------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 24 sequences from file T2SP_D PATTERN CONSERVATION: CM: min Nr of Seqs to Match 24 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename T2SP_D.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: COME_HAEIN 445 GSPD_AERHY 678 GSPD_AERSA 678 GSPD_ECOLI 654 GSPD_ERWCA 649 GSPD_ERWCH 712 GSPD_KLEPN 660 GSPD_PSEAE 658 GSPD_VIBCH 674 GSPD_XANCP 759 GSQD_ERWCH 710 HOFQ_ECOLI 412 HRA1_XANCV 607 HRPH_PSESY 748 INVG_SALTY 562 MXID_SHIFL 566 OMC_NEIGO 711 PILQ_PSEAE 714 VG4_BPF1 426 VG4_BPFD 426 VG4_BPI22 428 VG4_BPIKE 437 VG4_BPM13 426 YSCC_YEREN 607 Pratt run started at Thu Feb 6 21:20:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 36( 24) G-x(5)-G-G 2: 12.0102 24( 24) P-x(1,2)-L-x(3)-P 3: 11.5102 31( 24) I-x(0,2)-P-x(4)-L 4: 11.5102 31( 24) G-x(1,3)-I-x(5)-L 5: 11.5102 56( 24) V-x(0,1)-L-x(0,1)-L 6: 11.5102 68( 24) V-x(2,4)-G-x(5)-G 7: 11.5102 59( 24) G-x(2,3)-L-x(0,1)-L 8: 11.5102 52( 24) G-x(1,2)-L-x(0,1)-L 9: 11.5102 46( 24) V-x(1,2)-G-x(1,2)-V 10: 11.5102 55( 24) V-x(0,1)-G-x(1,2)-V 11: 11.5102 41( 24) L-x(3)-L-x(1,3)-A 12: 11.5102 43( 24) L-x(3,4)-L-x(2,3)-A 13: 11.5102 56( 24) L-L-x(2,4)-L 14: 11.5102 63( 24) L-x(0,1)-L-x(1,2)-L 15: 11.5102 45( 24) L-x(2,4)-A-L 16: 11.5102 55( 24) G-x(3,5)-G-x(3)-G 17: 11.5102 54( 24) V-x(0,1)-A-x(3,4)-T 18: 11.5102 45( 24) S-x(0,1)-L-x(0,1)-V 19: 11.5102 36( 24) L-x(3,4)-V-x(2,3)-L 20: 11.5102 44( 24) S-x(0,1)-L-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 14.2385 24( 24) P-x(1,2)-L-[AGNS]-x(2)-P B 2: 13.1657 42( 24) G-x(2,3)-L-x(0,1)-L-x(2)-[ADEGQS] C 3: 13.1594 54( 24) V-x(2,4)-G-x(2)-[AGILPV]-x(2)-G D 4: 12.9344 38( 24) G-x(1,2)-L-x(0,1)-L-x(2)-[ADEGQST] E 5: 12.5102 36( 24) G-x(5)-G-G F 6: 12.0102 24( 24) P-x(1,2)-L-x(3)-P G 7: 11.5102 31( 24) I-x(0,2)-P-x(4)-L H 8: 11.5102 31( 24) G-x(1,3)-I-x(5)-L I 9: 11.5102 56( 24) V-x(0,1)-L-x(0,1)-L J 10: 11.5102 46( 24) V-x(1,2)-G-x(1,2)-V K 11: 11.5102 55( 24) V-x(0,1)-G-x(1,2)-V L 12: 11.5102 41( 24) L-x(3)-L-x(1,3)-A M 13: 11.5102 43( 24) L-x(3,4)-L-x(2,3)-A N 14: 11.5102 56( 24) L-L-x(2,4)-L O 15: 11.5102 63( 24) L-x(0,1)-L-x(1,2)-L P 16: 11.5102 45( 24) L-x(2,4)-A-L Q 17: 11.5102 55( 24) G-x(3,5)-G-x(3)-G R 18: 11.5102 54( 24) V-x(0,1)-A-x(3,4)-T S 19: 11.5102 45( 24) S-x(0,1)-L-x(0,1)-V T 20: 11.5102 36( 24) L-x(3,4)-V-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 14.2385 24( 24) P-x(1,2)-L-[AGNS]-x(2)-P Occurences: 24(24) COME_HAEIN : 395- 401: sedkv Pl-LGdiP vikrl GSPD_AERHY : 567- 573: evskv Pl-LGdiP vlgyl GSPD_AERSA : 567- 573: kvskv Pl-LGdiP vlgyl GSPD_ECOLI : 565- 571: qvskv Pl-LGdiP lvgql GSPD_ERWCA : 549- 555: sankv Pl-LGdiP vlgyl GSPD_ERWCH : 616- 622: tnnkv Pl-LGdiP wlgsl GSPD_KLEPN : 561- 567: tadkv Pl-LGdiP vigal GSPD_PSEAE : 571- 577: aeskv Pl-LGdiP llgrl GSPD_VIBCH : 577- 583: seskv Pl-LGdiP llgql GSPD_XANCP : 699- 705: gsngi Pf-LSklP vvgal GSQD_ERWCH : 614- 620: sndkv Pl-LGdiP wlgsl HOFQ_ECOLI : 376- 382: gqdsv Pl-LGdiP wfgql HRA1_XANCV : 572- 578: dlnai Pg-LSkiP lvgnl HRPH_PSESY : 504- 510: kvhkv Pl-LGdiP yigkl INVG_SALTY : 485- 491: tvqsi Pf-LGklP ligsl MXID_SHIFL : 487- 493: eiisi Pf-LSsiP vignv OMC_NEIGO : 678- 684: tltkv Pl-LAtsP lsats PILQ_PSEAE : 672- 678: svekv Pf-LGelP ylgrl VG4_BPF1 : 390- 396: qdsgv Pf-LSkiP ligll VG4_BPFD : 390- 396: qdsgv Pf-LSkiP ligll VG4_BPI22 : 24- 31: safae PvtLNnsP vrsfv VG4_BPIKE : 32- 39: nvlad PvnLNnaP vrsfv VG4_BPM13 : 390- 396: qdsgv Pf-LSkiP ligll YSCC_YEREN : 476- 482: alskv Pl-LGdiP yigal B 2: 13.1657 42( 24) G-x(2,3)-L-x(0,1)-L-x(2)-[ADEGQS] Occurences: 42(24) COME_HAEIN : 142- 150: ksltt GsgsL-LspA gsitf COME_HAEIN : 260- 268: vakin Grl-LdLelS alere GSPD_AERHY : 366- 374: veiad Gdg-LnLgvQ wantn GSPD_AERHY : 504- 512: pqine GdsvL-LtiE qevss GSPD_AERSA : 365- 373: veiad Gdg-LnLgvQ wantn GSPD_AERSA : 503- 511: pqine GdsvL-LniE qevss GSPD_ECOLI : 364- 372: vevqd Gng-LnLgvQ wankn GSPD_ECOLI : 504- 512: pqvne GdavL-LeiE qevss GSPD_ERWCA : 6- 13: mllls Gsv-L-LmaS slaws GSPD_ERWCA : 485- 493: pqine GdsvL-LeiE qevss GSPD_ERWCA : 612- 620: rnvsn GeggL-LdnD llrlp GSPD_ERWCH : 14- 22: swgwl GltvL-LlgS pcgwa GSPD_ERWCH : 552- 560: pqine GdsvL-LqiE qevss GSPD_KLEPN : 497- 505: pqine GdsvL-LeiE qevss GSPD_PSEAE : 508- 516: phind Gaa-LrLeiE qeisa GSPD_VIBCH : 638- 645: fraek Glr-L-LddA svpvl GSPD_XANCP : 418- 427: fggss GsgmLqLppS tnqng GSQD_ERWCH : 14- 22: swgwl GltvL-LlgS pcgwa GSQD_ERWCH : 550- 558: pqine GdsvL-LqiE qevss HOFQ_ECOLI : 241- 249: igrin Grl-LdLelS aleqk HOFQ_ECOLI : 314- 323: tvlqk GrirLkLhiS qnvpg HRA1_XANCV : 551- 558: afvne Gqs-L-LiaG yayda HRPH_PSESY : 220- 227: ggsin Gmd-L-LgrG grgng HRPH_PSESY : 611- 619: slcdp Gqg-LsLdgQ rsqwy INVG_SALTY : 464- 471: arvph Gks-L-LvgG ytrda MXID_SHIFL : 466- 473: arvpq Gks-L-LigG ythet OMC_NEIGO : 543- 552: ardfs GalnLeLsaS eslsk PILQ_PSEAE : 281- 289: nfayt Gek-LsLnfQ didvr VG4_BPF1 : 168- 175: vlsvd Gsn-L-LvvS apkdi VG4_BPF1 : 369- 376: vnlrd Gqt-L-LlgG ltdyk VG4_BPFD : 168- 175: vlsvd Gsn-L-LvvS apkdi VG4_BPFD : 369- 376: vnlrd Gqt-L-LlgG ltdyk VG4_BPI22 : 253- 261: fgifn Gni-LaLslQ avqsd VG4_BPI22 : 331- 340: tpvvm GngqLvLtiD tkads VG4_BPI22 : 371- 378: vqikd Gqt-L-LlgG lissn VG4_BPIKE : 178- 186: vidyp GnnsL-LvsG saaim VG4_BPIKE : 262- 270: fgifn Gnv-LaLsiQ avknd VG4_BPIKE : 340- 349: tpvvm GngqLvLtiD tkads VG4_BPIKE : 380- 387: vqikd Gqt-L-LlgG lidsn VG4_BPM13 : 168- 175: vlsid Gsn-L-LvvS apkdi VG4_BPM13 : 369- 376: vnlrd Gqt-L-LlgG