssl LavlAqrL vrtlc GSPE_ECOLI : 111- 116: apvir Lin-Ai-L seaik GSPE_ERWCA : 123- 128: apiir Lin-Am-L teaik GSPE_ERWCA : 382- 389: lstsl LgvlAqrL vrtlc GSPE_ERWCH : 123- 128: apiir Lin-Am-L teaik GSPE_ERWCH : 382- 389: lstsl LgvlAqrL vrtlc GSPE_ERWCH : 460- 466: rgese Lgi-ArmL gakrv GSPE_KLEPN : 92- 99: gneld LytlAeeL pdtdd GSPE_KLEPN : 117- 122: apiir Lin-Am-L teaik GSPE_PSEAE : 98- 103: dlggs Ldl-Aa-L adqvp GSPE_PSEAE : 125- 130: apiir Lin-Ai-L geair GSPE_PSEAE : 226- 233: vvlrl LdkqAgrL nlqhl GSPE_PSEAE : 384- 391: lsssm LgvlAqrL vrvlc GSPE_VIBCH : 126- 131: apiik Lin-Am-L geaik GSPE_VIBCH : 227- 234: vvmrl LdknAtrL dlhsl GSPE_VIBCH : 385- 392: isssl LgvlAqrL vrtlc GSPE_XANCP : 30- 36: vlglp Lvd-ArqL gdtpp GSPE_XANCP : 338- 344: kpqig Ldf-AnaL rsivr HOFB_ECOLI : 204- 211: mqplq LadfAhaL qqpqg HOFB_ECOLI : 338- 344: varwm Lss-AltL viaqr HOFB_ECOLI : 344- 350: ssalt Lvi-AqrL vrklc HOFB_HAEIN : 38- 45: qqsll LryfAlpL keenn HOFB_HAEIN : 178- 184: riisr LkllAk-L disen HOFB_HAEIN : 385- 392: iknsl LlviAqrL vrklc HOFB_HAEIN : 386- 392: knsll Lvi-AqrL vrklc PILB_PSEAE : 14- 19: glsrq Lvq-An-L ldekt PILB_PSEAE : 14- 20: glsrq Lvq-AnlL dekta PILB_PSEAE : 52- 57: klvsg Lal-Ae-L saeqf PILB_PSEAE : 124- 130: qfstg LtteAi-L veddk PILB_PSEAE : 240- 246: risar LkvmAg-L diser PILB_PSEAE : 310- 315: edqke Lyl-Aa-L kqpqg PILB_PSEAE : 448- 454: atsvn Lii-AqrL arklc PILF_NEIGO : 278- 285: vvmri LnsdAasL nidql PILF_NEIGO : 364- 370: ndkqg LtfaAa-L ksflr PILF_NEIGO : 364- 370: ndkqg Ltf-AaaL ksflr PILF_NEIGO : 437- 443: assvs Lim-AqrL lrrlc PILF_NEIGO : 534- 540: egmvd Lrr-AgiL kimqg PILT_PSEAE : 18- 24: qgasd LhlsAg-L ppmir TAPB_AERHY : 11- 18: nsgla LslaAssL lsesd TAPB_AERHY : 66- 73: ygvpl LdlaAfdL aeipq TAPB_AERHY : 123- 129: gfsfg LhteAl-L veenk TAPB_AERHY : 241- 247: rfsar LkvmAr-L diaer TAPB_AERHY : 290- 297: ivirl LdssAarL nieql TAPB_AERHY : 376- 382: npkag Ltf-AsaL rsflr TAPB_AERHY : 449- 455: assvt Lim-AqrL arklc TCPT_VIBCH : 69- 74: danhk Lli-An-L vteqq TCPT_VIBCH : 131- 138: dyrei LsseAdsL mfvly VIBY_AGRT5 : 54- 60: vsydd LediAi-L agalr VIBY_AGRT5 : 228- 233: vtaeh Llq-As-L rmrpd VIBY_AGRT9 : 54- 60: vsydd LediAi-L