ltdyk YSCC_YEREN : 15- 22: krvlt Gtl-L-LlsS yswaq C 3: 13.1594 54( 24) V-x(2,4)-G-x(2)-[AGILPV]-x(2)-G Occurences: 54(24) COME_HAEIN : 369- 380: eintq VfakdGetIvlG gvfhd GSPD_AERHY : 361- 372: veaii VeiadGdgLnlG vqwan GSPD_AERHY : 541- 552: tvkna VlvksGetVvlG glmde GSPD_AERHY : 543- 552: knavl Vks--GetVvlG glmde GSPD_AERHY : 566- 576: eevsk Vpll-GdiPvlG ylfrs GSPD_AERSA : 360- 371: veaii VeiadGdgLnlG vqwan GSPD_AERSA : 541- 552: tikna VlvksGetVvlG glmde GSPD_AERSA : 543- 552: knavl Vks--GetVvlG glmde GSPD_AERSA : 566- 576: ekvsk Vpll-GdiPvlG ylfrs GSPD_ECOLI : 359- 370: veaii VevqdGngLnlG vqwan GSPD_ECOLI : 361- 370: aiive Vqd--GngLnlG vqwan GSPD_ECOLI : 539- 550: tiqna VlvktGetVvlG glldd GSPD_ECOLI : 541- 550: qnavl Vkt--GetVvlG glldd GSPD_ECOLI : 564- 574: eqvsk Vpll-GdiPlvG qlfry GSPD_ERWCA : 523- 534: tvnna VlvssGdtVvvG glldk GSPD_ERWCA : 525- 534: nnavl Vss--GdtVvvG glldk GSPD_ERWCA : 548- 558: esank Vpll-GdiPvlG ylfrs GSPD_ERWCH : 615- 625: etnnk Vpll-GdiPwlG slfrs GSPD_KLEPN : 535- 546: tvnna VlvgsGetVvvG glldk GSPD_KLEPN : 537- 546: nnavl Vgs--GetVvvG glldk GSPD_KLEPN : 560- 570: dtadk Vpll-GdiPviG alfrs GSPD_PSEAE : 570- 580: qaesk Vpll-GdiPllG rlfrs GSPD_PSEAE : 604- 615: lrptv VrdsaGlaAlsG kkysd GSPD_PSEAE : 623- 632: ysdir Vid--GtrGpeG rpsil GSPD_VIBCH : 351- 362: ieali VemaeGdgInlG vqwgs GSPD_VIBCH : 551- 562: qlnts VmvqdGqmLvlG glide GSPD_VIBCH : 553- 562: ntsvm Vqd--GqmLvlG glide GSPD_VIBCH : 576- 586: esesk Vpll-GdiPllG qlfrs GSPD_XANCP : 350- 361: drlse VfggrGngGnsG pslvp GSQD_ERWCH : 588- 599: tvnna VmvtnGetVvvG glldk GSQD_ERWCH : 590- 599: nnavm Vtn--GetVvvG glldk GSQD_ERWCH : 613- 623: esndk Vpll-GdiPwlG slfrs HOFQ_ECOLI : 350- 361: eietq VevksGetLalG giftr HOFQ_ECOLI : 352- 361: etqve Vks--GetLalG giftr HOFQ_ECOLI : 375- 385: sgqds Vpll-GdiPwfG qlfrh HRA1_XANCV : 228- 239: argap VaaipGpgAnfG rvqpi HRPH_PSESY : 137- 148: rfgwg VlpneGvvLvrG pakyv HRPH_PSESY : 479- 490: vstqa ViaehGslVigG fhgle HRPH_PSESY : 503- 513: dkvhk Vpll-GdiPyiG kllfq INVG_SALTY : 461- 470: stiar Vph--GksLlvG gytrd MXID_SHIFL : 463- 472: stiar Vpq--GksLliG gythe OMC_NEIGO : 654- 663: ntqam Ven--GgtLivG giyee OMC_NEIGO : 654- 664: ntqam Veng-GtlIvgG iyeen PILQ_PSEAE : 399- 410: klfqs VtsdgGqeGkeG argsi PILQ_PSEAE : 648- 657: nakil Vnd--GetIviG gvfsn PILQ_PSEAE : 671- 681: ksvek Vpfl-GelPylG rlfrr VG4_BPF1 : 364- 375: siatt VnlrdGqtLllG gltdy VG4_BPFD : 364- 375: siatt VnlrdGqtLllG gltdy VG4_BPI22 : 76- 87: dffks VlnanGlvVvaG npavv VG4_BPI22 : 366- 377: qiqtt VqikdGqtLllG gliss VG4_BPIKE : 84- 95: dffks VlnanGfvLmaG dpsgv VG4_BPIKE : 375- 386: hmqtt VqikdGqtLllG glids VG4_BPM13 : 364- 375: siatt VnlrdGqtLllG gltdy YSCC_YEREN : 452- 461: dtvar Vgh--GqsLiiG giyrd YSCC_YEREN : 475- 485: valsk Vpll-GdiPyiG alfrr D 4: 12.9344 38( 24) G-x(1,2)-L-x(0,1)-L-x(2)-[ADEGQST] Occurences: 38(24) COME_HAEIN : 144- 150: lttgs Gs-L-LspA gsitf COME_HAEIN : 260- 266: vakin Gr-L-LdlE lsale COME_HAEIN : 260- 268: vakin GrlLdLelS alere GSPD_AERHY : 366- 374: veiad GdgLnLgvQ wantn GSPD_AERSA : 365- 373: veiad GdgLnLgvQ wantn GSPD_ECOLI : 364- 372: vevqd GngLnLgvQ wankn GSPD_ERWCA : 6- 13: mllls GsvL-LmaS slaws GSPD_ERWCA : 534- 540: dtvvv Gg-L-LdkS tnesa GSPD_ERWCA : 614- 620: vsnge Gg-L-LdnD llrlp GSPD_ERWCH : 601- 607: etvvv Gg-L-LdkT aietn GSPD_KLEPN : 546- 552: etvvv Gg-L-LdkS vsdta GSPD_PSEAE : 508- 516: phind GaaLrLeiE qeisa GSPD_VIBCH : 638- 645: fraek GlrL-LddA svpvl GSPD_XANCP : 420- 427: gssgs Gm-LqLppS tnqng GSQD_ERWCH : 599- 605: etvvv Gg-L-LdkT svesn HOFQ_ECOLI : 241- 247: igrin Gr-L-LdlE lsale HOFQ_ECOLI : 241- 249: igrin GrlLdLelS aleqk HRA1_XANCV : 265- 272: gggas Gi-LgLpsS wfgga HRA1_XANCV : 551- 558: afvne GqsL-LiaG yayda HRPH_PSESY : 220- 227: ggsin GmdL-LgrG grgng HRPH_PSESY : 513- 519: dipyi Gk-L-LfqS rsrel HRPH_PSESY : 611- 619: slcdp GqgLsLdgQ rsqwy INVG_SALTY : 464- 471: arvph GksL-LvgG ytrda INVG_SALTY : 488- 495: sipfl Gk-LpLigS lfrys MXID_SHIFL : 466- 473: arvpq GksL-LigG ythet OMC_NEIGO : 543- 550: ardfs Ga-LnLelS asesl PILQ_PSEAE : 281- 289: nfayt GekLsLnfQ didvr VG4_BPF1 : 168- 175: vlsvd GsnL-LvvS apkdi VG4_BPF1 : 369- 376: vnlrd GqtL-LlgG ltdyk VG4_BPFD : 168- 175: vlsvd GsnL-LvvS apkdi VG4_BPFD : 369- 376: vnlrd GqtL-LlgG ltdyk VG4_BPI22 : 253- 261: fgifn GniLaLslQ avqsd VG4_BPI22 : 333- 340: vvmgn Gq-LvLtiD tkads VG4_BPI22 : 371- 378: vqikd GqtL-LlgG lissn VG4_BPIKE : 262- 270: fgifn GnvLaLsiQ avknd VG4_BPIKE : 342- 349: vvmgn Gq-LvLtiD tkads VG4_BPIKE : 380- 387: vqikd GqtL-LlgG lidsn VG4_BPM13 : 168- 175: vlsid GsnL-LvvS apkdi VG4_BPM13 : 369- 376: vnlrd GqtL-LlgG ltdyk YSCC_YEREN : 15- 21: krvlt Gt-L-LllS syswa YSCC_YEREN : 15- 22: krvlt GtlL-LlsS yswaq YSCC_YEREN : 15- 22: krvlt Gt-LlLlsS yswaq E 5: 12.5102 36( 24) G-x(5)-G-G Occurences: 36(24) COME_HAEIN : 374- 381: vfakd GetivlGG vfhdt GSPD_AERHY : 301- 308: dkkgg GtattaGG gasig GSPD_AERHY : 307- 314: tatta GggasiGG gklai GSPD_AERHY : 308- 315: attag GgasigGG klais GSPD_AERHY : 546- 553: vlvks GetvvlGG lmdeq GSPD_AERSA : 299- 306: eadkk GggttaGG gnasi GSPD_AERSA : 300- 307: adkkg GgttagGG nasig GSPD_AERSA : 306- 313: gttag GgnasiGG gklai GSPD_AERSA : 307- 314: ttagg GnasigGG klais GSPD_AERSA : 546- 553: vlvks GetvvlGG lmdeq GSPD_ECOLI : 544- 551: vlvkt GetvvlGG llddf GSPD_ERWCA : 528- 535: vlvss GdtvvvGG lldks GSPD_ERWCH : 346- 353: fgsaf GsanssGG rtivi GSPD_KLEPN : 540- 547: vlvgs GetvvvGG lldks GSPD_PSEAE : 312- 319: nnggq GgeqtgGG rpsni GSPD_PSEAE : 550- 557: ilaen GqviviGG liqdd GSPD_VIBCH : 556- 563: vmvqd GqmlvlGG lider GSPD_XANCP : 361- 368: nggns GpslvpGG vvnml GSPD_XANCP : 408- 415: gssqs GtsgsfGG ssgsg GSQD_ERWCH : 346- 353: fgsaf GstsssGG rtiti GSQD_ERWCH : 593- 600: vmvtn GetvvvGG lldkt HOFQ_ECOLI : 355- 362: vevks GetlalGG iftrk HRA1_XANCV : 239- 246: pganf GrvqpiGG gssnt HRA1_XANCV : 422- 429: gaatd GattpvGG tltav HRPH_PSESY : 230- 237: grggr GnglagGG spdtp INVG_SALTY : 464- 471: arvph GksllvGG ytrda MXID_SHIFL : 466- 473: arvpq GkslliGG ythet OMC_NEIGO : 507- 514: safgw GvnsgfGG gdkwe OMC_NEIGO : 657- 664: amven GgtlivGG iyeen PILQ_PSEAE : 651- 658: ilvnd GetiviGG vfsne VG4_BPF1 : 369- 376: vnlrd GqtlllGG ltdyk VG4_BPFD : 369- 376: vnlrd GqtlllGG ltdyk VG4_BPI22 : 371- 378: vqikd GqtlllGG lissn VG4_BPIKE : 380- 387: vqikd GqtlllGG lidsn VG4_BPM13 : 369- 376: vnlrd GqtlllGG ltdyk YSCC_YEREN : 455- 462: arvgh GqsliiGG iyrde F 6: 12.0102 24( 24) P-x(1,2)-L-x(3)-P Occurences: 24(24) COME_HAEIN : 395- 401: sedkv Pl-LgdiP vikrl GSPD_AERHY : 567- 573: evskv Pl-LgdiP vlgyl GSPD_AERSA : 567- 573: kvskv Pl-LgdiP vlgyl GSPD_ECOLI : 565- 571: qvskv Pl-LgdiP lvgql GSPD_ERWCA : 549- 555: sankv Pl-LgdiP vlgyl GSPD_ERWCH : 616- 622: tnnkv Pl-LgdiP wlgsl GSPD_KLEPN : 561- 567: tadkv Pl-LgdiP vigal GSPD_PSEAE : 571- 577: aeskv Pl-LgdiP llgrl GSPD_VIBCH : 577- 583: seskv Pl-LgdiP llgql GSPD_XANCP : 699- 705: gsngi Pf-LsklP vvgal GSQD_ERWCH : 614- 620: sndkv Pl-LgdiP wlgsl HOFQ_ECOLI : 376- 382: gqdsv Pl-LgdiP wfgql HRA1_XANCV : 572- 578: dlnai Pg-LskiP lvgnl HRPH_PSESY : 504- 510: kvhkv Pl-LgdiP yigkl INVG_SALTY : 485- 491: tvqsi Pf-LgklP ligsl MXID_SHIFL : 487- 493: eiisi Pf-LssiP vignv OMC_NEIGO : 678- 684: tltkv Pl-LatsP lsats PILQ_PSEAE : 672- 678: svekv Pf-LgelP ylgrl VG4_BPF1 : 390- 396: qdsgv Pf-LskiP ligll VG4_BPFD : 390- 396: qdsgv Pf-LskiP ligll VG4_BPI22 : 24- 31: safae PvtLnnsP vrsfv VG4_BPIKE : 32- 39: nvlad PvnLnnaP vrsfv VG4_BPM13 : 390- 396: qdsgv Pf-LskiP ligll YSCC_YEREN : 476- 482: alskv Pl-LgdiP yigal G 7: 11.5102 31( 24) I-x(0,2)-P-x(4)-L Occurences: 31(24) COME_HAEIN : 400- 406: pllgd I--PvikrL fskes GSPD_AERHY : 572- 578: pllgd I--PvlgyL frsts GSPD_AERSA : 572- 578: pllgd I--PvlgyL frstn GSPD_ECOLI : 570- 576: pllgd I--PlvgqL fryts GSPD_ERWCA : 554- 560: pllgd I--PvlgyL frsns GSPD_ERWCH : 621- 627: pllgd I--PwlgsL frskt GSPD_KLEPN : 566- 572: pllgd I--PvigaL frsts GSPD_PSEAE : 160- 166: pvsel I--PlirpL vpqyg GSPD_PSEAE : 576- 582: pllgd I--PllgrL frstk GSPD_VIBCH : 582- 588: pllgd I--PllgqL frsts GSPD_XANCP : 166- 173: ggryn Iv-PadqaL agtva GSPD_XANCP : 304- 311: navlv It-PqpryL dqiqq GSPD_XANCP : 698- 704: dgsng I--PflskL pvvga GSQD_ERWCH : 619- 625: pllgd I--PwlgsL frsks HOFQ_ECOLI : 381- 387: pllgd I--PwfgqL frhdg HRA1_XANCV : 210- 216: gqdvq I--PgmasL lrsmy HRA1_XANCV : 577- 583: pglsk I--PlvgnL fkhrq HRPH_PSESY : 389- 397: gsasv IgnPsiltL enqpa HRPH_PSESY : 509- 515: pllgd I--PyigkL lfqsr INVG_SALTY : 484- 490: dtvqs I--PflgkL pligs MXID_SHIFL : 546- 553: qkttq Ii-PsettL ledek MXID_SHIFL : 547- 553: kttqi I--PsettL ledek OMC_NEIGO : 408- 414: qkcgr I--PqhpaL dnadt OMC_NEIGO : 435- 442: rgsvl Id-PatntL ivtdt PILQ_PSEAE : 57- 65: prgyt IeqPariaL dlpgv VG4_BPF1 : 395- 401: pflsk I--PliglL fssrs VG4_BPFD : 395- 401: pflsk I--PliglL fssrs VG4_BPI22 : 397- 403: pfmsk I--PligwL frshs VG4_BPIKE : 174- 182: gggdv IdyPgnnsL lvsgs VG4_BPM13 : 395- 401: pflsk I--PliglL fssrs YSCC_YEREN : 481- 487: pllgd I--PyigaL frrks H 8: 11.5102 31( 24) G-x(1,3)-I-x(5)-L Occurences: 31(24) COME_HAEIN : 398- 406: kvpll Gd--IpvikrL fskes GSPD_AERHY : 570- 578: kvpll Gd--IpvlgyL frsts GSPD_AERSA : 570- 578: kvpll Gd--IpvlgyL frstn GSPD_ECOLI : 568- 576: kvpll Gd--IplvgqL fryts GSPD_ERWCA : 552- 560: kvpll Gd--IpvlgyL frsns GSPD_ERWCH : 619- 627: kvpll Gd--IpwlgsL frskt GSPD_KLEPN : 564- 572: kvpll Gd--IpvigaL frsts GSPD_PSEAE : 574- 582: kvpll Gd--IpllgrL frstk GSPD_VIBCH : 335- 345: mlevi GqldIrraqvL ieali GSPD_VIBCH : 580- 588: kvpll Gd--IpllgqL frsts GSPD_XANCP : 694- 704: dsttd GsngIpflskL pvvga GSQD_ERWCH : 617- 625: kvpll Gd--IpwlgsL frsks HOFQ_ECOLI : 379- 387: svpll Gd--IpwfgqL frhdg HRA1_XANCV : 573- 583: lnaip GlskIplvgnL fkhrq HRPH_PSESY : 215- 224: dtrsh Ggs-IngmdlL grggr HRPH_PSESY : 216- 224: trshg Gs--IngmdlL grggr HRPH_PSESY : 484- 494: viaeh GslvIggfhgL eandk HRPH_PSESY : 507- 515: kvpll Gd--IpyigkL lfqsr INVG_SALTY : 327- 335: gtsws Gt--ItigdkL gvsln INVG_SALTY : 349- 359: istld GsrfIaavnaL eekkq MXID_SHIFL : 108- 117: yiyds Gel-IskvilL enisl MXID_SHIFL : 349- 359: istld GnkfIasvmaL nqkkk OMC_NEIGO : 406- 414: eiqkc Gr--IpqhpaL dnadt PILQ_PSEAE : 533- 543: atsgi GigfItdniiL dlqpv PILQ_PSEAE : 535- 543: sgigi Gf--ItdniiL dlqpv VG4_BPF1 : 244- 254: lssag GsfgIfngdvL glsvr VG4_BPFD : 244- 254: lssag GsfgIfngdvL glsvr VG4_BPI22 : 246- 256: lstag GsfgIfngniL alslq VG4_BPIKE : 255- 265: lstag GsfgIfngnvL alsiq VG4_BPM13 : 244- 254: lssag GsfgIfngdvL glsvr YSCC_YEREN : 479- 487: kvpll Gd--IpyigaL frrks I 9: 11.5102 56( 24) V-x(0,1)-L-x(0,1)-L Occurences: 56(24) COME_HAEIN : 320- 323: efrea V-LgL evtph COME_HAEIN : 394- 397: ksedk VpL-L gdipv GSPD_AERHY : 164- 166: ydpsn V-L-L itgra GSPD_AERHY : 507- 509: negds V-L-L tieqe GSPD_AERHY : 566- 569: eevsk VpL-L gdipv GSPD_AERSA : 164- 166: ydpsn V-L-L itgra GSPD_AERSA : 506- 508: negds V-L-L nieqe GSPD_AERSA : 566- 569: ekvsk VpL-L gdipv GSPD_ECOLI : 168- 171: yepsn V-LiL tgras GSPD_ECOLI : 433- 435: ngdwg V-L-L