agalr VIBY_AGRT9 : 228- 233: vsaeh Llq-As-L rmrpd YGCB_ECOLI : 203- 208: lealf Ltp-Ag-L sindi YGCB_ECOLI : 303- 309: vlvda Lpv-ApgL tviea YGCB_ECOLI : 325- 331: kteta Lay-AwkL idpl Q 17: 11.5102 69( 19) L-x(1,2)-A-x(1,2)-L Occurences: 69(19) CMG1_BACSU : 200- 204: tysag Lk-Ai-L rhdpd GSPE_AERHY : 11- 15: lddts Lp-Aa-L pelpf GSPE_AERHY : 124- 129: apiir LinAm-L seaik GSPE_AERHY : 272- 276: gkstt Ly-Aa-L seins GSPE_AERHY : 317- 321: tfarg Lr-Ai-L rqdpd GSPE_AERHY : 382- 386: llsss Ll-Av-L aqrlv GSPE_ECOLI : 111- 116: apvir LinAi-L seaik GSPE_ECOLI : 156- 160: qpnkk La-Al-L isrik GSPE_ECOLI : 259- 263: gkstt Ly-Ai-L salnt GSPE_ECOLI : 304- 308: sfarg Lr-Ai-L rqdpd GSPE_ERWCA : 123- 128: apiir LinAm-L teaik GSPE_ERWCA : 271- 275: gkstt Ly-Aa-L srlna GSPE_ERWCA : 316- 320: tfarg Lr-Ai-L rqdpd GSPE_ERWCH : 123- 128: apiir LinAm-L teaik GSPE_ERWCH : 271- 275: gkstt Ly-Aa-L splns GSPE_ERWCH : 316- 320: tfarg Lr-Ai-L rqdpd GSPE_ERWCH : 460- 466: rgese LgiArmL gakrv GSPE_KLEPN : 117- 122: apiir LinAm-L teaik GSPE_KLEPN : 162- 166: rpqrr La-Al-L isrik GSPE_KLEPN : 265- 269: gkstt Ly-Aa-L srlda GSPE_KLEPN : 310- 314: tfarg Lr-Ai-L rqdpd GSPE_PSEAE : 98- 103: dlggs LdlAa-L adqvp GSPE_PSEAE : 125- 130: apiir LinAi-L geair GSPE_PSEAE : 170- 174: epkre La-Al-L vsrik GSPE_PSEAE : 273- 277: gkttt Ly-As-L ttlnd GSPE_PSEAE : 318- 322: tfarg Lr-Ai-L rqdpd GSPE_VIBCH : 126- 131: apiik LinAm-L geaik GSPE_VIBCH : 274- 278: gkstt Ly-Ag-L qelns GSPE_VIBCH : 319- 323: tfarg Lr-Ai-L rqdpd GSPE_XANCP : 3- 7: mg Ll-Al-L grlgl GSPE_XANCP : 30- 36: vlglp LvdArqL gdtpp GSPE_XANCP : 338- 344: kpqig LdfAnaL rsivr HOFB_ECOLI : 133- 137: dagva Lt-Ar-L kvlgn HOFB_ECOLI : 277- 281: tfqgv Lr-Al-L rqdpd HOFB_ECOLI : 338- 344: varwm LssAltL viaqr HOFB_ECOLI : 344- 350: ssalt LviAqrL vrklc HOFB_HAEIN : 180- 184: isrlk Ll-Ak-L disen HOFB_HAEIN : 386- 392: knsll LviAqrL vrklc HOFB_HAEIN : 438- 443: tdfkn Lr-AsgL ekvsq PILB_PSEAE : 14- 19: glsrq LvqAn-L ldekt PILB_PSEAE : 14- 20: glsrq LvqAnlL dekta PILB_PSEAE : 52- 57: klvsg LalAe-L saeqf PILB_PSEAE : 310- 315: edqke LylAa-L kqpqg PILB_PSEAE : 381- 385: dfsqa Lr-Af-L rqdpd PILB_PSEAE : 448- 454: atsvn