talas GSPD_ECOLI : 507- 509: negda V-L-L eieqe GSPD_ECOLI : 564- 567: eqvsk VpL-L gdipl GSPD_ERWCA : 8- 10: llsgs V-L-L massl GSPD_ERWCA : 488- 490: negds V-L-L eieqe GSPD_ERWCA : 548- 551: esank VpL-L gdipv GSPD_ERWCH : 17- 19: wlglt V-L-L lgspc GSPD_ERWCH : 17- 20: wlglt VlL-L gspcg GSPD_ERWCH : 17- 20: wlglt V-LlL gspcg GSPD_ERWCH : 166- 168: yepsn V-L-L mtgra GSPD_ERWCH : 555- 557: negds V-L-L qieqe GSPD_ERWCH : 615- 618: etnnk VpL-L gdipw GSPD_KLEPN : 166- 168: yepsn V-L-L mtgra GSPD_KLEPN : 500- 502: negds V-L-L eieqe GSPD_KLEPN : 560- 563: dtadk VpL-L gdipv GSPD_PSEAE : 21- 23: syvpa V-L-L slalg GSPD_PSEAE : 21- 25: syvpa VlLsL algiq GSPD_PSEAE : 336- 338: stnal V-L-L adpdt GSPD_PSEAE : 570- 573: qaesk VpL-L gdipl GSPD_VIBCH : 576- 579: esesk VpL-L gdipl GSPD_XANCP : 12- 15: prlfp VsL-L iglla GSQD_ERWCH : 17- 19: wlglt V-L-L lgspc GSQD_ERWCH : 17- 20: wlglt VlL-L gspcg GSQD_ERWCH : 17- 20: wlglt V-LlL gspcg GSQD_ERWCH : 166- 168: yepsn V-L-L mtgra GSQD_ERWCH : 553- 555: negds V-L-L qieqe GSQD_ERWCH : 613- 616: esndk VpL-L gdipw HOFQ_ECOLI : 58- 62: dvsgt VsLhL tdvpw HOFQ_ECOLI : 375- 378: sgqds VpL-L gdipw HRA1_XANCV : 18- 21: aplaa V-LmL sllpl HRPH_PSESY : 126- 129: taltd VgL-L dkrfg HRPH_PSESY : 503- 506: dkvhk VpL-L gdipy INVG_SALTY : 304- 308: vakrh VeLsL wivdl INVG_SALTY : 372- 374: vvsrp V-L-L tqenv MXID_SHIFL : 14- 16: ltlli V-L-L plivn MXID_SHIFL : 14- 18: ltlli VlLpL ivnan MXID_SHIFL : 114- 117: elisk ViL-L enisl OMC_NEIGO : 102- 105: srarl V-LnL nkpgq OMC_NEIGO : 604- 607: elkka V-LgL tvtan OMC_NEIGO : 677- 680: ntltk VpL-L atspl PILQ_PSEAE : 39- 43: lpgdr VeLkL qfdep PILQ_PSEAE : 296- 299: idvrs V-LqL iadft PILQ_PSEAE : 348- 350: rklgn V-L-L vapad VG4_BPF1 : 253- 256: ifngd V-LgL svral VG4_BPFD : 253- 256: ifngd V-LgL svral VG4_BPI22 : 148- 151: vrssd V-LpL akifv VG4_BPI22 : 418- 420: drtmf V-L-L tahvi VG4_BPIKE : 157- 160: vrssd V-LpL akifv VG4_BPIKE : 264- 267: ifngn V-LaL siqav VG4_BPIKE : 427- 429: ertmf V-L-L tahvi VG4_BPM13 : 253- 256: ifngd V-LgL svral YSCC_YEREN : 348- 351: yllar VnL-L enegs YSCC_YEREN : 475- 478: valsk VpL-L gdipy J 10: 11.5102 46( 24) V-x(1,2)-G-x(1,2)-V Occurences: 46(24) COME_HAEIN : 320- 325: efrea Vl-GleV tphis COME_HAEIN : 378- 382: dgeti Vl-Gg-V fhdti GSPD_AERHY : 85- 90: lsvld Vy-GfaV vpmdn GSPD_AERHY : 543- 549: knavl VksGetV vlggl GSPD_AERSA : 85- 90: lsvld Vy-GfaV vpmdn GSPD_AERSA : 543- 549: knavl VksGetV vlggl GSPD_ECOLI : 501- 507: kvtpq VneGdaV lleie GSPD_ECOLI : 541- 547: qnavl VktGetV vlggl GSPD_ERWCA : 78- 83: lsvld Vy-GftV ipmdn GSPD_ERWCA : 525- 531: nnavl VssGdtV vvggl GSPD_ERWCH : 87- 92: lsvld Vy-GfsV vpmdn GSPD_ERWCH : 357- 363: ggrti ViqGkeV tvrah GSPD_KLEPN : 87- 92: lsvld Vy-GfaV inmnn GSPD_KLEPN : 537- 543: nnavl VgsGetV vvggl GSPD_PSEAE : 83- 87: vvdpr Vk-Gq-V svvsk GSPD_VIBCH : 57- 61: ivdps Vr-Gk-V dvrsf GSPD_XANCP : 125- 129: viapg Vq-Gt-V tlatp GSPD_XANCP : 365- 369: sgpsl Vp-Gg-V vnmlg GSPD_XANCP : 365- 370: sgpsl VpgGv-V nmlgn GSPD_XANCP : 365- 370: sgpsl Vp-GgvV nmlgn GSPD_XANCP : 438- 443: svtle Ve-GdkV gvsav GSPD_XANCP : 533- 537: giwgd Vs-Gs-V tsngv GSQD_ERWCH : 87- 92: lsvld Vy-GfsV vpmdn GSQD_ERWCH : 265- 271: drkqv VqgGtkV iylky GSQD_ERWCH : 590- 596: nnavm VtnGetV vvggl HOFQ_ECOLI : 54- 58: vvspd Vs-Gt-V slhlt HOFQ_ECOLI : 301- 306: efkea Vl-GmeV tptvl HOFQ_ECOLI : 326- 330: hisqn Vp-Gq-V lqqad HRA1_XANCV : 531- 536: lgsnt Vd-GipV itsse HRPH_PSESY : 469- 474: dtqps VrkGn-V stqav INVG_SALTY : 149- 154: kgtfy Vs-GppV yvdmv MXID_SHIFL : 494- 498: lssip Vi-Gn-V fkykt OMC_NEIGO : 115- 120: qynte Vr-GnkV wifin OMC_NEIGO : 604- 609: elkka Vl-GltV tanit PILQ_PSEAE : 655- 659: dgeti Vi-Gg-V fsneq VG4_BPF1 : 52- 56: ivspd Vk-Gt-V tvyss VG4_BPF1 : 226- 230: sqrgt Va-Gg-V ntdrl VG4_BPF1 : 253- 258: ifngd Vl-GlsV ralkt VG4_BPFD : 52- 56: ivspd Vk-Gt-V tvyss VG4_BPFD : 226- 230: sqrgt Va-Gg-V ntdrl VG4_BPFD : 253- 258: ifngd Vl-GlsV ralkt VG4_BPI22 : 296- 300: qnvpf Vt-Gk-V tgeaa VG4_BPIKE : 124- 130: dsady VpvGdsV pvsaq VG4_BPIKE : 305- 309: qnvpf Vt-Gk-V tgeaa VG4_BPM13 : 52- 56: ivspd Vk-Gt-V tvyss VG4_BPM13 : 226- 230: sqrgt Va-Gg-V ntdrl VG4_BPM13 : 253- 258: ifngd Vl-GlsV ralkt YSCC_YEREN : 385- 390: tyyvk Vt-GkeV aelkg K 11: 11.5102 55( 24) V-x(0,1)-G-x(1,2)-V Occurences: 55(24) COME_HAEIN : 320- 325: efrea VlGleV tphis COME_HAEIN : 378- 382: dgeti VlGg-V fhdti GSPD_AERHY : 85- 90: lsvld VyGfaV vpmdn GSPD_AERHY : 463- 467: easfn V-GqeV pvqtg GSPD_AERSA : 85- 90: lsvld VyGfaV vpmdn GSPD_AERSA : 462- 466: easfn V-GqeV pvqsg GSPD_ECOLI : 157- 160: mdags V-Gn-V vhyep GSPD_ECOLI : 157- 161: mdags V-GnvV hyeps GSPD_ECOLI : 464- 468: lasfn V-GqdV pvlsg GSPD_ERWCA : 78- 83: lsvld VyGftV ipmdn GSPD_ERWCA : 445- 449: eatfn V-GqeV pvlag GSPD_ERWCH : 87- 92: lsvld VyGfsV vpmdn GSPD_ERWCH : 510- 514: eatfn V-GqeV pvltg GSPD_KLEPN : 87- 92: lsvld VyGfaV inmnn GSPD_KLEPN : 155- 158: ndnag V-Gs-V vhyep GSPD_KLEPN : 155- 159: ndnag V-GsvV hyeps GSPD_KLEPN : 457- 461: eatfn V-GqeV pvltg GSPD_PSEAE : 83- 87: vvdpr VkGq-V svvsk GSPD_PSEAE : 465- 469: kaeil V-GqnV pfqtg GSPD_VIBCH : 57- 61: ivdps VrGk-V dvrsf GSPD_VIBCH : 476- 480: easfi V-GeeV pvitg GSPD_XANCP : 125- 129: viapg VqGt-V tlatp GSPD_XANCP : 365- 369: sgpsl VpGg-V vnmlg GSPD_XANCP : 365- 370: sgpsl VpGgvV nmlgn GSPD_XANCP : 438- 443: svtle VeGdkV gvsav GSPD_XANCP : 533- 537: giwgd VsGs-V tsngv GSQD_ERWCH : 87- 92: lsvld VyGfsV vpmdn GSQD_ERWCH : 510- 514: eatfn V-GqeV pvltg HOFQ_ECOLI : 54- 58: vvspd VsGt-V slhlt HOFQ_ECOLI : 178- 181: qmdlp V-Gq-V elsah HOFQ_ECOLI : 213- 216: qhagg V-Gq-V ttlgs HOFQ_ECOLI : 301- 306: efkea VlGmeV tptvl HOFQ_ECOLI : 326- 330: hisqn VpGq-V lqqad HRA1_XANCV : 531- 536: lgsnt VdGipV itsse HRPH_PSESY : 710- 713: qrcsr V-Gg-V rypdr INVG_SALTY : 149- 154: kgtfy VsGppV yvdmv MXID_SHIFL : 494- 498: lssip ViGn-V fkykt OMC_NEIGO : 115- 120: qynte VrGnkV wifin OMC_NEIGO : 604- 609: elkka VlGltV tanit PILQ_PSEAE : 655- 659: dgeti ViGg-V fsneq VG4_BPF1 : 52- 56: ivspd VkGt-V tvyss VG4_BPF1 : 226- 230: sqrgt VaGg-V ntdrl VG4_BPF1 : 253- 258: ifngd VlGlsV ralkt VG4_BPF1 : 287- 291: kgsis V-GqnV pfitg VG4_BPFD : 52- 56: ivspd VkGt-V tvyss VG4_BPFD : 226- 230: sqrgt VaGg-V ntdrl VG4_BPFD : 253- 258: ifngd VlGlsV ralkt VG4_BPFD : 287- 291: kgsis V-GqnV pfitg VG4_BPI22 : 289- 293: sgyis V-GqnV pfvtg VG4_BPI22 : 296- 300: qnvpf VtGk-V tgeaa VG4_BPIKE : 126- 130: adyvp V-GdsV pvsaq VG4_BPIKE : 298- 302: tgyis V-GqnV pfvtg VG4_BPIKE : 305- 309: qnvpf VtGk-V tgeaa VG4_BPM13 : 52- 56: ivspd VkGt-V tvyss VG4_BPM13 : 226- 230: sqrgt VaGg-V ntdrl VG4_BPM13 : 253- 258: ifngd VlGlsV ralkt VG4_BPM13 : 287- 291: kgsis V-GqnV pfitg YSCC_YEREN : 385- 390: tyyvk VtGkeV aelkg L 12: 11.5102 41( 24) L-x(3)-L-x(1,3)-A Occurences: 41(24) COME_HAEIN : 41- 49: lsqap LaqtLeqlA fqqdv COME_HAEIN : 263- 269: ingrl LdleLs--A leren GSPD_AERHY : 143- 151: relap LlrqLndnA gggnv GSPD_AERSA : 143- 151: relap LlrqLndnA gggnv GSPD_ECOLI : 16- 24: itccl LaalLmpcA ghaen GSPD_ERWCA : 213- 219: deksa LpgmLt--A nvvad GSPD_ERWCH : 145- 153: rdlap LlrqLndnA gagtv GSPD_KLEPN : 145- 153: rdlap LlrqLndnA gvgsv GSPD_PSEAE : 5- 11: msqp LlraLf--A pssrs GSPD_PSEAE : 23- 31: vpavl LslaLgiqA ahaen GSPD_PSEAE : 435- 441: ssfga LvtaLs--A ntksn GSPD_VIBCH : 17- 24: lagsl LstpLam-A nefsa GSPD_VIBCH : 142- 150: relsp LlpqLidnA gagnv GSPD_XANCP : 14- 20: lfpvs LligLl--A gcatt GSPD_XANCP : 15- 23: fpvsl LiglLagcA ttppp GSQD_ERWCH : 145- 153: rdlap LlrqLndnA gagtv HOFQ_ECOLI : 219- 226: gqvtt LgsdLsv-A tatth HOFQ_ECOLI : 244- 250: ingrl LdleLs--A leqkq HOFQ_ECOLI : 266- 273: asprl LashLqp-A sikqg HRA1_XANCV : 23- 31: vlmls LlplLsphA daaqv HRA1_XANCV : 431- 438: pvggt LtavLgd-A grylm HRPH_PSESY : 11- 18: mwlpl LligLsp-A twavt HRPH_PSESY : 41- 49: arqte LataLadfA kefgm INVG_SALTY : 7- 14: kthil LarvLac-A alvlv INVG_SALTY : 7- 15: kthil LarvLacaA lvlvt INVG_SALTY : 254- 262: aggms LqeaLkqnA aagni INVG_SALTY : 293- 300: hfiem LvkaLdv-A krhve MXID_SHIFL : 125- 132: islny LiqyLkd-A nlydh OMC_NEIGO : 226- 233: tlpta LqrsLdv-A dfktp OMC_NEIGO : 457- 465: ekfrk LideLdvpA qqvmi OMC_NEIGO : 545- 551: dfsga LnleLs--A sesls PILQ_PSEAE : 8- 14: sglsr LgiaLl--A amfap PILQ_PSEAE : 8- 15: sglsr LgiaLla-A mfapa PILQ_PSEAE : 100- 106: kdrtr LiinLt--A lssyt PILQ_PSEAE : 345- 352: ldkrk LgnvLlv-A padei VG4_BPF1 : 235- 242: vntdr LtsvLss-A ggsfg VG4_BPFD : 235- 242: vntdr LtsvLss-A ggsfg VG4_BPI22 : 216- 223: sngvd LsfaLal-A sggkv VG4_BPI22 : 237- 244: fntsa LgtaLst-A ggsfg VG4_BPI22 : 256- 262: fngni LalsLq--A vqsds VG4_BPIKE : 246- 253: fntsa LgtaLst-A ggsfg VG4_BPM13 : 235- 242: vntdr LtsvLss-A ggsfg YSCC_YEREN : 215- 222: gvati LqrvLsd-A tiqqv M 13: 11.5102 43( 24) L-x(3,4)-L-x(2,3)-A Occurences: 43(24) COME_HAEIN : 41- 49: lsqap Laqt-LeqlA fqqdv GSPD_AERHY : 143- 151: relap Llrq-LndnA gggnv GSPD_AERSA : 143- 151: relap Llrq-LndnA gggnv GSPD_ECOLI : 15- 24: kitcc LlaalLmpcA ghaen GSPD_ECOLI : 16- 24: itccl Laal-LmpcA ghaen GSPD_ERWCA : 4- 12: mll LsgsvLlm-A sslaw GSPD_ERWCA : 10- 19: sgsvl LmassLawsA efsas GSPD_ERWCH : 145- 153: rdlap Llrq-LndnA gagtv GSPD_KLEPN : 145- 153: rdlap Llrq-LndnA gvgsv GSPD_PSEAE : 22- 31: yvpav LlslaLgiqA ahaen GSPD_PSEAE : 23- 31: vpavl Lsla-LgiqA ahaen GSPD_VIBCH : 16- 24: llags LlstpLam-A nefsa GSPD_VIBCH : 17- 24: lagsl Lstp-Lam-A nefsa GSPD_VIBCH : 142- 150: relsp Llpq-LidnA gagnv GSPD_XANCP : 14- 23: lfpvs LliglLagcA ttppp GSPD_XANCP : 15- 23: fpvsl Ligl-LagcA ttppp GSQD_ERWCH : 145- 153: rdlap Llrq-LndnA gagtv HOFQ_ECOLI : 219- 226: gqvtt Lgsd-Lsv-A tatth HOFQ_ECOLI : 265- 273: iaspr LlashLqp-A sikqg HOFQ_ECOLI : 266- 273: asprl Lash-Lqp-A sikqg HRA1_XANCV : 23- 31: vlmls Llpl-LsphA daaqv HRA1_XANCV : 431- 438: pvggt Ltav-Lgd-A grylm HRPH_PSESY : 10- 18: lmwlp LlligLsp-A twavt HRPH_PSESY : 11- 18: mwlpl Llig-Lsp-A twavt HRPH_PSESY : 41- 49: arqte Lata-LadfA kefgm INVG_SALTY : 6- 14: mkthi LlarvLac-A alvlv INVG_SALTY : 6- 15: mkthi LlarvLacaA lvlvt INVG_SALTY : 7- 14: kthil Larv-Lac-A alvlv INVG_SALTY : 7- 15: kthil Larv-LacaA lvlvt INVG_SALTY : 254- 262: aggms Lqea-LkqnA aagni INVG_SALTY : 293- 300: hfiem Lvka-Ldv-A krhve MXID_SHIFL : 125- 132: islny Liqy-Lkd-A nlydh OMC_NEIGO : 217- 225: hiivt LknhtLpt-A lqrsl OMC_NEIGO : 226- 233: tlpta Lqrs-Ldv-A dfktp OMC_NEIGO : 457- 465: ekfrk Lide-LdvpA qqvmi PILQ_PSEAE : 8- 15: sglsr Lgia-Lla-A mfapa PILQ_PSEAE : 345- 352: ldkrk Lgnv-Llv-A padei PILQ_PSEAE : 345- 354: ldkrk LgnvlLvapA deiaa VG4_BPF1 : 235- 242: vntdr Ltsv-Lss-A ggsfg VG4_BPFD : 235- 242: vntdr Ltsv-Lss-A ggsfg VG4_BPI22 : 77- 86: ffksv LnangLvvvA gnpav VG4_BPI22 : 216- 223: sngvd Lsfa-Lal-A sggkv VG4_BPI22 : 237- 244: fntsa Lgta-Lst-A ggsfg VG4_BPIKE : 246- 253: fntsa Lgta-Lst-A ggsfg VG4_BPM13 : 235- 242: vntdr Ltsv-Lss-A ggsfg YSCC_YEREN : 215- 222: gvati Lqrv-Lsd-A tiqqv N 14: 11.5102 56( 24) L-L-x(2,4)-L Occurences: 56(24) COME_HAEIN : 262- 267: kingr LLdle-L saler COME_HAEIN : 336- 340: kdnni LLdl--L vsqns GSPD_AERHY : 143- 147: relap LLrq--L ndnag GSPD_AERSA : 143- 147: relap LLrq--L ndnag GSPD_ECOLI : 15- 19: kitcc LLaa--L lmpca GSPD_ECOLI : 15- 20: kitcc LLaal-L mpcag GSPD_ECOLI : 258- 262: qrits LLks--L dvees GSPD_ECOLI : 434- 438: gdwgv LLta--L asnnk GSPD_ECOLI : 566- 572: vskvp LLgdipL vgqlf GSPD_ERWCA : 3- 9: ml LLsgsvL lmass GSPD_ERWCA : 9- 15: lsgsv LLmassL awsae GSPD_ERWCA : 616- 621: ngegg LLdnd-L lrlpe GSPD_ERWCA : 616- 622: ngegg LLdndlL rlpeg GSPD_ERWCH : 145- 149: rdlap LLrq--L ndnag GSPD_ERWCH : 480- 484: gnwsm LLta--L ssdgk GSPD_KLEPN : 14- 20: sfslt LLifaaL lfrpa GSPD_KLEPN : 145- 149: rdlap LLrq--L ndnag GSPD_KLEPN : 427- 431: gnwam LLta--L ssstk GSPD_PSEAE : 5- 9: msqp LLra--L fapss GSPD_PSEAE : 22- 27: yvpav LLsla-L giqaa GSPD_PSEAE : 406- 410: lsigt LLqs--L esnka GSPD_PSEAE : 447- 453: ntksn LLstpsL ltldn GSPD_PSEAE : 572- 578: eskvp LLgdipL lgrlf GSPD_PSEAE : 578- 582: lgdip LLgr--L frstk GSPD_VIBCH : 11- 16: kkssw LLags-L lstpl GSPD_VIBCH : 11- 17: kkssw LLagslL stpla GSPD_VIBCH : 16- 21: llags LLstp-L amane GSPD_VIBCH : 142- 146: relsp LLpq--L idnag GSPD_VIBCH : 578- 584: eskvp LLgdipL lgqlf GSPD_VIBCH : 584- 588: lgdip LLgq--L frsts GSPD_XANCP : 14- 18: lfpvs LLig--L lagca GSPD_XANCP : 14- 19: lfpvs LLigl-L agcat GSPD_XANCP : 145- 150: aqaln LLemv-L gwnna GSQD_ERWCH : 145- 149: rdlap LLrq--L ndnag GSQD_ERWCH : 480- 484: gnwsm LLta--L ssdsk HOFQ_ECOLI : 8- 12: qwiaa LLlm--L ipgvq HOFQ_ECOLI : 243- 248: ringr LLdle-L saleq HOFQ_ECOLI : 265- 270: iaspr LLash-L qpasi HRA1_XANCV : 23- 27: vlmls LLpl--L sphad HRPH_PSESY : 10- 15: lmwlp LLlig-L spatw HRPH_PSESY : 11- 15: mwlpl LLig--L spatw INVG_SALTY : 6- 11: mkthi LLarv-L acaal INVG_SALTY : 80- 84: hdpna LLek--L slqlg INVG_SALTY : 80- 86: hdpna LLeklsL qlgli MXID_SHIFL : 11- 15: ikslt LLiv--L lpliv MXID_SHIFL : 11- 16: ikslt LLivl-L plivn MXID_SHIFL : 89- 93: leklt LLvg--L iwykd MXID_SHIFL : 116- 122: iskvi LLenisL nyliq OMC_NEIGO : 679- 685: ltkvp LLatspL satsl PILQ_PSEAE : 21- 26: mfapa LLaad-L ekldv PILQ_PSEAE : 696- 700: drkne LLvf--L tprim VG4_BPF1 : 372- 377: rdgqt LLlgg-L tdykn VG4_BPF1 : 373- 377: dgqtl LLgg--L tdykn VG4_BPFD : 372- 377: rdgqt LLlgg-L tdykn VG4_BPFD : 373- 377: dgqtl LLgg--L tdykn VG4_BPI22 : 374- 379: kdgqt LLlgg-L issnq VG4_BPI22 : 375- 379: dgqtl LLgg--L issnq VG4_BPIKE : 383- 388: kdgqt LLlgg-L idsnt VG4_BPIKE : 384- 388: dgqtl LLgg--L idsnt VG4_BPM13 : 372- 377: rdgqt LLlgg-L tdykn VG4_BPM13 : 373- 377: dgqtl LLgg--L tdykn YSCC_YEREN : 344- 350: rgldy LLarvnL leneg O 15: 11.5102 63( 24) L-x(0,1)-L-x(1,2)-L Occurences: 63(24) COME_HAEIN : 262- 265: kingr L-Ld-L elsal COME_HAEIN : 263- 267: ingrl LdLe-L saler COME_HAEIN : 265- 270: grlld LeLsaL erenn COME_HAEIN : 336- 339: kdnni L-Ld-L lvsqn COME_HAEIN : 336- 340: kdnni L-LdlL vsqns GSPD_AERHY : 143- 147: relap L-LrqL ndnag GSPD_AERSA : 143- 147: relap L-LrqL ndnag GSPD_ECOLI : 15- 19: kitcc L-LaaL lmpca GSPD_ECOLI : 258- 262: qrits L-LksL dvees GSPD_ECOLI : 434- 438: gdwgv L-LtaL asnnk GSPD_ERWCA : 621- 624: lldnd L-Lr-L peggn GSPD_ERWCH : 13- 18: kswgw LgLtvL llgsp GSPD_ERWCH : 145- 149: rdlap L-LrqL ndnag GSPD_ERWCH : 480- 484: gnwsm L-LtaL ssdgk GSPD_ERWCH : 640- 644: mskrn LmLf-L rptii GSPD_KLEPN : 145- 149: rdlap L-LrqL ndnag GSPD_KLEPN : 427- 431: gnwam L-LtaL ssstk GSPD_PSEAE : 5- 9: msqp L-LraL fapss GSPD_PSEAE : 22- 25: yvpav L-Ls-L algiq GSPD_PSEAE : 23- 27: vpavl LsLa-L giqaa GSPD_PSEAE : 406- 410: lsigt L-LqsL esnka GSPD_PSEAE : 453- 456: lstps L-Lt-L dnqka GSPD_PSEAE : 578- 582: lgdip L-LgrL frstk GSPD_VIBCH : 142- 146: relsp L-LpqL idnag GSPD_VIBCH : 559- 564: qdgqm LvLggL idera GSPD_VIBCH : 584- 588: lgdip L-LgqL frsts GSPD_XANCP : 14- 18: lfpvs L-LigL lagca GSQD_ERWCH : 13- 18: kswgw LgLtvL llgsp GSQD_ERWCH : 145- 149: rdlap L-LrqL ndnag GSQD_ERWCH : 480- 484: gnwsm L-LtaL ssdsk GSQD_ERWCH : 638- 642: vrkrn LmLf-L rptii HOFQ_ECOLI : 8- 12: qwiaa LlLm-L ipgvq HOFQ_ECOLI : 8- 12: qwiaa L-LlmL ipgvq HOFQ_ECOLI : 9- 12: wiaal L-Lm-L ipgvq HOFQ_ECOLI : 243- 246: ringr L-Ld-L elsal HOFQ_ECOLI : 244- 248: ingrl LdLe-L saleq HOFQ_ECOLI : 246- 251: grlld LeLsaL eqkqq HRA1_XANCV : 19- 23: plaav LmLs-L lplls HRA1_XANCV : 19- 24: plaav LmLslL pllsp HRA1_XANCV : 21- 26: aavlm LsLlpL lspha HRA1_XANCV : 23- 26: vlmls L-Lp-L lspha HRA1_XANCV : 23- 27: vlmls L-LplL sphad HRPH_PSESY : 8- 12: kalmw LpLl-L iglsp HRPH_PSESY : 10- 15: lmwlp LlLigL spatw HRPH_PSESY : 11- 15: mwlpl L-LigL spatw INVG_SALTY : 80- 84: hdpna L-LekL slqlg INVG_SALTY : 84- 88: allek LsLq-L gliwy INVG_SALTY : 86- 90: lekls LqLg-L iwyfd MXID_SHIFL : 11- 15: ikslt L-LivL lpliv MXID_SHIFL : 15- 18: tlliv L-Lp-L ivnan MXID_SHIFL : 89- 93: leklt L-LvgL iwykd OMC_NEIGO : 101- 105: ssrar LvLn-L nkpgq OMC_NEIGO : 545- 549: dfsga LnLe-L sases PILQ_PSEAE : 331- 335: pwdqa LdLv-L ktkgl PILQ_PSEAE : 696- 700: drkne L-LvfL tprim VG4_BPF1 : 372- 377: rdgqt LlLggL tdykn VG4_BPF1 : 373- 377: dgqtl L-LggL tdykn VG4_BPFD : 372- 377: rdgqt LlLggL tdykn VG4_BPFD : 373- 377: dgqtl L-LggL tdykn VG4_BPI22 : 256- 260: fngni LaLs-L qavqs VG4_BPI22 : 374- 379: kdgqt LlLggL issnq VG4_BPI22 : 375- 379: dgqtl L-LggL issnq VG4_BPIKE : 383- 388: kdgqt LlLggL idsnt VG4_BPIKE : 384- 388: dgqtl L-LggL idsnt VG4_BPM13 : 372- 377: rdgqt LlLggL tdykn VG4_BPM13 : 373- 377: dgqtl L-LggL tdykn YSCC_YEREN : 17- 20: vltgt L-Ll-L ssysw P 16: 11.5102 45( 24) L-x(2,4)-A-L Occurences: 45(24) COME_HAEIN : 265- 270: grlld Lels-AL erenn GSPD_AERHY : 