LiiAqrL arklc PILF_NEIGO : 364- 370: ndkqg LtfAaaL ksflr PILF_NEIGO : 437- 443: assvs LimAqrL lrrlc PILF_NEIGO : 534- 540: egmvd LrrAgiL kimqg PILT_PSEAE : 20- 24: asdlh Ls-Ag-L ppmir PILT_PSEAE : 140- 144: gkstt La-Am-L dylnn PILT_PSEAE : 323- 328: mclkg Lv-AkgL isren TAPB_AERHY : 13- 18: glals La-AssL lsesd TAPB_AERHY : 68- 73: vplld La-AfdL aeipq TAPB_AERHY : 376- 382: npkag LtfAsaL rsflr TAPB_AERHY : 449- 455: assvt LimAqrL arklc TAPB_AERHY : 484- 488: ftqqq La-Ag-L rlfkp TCPT_VIBCH : 69- 74: danhk LliAn-L vteqq TCPT_VIBCH : 70- 74: anhkl Li-An-L vteqq VIBY_AGRT5 : 75- 80: gprnp Lc-AteL pdger VIBY_AGRT5 : 151- 155: ydngd Le-Af-L hacvv VIBY_AGRT5 : 228- 233: vtaeh LlqAs-L rmrpd VIBY_AGRT5 : 229- 233: taehl Lq-As-L rmrpd VIBY_AGRT9 : 75- 80: gprnp Lc-AteL pgger VIBY_AGRT9 : 151- 155: fdngd Le-Af-L hacvv VIBY_AGRT9 : 228- 233: vsaeh LlqAs-L rmrpd VIBY_AGRT9 : 229- 233: saehl Lq-As-L rmrpd YGCB_ECOLI : 198- 203: ewisv Le-AlfL tpagl YGCB_ECOLI : 203- 208: lealf LtpAg-L sindi YGCB_ECOLI : 303- 309: vlvda LpvApgL tviea YGCB_ECOLI : 325- 331: kteta LayAwkL idpl R 18: 11.5102 42( 19) A-x(0,1)-L-x(2,3)-A Occurences: 42(19) CMG1_BACSU : 15- 20: nliee AyLtk-A sdihi GSPE_AERHY : 127- 132: irlin AmLse-A ikeea GSPE_ECOLI : 114- 119: irlin AiLse-A iketa GSPE_ECOLI : 168- 173: rikvm ArLdi-A ekrip GSPE_ECOLI : 487- 493: mrvas AtLeseA GSPE_ERWCA : 47- 52: aqtpp AaLle-A rriag GSPE_ERWCA : 48- 52: qtppa A-Lle-A rriag GSPE_ERWCA : 126- 131: irlin AmLte-A iknka GSPE_ERWCA : 180- 185: rikvm AkLdi-A ekrvp GSPE_ERWCH : 126- 131: irlin AmLte-A ikhka GSPE_ERWCH : 180- 185: rikvm AkLdi-A ekrvp GSPE_KLEPN : 42- 46: vtapq A-Lle-A rrvaa GSPE_KLEPN : 120- 125: irlin AmLte-A ikeka GSPE_KLEPN : 174- 179: rikvm AsLdi-A ekrip GSPE_PSEAE : 4- 10: mmt ApLpdiA apaap GSPE_PSEAE : 66- 71: rlplk A-LgedA fnqal GSPE_PSEAE : 128- 133: irlin AiLge-A irena GSPE_PSEAE : 182- 187: rikvm ArLdi-A ekrip GSPE_VIBCH : 44- 50: siyyl ApLsmeA lvetk GSPE_VIBCH : 129- 134: iklin AmLge-A ikega GSPE_VIBCH : 183- 188: rvkvm AkLdi-A ekrvp GSPE_XANCP : 138- 143: tddie A-LrdlA seapv GSPE_XANCP : 194- 199: gespp AkLta-A visri GSPE_XANCP : 208- 213: rikim AkLni-A errlp