433- 437: gnwam Lvt--AL stntk GSPD_AERSA : 432- 436: gnwaa Lvt--AL ststk GSPD_ECOLI : 15- 19: kitcc Lla--AL lmpca GSPD_ECOLI : 434- 438: gdwgv Llt--AL asnnk GSPD_ERWCA : 415- 419: gnwgm Lmt--AL ssnsk GSPD_ERWCH : 274- 280: tkviy LkyakAL dliev GSPD_ERWCH : 480- 484: gnwsm Llt--AL ssdgk GSPD_KLEPN : 14- 20: sfslt LlifaAL lfrpa GSPD_KLEPN : 15- 20: fsltl Lifa-AL lfrpa GSPD_KLEPN : 405- 409: tvsss Las--AL ssfng GSPD_KLEPN : 427- 431: gnwam Llt--AL ssstk GSPD_PSEAE : 5- 9: msqp Llr--AL fapss GSPD_PSEAE : 22- 27: yvpav Llsl-AL giqaa GSPD_PSEAE : 23- 27: vpavl Lsl--AL giqaa GSPD_PSEAE : 435- 439: ssfga Lvt--AL santk GSPD_VIBCH : 345- 349: rraqv Lie--AL ivema GSPD_VIBCH : 424- 428: gdytk Las--AL ssiqg GSPD_VIBCH : 564- 570: lvlgg LiderAL esesk GSPD_XANCP : 704- 710: pflsk LpvvgAL fgrkt GSQD_ERWCH : 274- 280: tkviy LkyakAL dliev GSQD_ERWCH : 480- 484: gnwsm Llt--AL ssdsk HOFQ_ECOLI : 246- 251: grlld Lels-AL eqkqq HRA1_XANCV : 130- 134: astks Lrd--AL armrl HRA1_XANCV : 409- 415: grggq LgfngAL sgaat HRPH_PSESY : 41- 45: arqte Lat--AL adfak HRPH_PSESY : 119- 123: davdd Lqt--AL tdvgl HRPH_PSESY : 251- 256: msssg Ldtn-AL eqgld INVG_SALTY : 11- 16: llarv Laca-AL vlvtp INVG_SALTY : 254- 258: aggms Lqe--AL kqnaa INVG_SALTY : 293- 297: hfiem Lvk--AL dvakr MXID_SHIFL : 218- 224: vverl LnngkAL snrqa OMC_NEIGO : 222- 226: lknht Lpt--AL qrsld PILQ_PSEAE : 8- 12: sglsr Lgi--AL laamf PILQ_PSEAE : 29- 34: adlek Ldva-AL pgdrv PILQ_PSEAE : 207- 211: faktq Lpd--AL rvrld VG4_BPF1 : 256- 261: gdvlg Lsvr-AL ktnsh VG4_BPFD : 256- 261: gdvlg Lsvr-AL ktnsh VG4_BPI22 : 216- 220: sngvd Lsf--AL alasg VG4_BPI22 : 216- 222: sngvd LsfalAL asggk VG4_BPI22 : 237- 241: fntsa Lgt--AL stagg VG4_BPIKE : 246- 250: fntsa Lgt--AL stagg VG4_BPM13 : 256- 261: gdvlg Lsvr-AL ktnsh YSCC_YEREN : 124- 128: seaae Lkq--AL qrsgi YSCC_YEREN : 271- 275: pmyqr Lih--AL dkpsa YSCC_YEREN : 468- 472: iyrde Lsv--AL skvpl Q 17: 11.5102 55( 24) G-x(3,5)-G-x(3)-G Occurences: 55(24) COME_HAEIN : 95- 105: lnkdd GiyylnGsqsG kgqva COME_HAEIN : 101- 111: iyyln GsqsgkGqvaG nlttn GSPD_AERHY : 420- 428: aenfn Gmaa--GfyqG nwaml GSPD_AERSA : 419- 427: akgfn Gmaa--GfyhG nwaal GSPD_ECOLI : 421- 429: fsayn Gmaa--GffnG dwgvl GSPD_ERWCA : 398- 406: attal Ggfn--GiaaG fyqgn GSPD_ERWCA : 402- 410: lggfn Giaa--GfyqG nwgml GSPD_ERWCH : 467- 475: lsnfn Gita--GfyrG nwsml GSPD_KLEPN : 414- 422: lssfn Giaa--GfyqG nwaml GSPD_PSEAE : 304- 313: gqise Gmknn-GgqgG eqtgg GSPD_PSEAE : 309- 317: gmknn Ggqg--GeqtG ggrps GSPD_VIBCH : 356- 366: vemae GdginlGvqwG slesg GSPD_VIBCH : 358- 366: maegd Ginl--GvqwG slesg GSPD_XANCP : 352- 361: lsevf Ggrgn-GgnsG pslvp GSPD_XANCP : 353- 361: sevfg Grgn--GgnsG pslvp GSPD_XANCP : 368- 378: slvpg GvvnmlGnnsG gadrd GSPD_XANCP : 387- 395: rdesl Gsss--GatgG diggt GSPD_XANCP : 391- 399: lgsss Gatg--GdigG tsngs GSPD_XANCP : 394- 403: ssgat Ggdig-GtsnG ssqsg GSPD_XANCP : 395- 403: sgatg Gdig--GtsnG ssqsg GSPD_XANCP : 408- 418: gssqs GtsgsfGgssG sgmlq GSPD_XANCP : 526- 535: lpsaa Grgiw-GdvsG svtsn GSQD_ERWCH : 467- 475: lssfn Gvta--GfyrG nwsml HOFQ_ECOLI : 233- 241: atthv Gfni--GrinG rlldl HRA1_XANCV : 253- 262: ssntf Gnaaq-GqggG asgil HRA1_XANCV : 402- 410: tdiqt Gdgr--GgqlG fngal HRA1_XANCV : 407- 417: gdgrg GqlgfnGalsG aatdg HRPH_PSESY : 227- 236: dllgr Ggrgn-GlagG gspdt HRPH_PSESY : 228- 236: llgrg Grgn--GlagG gspdt HRPH_PSESY : 484- 493: viaeh Gslvi-GgfhG leand HRPH_PSESY : 588- 597: tqmvd Gaape-GmhdG etlpf INVG_SALTY : 327- 336: gtsws Gtiti-GdklG vslnq MXID_SHIFL : 324- 333: gvnwq Gtasf-GdsfG asfnm OMC_NEIGO : 168- 176: rtvqp Gktt--GsgiG ktnqy OMC_NEIGO : 480- 490: veaad GfsrdlGvkfG atgrk OMC_NEIGO : 505- 515: etsaf GwgvnsGfggG dkwea OMC_NEIGO : 507- 515: safgw Gvns--GfggG dkwea PILQ_PSEAE : 462- 472: veanv GydkslGvrwG gayhk PILQ_PSEAE : 472- 482: lgvrw GgayhkGnwsG ygkdg PILQ_PSEAE : 473- 482: gvrwg Gayhk-GnwsG ygkdg PILQ_PSEAE : 490- 500: kdgni GikdedGmncG piags PILQ_PSEAE : 496- 504: ikded Gmnc--GpiaG sctfp VG4_BPF1 : 220- 228: fsfaa Gsqr--GtvaG gvntd VG4_BPF1 : 243- 251: vlssa Ggsf--GifnG dvlgl VG4_BPF1 : 247- 255: aggsf Gifn--GdvlG lsvra VG4_BPFD : 220- 228: fsfaa Gsqr--GtvaG gvntd VG4_BPFD : 243- 251: vlssa Ggsf--GifnG dvlgl VG4_BPFD : 247- 255: aggsf Gifn--GdvlG lsvra VG4_BPI22 : 245- 253: alsta Ggsf--GifnG nilal VG4_BPIKE : 89- 99: vlnan GfvlmaGdpsG vstps VG4_BPIKE : 254- 262: alsta Ggsf--GifnG nvlal VG4_BPM13 : 220- 228: fsfaa Gsqr--GtvaG gvntd VG4_BPM13 : 243- 251: vlssa Ggsf--GifnG dvlgl VG4_BPM13 : 247- 255: aggsf Gifn--GdvlG lsvra YSCC_YEREN : 300- 310: qltel GvdwrvGirtG nnhqv R 18: 11.5102 54( 24) V-x(0,1)-A-x(3,4)-T Occurences: 54(24) COME_HAEIN : 21- 27: clpli VfAnpk-T dnerf COME_HAEIN : 109- 114: sgkgq V-Agnl-T tneph COME_HAEIN : 109- 115: sgkgq V-AgnltT nephl COME_HAEIN : 221- 226: enarr V-Agsl-T gnsfe COME_HAEIN : 369- 376: eintq VfAkdgeT ivlgg GSPD_AERHY : 231- 237: llapk VvAder-T nsvvv GSPD_AERHY : 232- 237: lapkv V-Ader-T nsvvv GSPD_AERHY : 434- 441: nwaml VtAlstnT ksdil GSPD_AERSA : 231- 237: llapk VvAder-T nsvvv GSPD_AERSA : 232- 237: lapkv V-Ader-T nsvvv GSPD_AERSA : 433- 440: nwaal VtAlstsT ksdil GSPD_AERSA : 517- 523: qevss V-AqkqaT gtadl GSPD_ECOLI : 235- 240: lsaki V-Adkr-T nslii GSPD_ECOLI : 378- 384: wankn VgAqqf-T ntglp GSPD_ERWCA : 221- 227: mltan VvAder-T nsaag GSPD_ERWCA : 222- 227: ltanv V-Ader-T nsaag GSPD_ERWCA : 451- 457: gqevp VlAgsq-T tsgdn GSPD_ERWCA : 451- 458: gqevp VlAgsqtT sgdnv GSPD_ERWCH : 231- 237: tmlan VvAdgr-T nsvvv GSPD_ERWCH : 232- 237: mlanv V-Adgr-T nsvvv GSPD_ERWCH : 264- 269: ldrkq V-Aqgg-T kviyl GSPD_ERWCH : 285- 291: ldlie VlAgng-T sgnrn GSPD_ERWCH : 365- 371: gkevt VrAhdq-T nslii GSPD_KLEPN : 231- 237: smvan VvAder-T navlv GSPD_KLEPN : 232- 237: mvanv V-Ader-T navlv GSPD_PSEAE : 243- 249: aagaq ViAdar-T nrlii GSPD_PSEAE : 436- 443: sfgal VtAlsanT ksnll GSPD_VIBCH : 208- 214: emvri VeAlnk-T tdaqn GSPD_VIBCH : 208- 215: emvri VeAlnktT daqnt GSPD_VIBCH : 229- 234: lkpkf V-Ader-T nsili GSPD_VIBCH : 614- 620: iirdg VtAdgi-T qrkyn GSPD_XANCP : 40- 46: rldpq VgAaga-T qttae GSPD_XANCP : 445- 451: gdkvg VsAvae-T ntllv GSPD_XANCP : 448- 453: vgvsa V-Aetn-T llvrt GSQD_ERWCH : 231- 237: tmlan VvAdgr-T nsvvv GSQD_ERWCH : 232- 237: mlanv V-Adgr-T nsvvv GSQD_ERWCH : 285- 291: ldlie VlAgng-T sgnrn GSQD_ERWCH : 365- 371: gkevt VrAhdq-T nslii HOFQ_ECOLI : 225- 230: gsdls V-Atat-T hvgfn HRA1_XANCV : 446- 452: ylmtr VsAlet-T nkaki HRPH_PSESY : 634- 640: wgvav VvArnn-T dkpvr HRPH_PSESY : 635- 640: gvavv V-Arnn-T dkpvr INVG_SALTY : 270- 275: gniki V-Aypd-T nsllv INVG_SALTY : 399- 405: igern V-AlehvT ygtmi MXID_SHIFL : 39- 44: diaky V-Aqsd-T vgsff MXID_SHIFL : 162- 167: alvel V-Anta-T lldkq OMC_NEIGO : 139- 145: parpa VkAalr-T gkttg OMC_NEIGO : 232- 237: qrsld V-Adfk-T pvqkv PILQ_PSEAE : 49- 56: qfdep VaAprgyT ieqpa PILQ_PSEAE : 92- 98: rsvtv VeAkdr-T rliin VG4_BPF1 : 226- 232: sqrgt V-AggvnT drlts VG4_BPFD : 226- 232: sqrgt V-AggvnT drlts VG4_BPI22 : 10- 16: fakfi V-AlfafT yfsaf VG4_BPI22 : 228- 234: asggk V-AggfnT salgt VG4_BPIKE : 237- 243: asgdk V-AggfnT salgt VG4_BPM13 : 226- 232: sqrgt V-AggvnT drlts YSCC_YEREN : 206- 213: yrdde VaApgvaT ilqrv S 19: 11.5102 45( 24) S-x(0,1)-L-x(0,1)-V Occurences: 45(24) COME_HAEIN : 159- 163: tfddr SnLlV iqdep GSPD_AERHY : 81- 85: yqffl SvLdV ygfav GSPD_AERSA : 81- 85: yqffl SvLdV ygfav GSPD_ECOLI : 261- 264: tsllk S-LdV eesee GSPD_ECOLI : 325- 327: deqtn S-L-V itadq GSPD_ERWCA : 74- 78: yqffl SvLdV ygftv GSPD_ERWCA : 308- 311: heqtn S-LiV naapd GSPD_ERWCH : 83- 87: yqffl SvLdV ygfsv GSPD_ERWCH : 575- 579: ngssn SsLgV tfntr GSPD_ERWCH : 576- 579: gssns S-LgV tfntr GSPD_KLEPN : 83- 87: yqffl SvLdV ygfav GSPD_KLEPN : 280- 283: kyaka SdL-V evltg GSPD_PSEAE : 498- 501: kdigv S-LkV tphin GSPD_VIBCH : 80- 84: ysffl SvLeV ygfaa GSPD_VIBCH : 317- 319: hadtn S-L-V ltapq GSPD_XANCP : 363- 365: gnsgp S-L-V pggvv GSPD_XANCP : 702- 706: gipfl SkLpV vgalf GSQD_ERWCH : 83- 87: yqffl SvLdV ygfsv GSQD_ERWCH : 573- 577: nsstn SsLgV tfntr GSQD_ERWCH : 574- 577: sstns S-LgV tfntr HOFQ_ECOLI : 221- 225: vttlg SdLsV atatt HRA1_XANCV : 499- 502: lsagv S-LrV lpsvv HRPH_PSESY : 430- 433: itagt S-LqV tprsl HRPH_PSESY : 485- 487: iaehg S-L-V iggfh INVG_SALTY : 277- 280: ypdtn SlL-V kgtae INVG_SALTY : 277- 280: ypdtn S-LlV kgtae INVG_SALTY : 466- 469: vphgk SlL-V ggytr INVG_SALTY : 466- 469: vphgk S-LlV ggytr MXID_SHIFL : 274- 277: ypetn SiL-V kgndq MXID_SHIFL : 392- 394: rtfyv S-L-V gerns MXID_SHIFL : 559- 561: ledek S-L-V sylny OMC_NEIGO : 10- 14: ltkii SgLfV ataaf OMC_NEIGO : 229- 232: talqr S-LdV adfkt PILQ_PSEAE : 466- 469: vgydk S-LgV rwgga PILQ_PSEAE : 601- 604: keaal S-LeV tpqit VG4_BPF1 : 169- 173: lsvdg SnLlV vsapk VG4_BPF1 : 412- 416: dsnee StLyV lvkat VG4_BPFD : 169- 173: lsvdg SnLlV vsapk VG4_BPFD : 412- 416: dsnee StLyV lvkat VG4_BPI22 : 172- 174: ypgnn S-L-V vsgsa VG4_BPI22 : 172- 175: ypgnn S-LvV sgsaq VG4_BPI22 : 322- 325: rdvgv S-LkV tpvvm VG4_BPIKE : 181- 184: ypgnn SlL-V sgsaa VG4_BPIKE : 181- 184: ypgnn S-LlV sgsaa VG4_BPIKE : 218- 220: lmfet S-L-V ngvdl VG4_BPIKE : 331- 334: rdvgv S-LkV tpvvm VG4_BPM13 : 169- 173: lsidg SnLlV vsapk VG4_BPM13 : 412- 416: dsnee StLyV lvkat YSCC_YEREN : 334- 336: ngalg S-L-V dargl T 20: 11.5102 36( 24) L-x(3,4)-V-x(2,3)-L Occurences: 36(24) COME_HAEIN : 397- 406: dkvpl LgdipVikrL fskes GSPD_AERHY : 340- 347: dvmae Leqv-Vak-L dirra GSPD_AERHY : 569- 578: skvpl LgdipVlgyL frsts GSPD_AERSA : 339- 346: dvmae Leqv-Vak-L dirra GSPD_AERSA : 569- 578: skvpl LgdipVlgyL frstn GSPD_ECOLI : 89- 97: lsild LygysVit-L dngfl GSPD_ERWCA : 551- 560: nkvpl LgdipVlgyL frsns GSPD_ERWCH : 13- 20: kswgw Lglt-Vll-L gspcg GSPD_ERWCH : 127- 134: gvgde Lvtr-Vvp-L nnvaa GSPD_KLEPN : 563- 572: dkvpl LgdipVigaL frsts GSPD_PSEAE : 95- 103: vskaq LslseVyq-L flsvm GSPD_PSEAE : 347- 354: dtvna Ledi-Vrq-L dvpra GSPD_VIBCH : 642- 650: kglrl LddasVpv-L pkfgd GSPD_XANCP : 364- 373: nsgps LvpggVvnmL gnnsg GSPD_XANCP : 701- 710: ngipf LsklpVvgaL fgrkt GSQD_ERWCH : 13- 20: kswgw Lglt-Vll-L gspcg GSQD_ERWCH : 127- 134: gigde Lvtr-Vvp-L nnvaa HOFQ_ECOLI : 195- 204: ineks LrelgVkwtL adaqh HRA1_XANCV : 442- 449: dagry Lmtr-Vsa-L ettnk HRPH_PSESY : 196- 205: yrdqq LvvagVasiL qdlld INVG_SALTY : 546- 554: sgddk Lqkw-VrvyL drgqe MXID_SHIFL : 9- 18: fniks LtlliVllpL ivnan MXID_SHIFL : 110- 117: ydsge Lisk-Vil-L enisl OMC_NEIGO : 600- 607: stnte Lkka-Vlg-L tvtan PILQ_PSEAE : 26- 34: llaad LekldVaa-L pgdrv PILQ_PSEAE : 34- 43: ldvaa LpgdrVelkL qfdep PILQ_PSEAE : 65- 74: paria LdlpgVqnkL gtknr PILQ_PSEAE : 436- 443: erlde Lrri-Vsq-L dipvr VG4_BPF1 : 254- 261: fngdv Lgls-Vra-L ktnsh VG4_BPFD : 254- 261: fngdv Lgls-Vra-L ktnsh VG4_BPI22 : 419- 428: rtmfv LltahViraL VG4_BPI22 : 420- 428: tmfvl Ltah-ViraL VG4_BPIKE : 428- 437: rtmfv LltahVikaL VG4_BPIKE : 429- 437: tmfvl Ltah-VikaL VG4_BPM13 : 254- 261: fngdv Lgls-Vra-L ktnsh YSCC_YEREN : 344- 351: rgldy Llar-Vnl-L enegs Number of patterns evaluated by Pratt:7442 Total running time: 21 seconds