HOFB_ECOLI : 40- 44: lelld A-Lhf-A ttkri HOFB_ECOLI : 92- 97: rtlqs A-LeqrA sdihi HOFB_HAEIN : 133- 138: qifes A-LqknA sdihl HOFB_HAEIN : 344- 348: esami A-Lra-A qtghl PILB_PSEAE : 238- 244: asris ArLkvmA gldis PILF_NEIGO : 183- 188: ktlsd A-LrsgA sdihf PILT_PSEAE : 188- 192: lgfse A-Lrs-A lredp PILT_PSEAE : 214- 218: etirl A-Lta-A etghl TAPB_AERHY : 10- 14: pnsgl A-Lsl-A assll TAPB_AERHY : 10- 15: pnsgl A-LslaA sslls TAPB_AERHY : 239- 245: anrfs ArLkvmA rldia TAPB_AERHY : 245- 250: rlkvm ArLdi-A errlp TAPB_AERHY : 374- 379: qvnpk AgLtf-A salrs TCPT_VIBCH : 323- 327: kptve A-Lss-A vesgh VIBY_AGRT5 : 58- 63: dledi AiLag-A lrkqd VIBY_AGRT9 : 58- 63: dledi AiLag-A lrkqd YGCB_ECOLI : 178- 184: rwemp AsLasyA aqdkq YGCB_ECOLI : 302- 306: qvlvd A-Lpv-A pgltv YGCB_ECOLI : 324- 328: gktet A-Lay-A wklid S 19: 11.5102 48( 19) A-x(0,1)-L-x(1,2)-A Occurences: 48(19) CMG1_BACSU : 15- 20: nliee AyLtkA sdihi CMG1_BACSU : 198- 202: gvtys AgLk-A ilrhd GSPE_AERHY : 127- 132: irlin AmLseA ikeea GSPE_ECOLI : 60- 64: qadfe ArLe-A vfhqn GSPE_ECOLI : 114- 119: irlin AiLseA iketa GSPE_ECOLI : 168- 173: rikvm ArLdiA ekrip GSPE_ECOLI : 261- 265: sttly AiLs-A lntpg GSPE_ERWCA : 47- 52: aqtpp AaLleA rriag GSPE_ERWCA : 48- 52: qtppa AlLe-A rriag GSPE_ERWCA : 48- 52: qtppa A-LleA rriag GSPE_ERWCA : 126- 131: irlin AmLteA iknka GSPE_ERWCA : 180- 185: rikvm AkLdiA ekrvp GSPE_ERWCA : 360- 363: lhtns A-Lg-A lsrlq GSPE_ERWCH : 126- 131: irlin AmLteA ikhka GSPE_ERWCH : 180- 185: rikvm AkLdiA ekrvp GSPE_ERWCH : 360- 363: lhtns A-Lg-A lsrlq GSPE_KLEPN : 42- 46: vtapq AlLe-A rrvaa GSPE_KLEPN : 42- 46: vtapq A-LleA rrvaa GSPE_KLEPN : 120- 125: irlin AmLteA ikeka GSPE_KLEPN : 174- 179: rikvm AsLdiA ekrip GSPE_KLEPN : 354- 357: lhtns A-Lg-A isrlq GSPE_PSEAE : 75- 78: dafnq A-La-A syqhd GSPE_PSEAE : 128- 133: irlin AiLgeA irena GSPE_PSEAE : 182- 187: rikvm ArLdiA ekrip GSPE_VIBCH : 129- 134: iklin AmLgeA ikega GSPE_VIBCH : 183- 188: rvkvm AkLdiA ekrvp GSPE_XANCP : 194- 198: gespp AkLt-A avisr GSPE_XANCP : 194- 199: gespp AkLtaA visri GSPE_XANCP : 208- 213: rikim AkLniA errlp HOFB_ECOLI : 40- 44: lelld A-LhfA ttkri HOFB_ECOLI : 132- 135: pdagv A-Lt-A rlkvl HOFB_HAEIN : 344- 347: esami A-Lr-A aqtgh HOFB_HAEIN : 344- 348: esami A-LraA qtghl PILB_PSEAE : 25- 28: ldekt A-Lq-A qtqaq PILB_PSEAE : 55- 59: sglal AeLs-A eqfgi PILB_PSEAE : 380- 383: mdfsq A-Lr-A flrqd PILF_NEIGO : 49- 53: spksl AaLi-A rvfsy PILF_NEIGO : 50- 53: pksla A-Li-A rvfsy PILT_PSEAE : 188- 192: lgfse A-LrsA lredp PILT_PSEAE : 214- 217: etirl A-Lt-A aetgh PILT_PSEAE : 214- 218: etirl A-LtaA etghl TAPB_AERHY : 10- 14: pnsgl A-LslA assll TAPB_AERHY : 245- 250: rlkvm ArLdiA errlp TAPB_AERHY : 374- 379: qvnpk AgLtfA salrs TCPT_VIBCH : 323- 327: kptve A-LssA vesgh VIBY_AGRT5 : 58- 63: dledi AiLagA lrkqd VIBY_AGRT5 : 153- 157: ngdle AfLh-A cvvgr VIBY_AGRT5 : 218- 222: yskng AgLg-A vtaeh VIBY_AGRT9 : 58- 63: dledi AiLagA lrkqd VIBY_AGRT9 : 153- 157: ngdle AfLh-A cvvsr VIBY_AGRT9 : 218- 222: yskng AgLg-A vsaeh YGCB_ECOLI : 302- 306: qvlvd A-LpvA pgltv YGCB_ECOLI : 324- 328: gktet A-LayA wklid T 20: 11.5102 24( 19) G-x(0,1)-K-x(3,4)-L Occurences: 24(19) CMG1_BACSU : 149- 154: gptgs G-Kttt-L yslvq GSPE_AERHY : 267- 272: gptgs G-Kstt-L yaals GSPE_ECOLI : 254- 259: gptgs G-Kstt-L yails GSPE_ERWCA : 266- 271: gptgs G-Kstt-L yaals GSPE_ERWCH : 266- 271: gptas G-Kstt-L yaals GSPE_KLEPN : 260- 265: gptgs G-Kstt-L yaals GSPE_PSEAE : 268- 273: gptgs G-Kttt-L yaslt GSPE_VIBCH : 269- 274: gptgs G-Kstt-L yaglq GSPE_XANCP : 229- 234: mlrvq G-Keld-L rvstv GSPE_XANCP : 294- 299: gptgs G-Kttt-L ytals HOFB_ECOLI : 177- 184: lpcrg GeKvvlrL lqqvg HOFB_ECOLI : 227- 232: gptgs G-Ktvt-L ysalq HOFB_HAEIN : 269- 274: gptgs G-Ksis-L ytalq PILB_PSEAE : 331- 336: gptgs G-Ktvs-L ytgln PILF_NEIGO : 320- 325: gptgs G-Ktvs-L ytcln PILT_PSEAE : 135- 140: gptgs G-Kstt-L aamld TAPB_AERHY : 282- 289: lptmw GeKivirL ldssa TAPB_AERHY : 332- 337: gptgs G-Ktvs-L ytgln TCPT_VIBCH : 241- 246: gttgs G-Ksts-L kkyie TCPT_VIBCH : 410- 416: acnhs GfKgrl-L lletl TCPT_VIBCH : 410- 417: acnhs GfKgrllL letlv VIBY_AGRT5 : 276- 283: anpvq GfKklfsL vkssa VIBY_AGRT9 : 276- 283: anpiq GfKklfsL vkssv YGCB_ECOLI : 12- 18: ichyw G-KssksL tkgnd YGCB_ECOLI : 319- 325: aptgs G-KtetaL ayawk Number of patterns evaluated by Pratt:3825 Total running time: 7 seconds