------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file T2SP_C PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename T2SP_C.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GSPC_AERHY 290 GSPC_AERSA 290 GSPC_ECOLI 271 GSPC_ERWCA 285 GSPC_ERWCH 272 GSPC_KLEPN 285 GSPC_VIBCH 305 GSQC_ERWCH 272 Pratt run started at Thu Feb 6 21:20:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 35.5305 8( 8) G-x(4)-P-x(0,2)-G-x(3,5)-F-x(4)-L-x(3)-D-x-A-x(3)-N-x(3)-L 2: 31.3604 8( 8) P-x(0,2)-G-x(3,5)-F-x(4)-L-x(3)-D-x-A-x(3)-N-x(3)-L 3: 24.0203 8( 8) F-x(3,4)-L-x(3,4)-D-x-A-x(3)-N-x(3)-L 4: 24.0203 8( 8) F-x(4)-L-x(3)-D-x-A-x(3)-N-x(1,3)-L 5: 19.8503 8( 8) L-x(3)-D-x-A-x(3)-N-x(1,3)-L 6: 19.3503 9( 8) L-x(3,4)-D-x-A-x(3)-N-x(1,3)-L 7: 19.3503 8( 8) L-N-G-x(1,2)-L-x(1,3)-D 8: 19.3503 12( 8) A-x(0,2)-L-N-G-x(1,2)-L 9: 16.1802 9( 8) D-x(0,1)-A-x(3)-N-x(3)-L 10: 16.1802 8( 8) T-x(2)-R-x-G-x(0,1)-Q 11: 15.6802 14( 8) L-x(1,2)-L-x(0,1)-L-x(5)-A 12: 15.6802 14( 8) L-x(2)-L-x(0,1)-L-x(4,5)-A 13: 15.6802 8( 8) D-x-A-x(3)-N-x(1,3)-L 14: 15.6802 9( 8) D-x(0,1)-A-x(2,3)-N-x(3)-L 15: 15.6802 8( 8) N-G-x(2)-L-x(1,3)-D 16: 15.6802 8( 8) T-x(0,1)-V-x(2,3)-G-Q 17: 15.1802 9( 8) A-x(3,4)-N-x-L-x(1,3)-L 18: 15.1802 8( 8) R-x(0,1)-D-G-x(3,5)-Y 19: 15.1802 8( 8) D-x(4,5)-N-x(1,3)-L-x-D 20: 15.1802 10( 8) T-x(0,1)-V-x(0,2)-E-x(2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 88.6253 8( 8) G-x-[QR]-[LV]-[NS]-P-x(0,2)-G-x(3,5)-F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT] B 2: 87.4631 8( 8) F-x(3,4)-L-x(3,4)-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G C 3: 80.3741 8( 8) D-x(0,1)-A-x(3)-N-[DGN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G-x(4)-[IV]-x-[ILMV]-[AEGQS]-[FLV] D 4: 79.8741 8( 8) D-x(0,1)-A-x(2,3)-N-[DGN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G-x(4)-[IV]-x-[ILMV]-[AEGQS]-[FLV] E 5: 79.7445 8( 8) P-x(0,2)-G-x(3,5)-F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV] F 6: 49.4118 8( 8) F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] G 7: 42.0715 8( 8) L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] H 8: 38.2984 9( 8) L-x(3,4)-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] I 9: 34.6283 8( 8) D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] J 10: 32.1723 8( 8) T-[PV]-x-R-[DQ]-G-x(0,1)-Q-x(2)-[DGV]-[ILV]-x-[ILMV]-[AEGNQ] K 11: 30.8255 8( 8) N-G-[ILM]-[DV]-L-x(1,3)-D-x-[ADENT]-x(4)-[AILV]-x-[AEQ]-x(3)-[DEGQ] L 12: 27.3773 12( 8) A-x(0,2)-L-N-G-x(1,2)-L-x-[DS]-x-[DEN]-x(4)-[AILV] M 13: 26.1680 8( 8) L-N-G-x(1,2)-L-x(1,3)-D-x-[ADENT]-x(4)-[AILV]-x-[AEQ] N 14: 24.2561 8( 8) G-x-[QR]-[LV]-[NS]-P-x(0,2)-G-x(3,5)-F O 15: 24.0206 10( 8) T-x(0,1)-V-x(0,2)-E-x(2)-G-x(3)-[DK]-[IV]-x-[ILMV] P 16: 20.7991 8( 8) T-x(0,1)-V-x(2,3)-G-Q-x(2)-[DN]-x(3)-[AEGNQ] Q 17: 18.8505 10( 8) L-x-[GL]-L-x(0,1)-L-x(4,5)-A R 18: 18.3544 14( 8) L-x(1,2)-L-x(0,1)-L-x(3)-[AEQ]-x-A S 19: 17.4209 8( 8) A-x(3,4)-N-x-L-x(1,3)-L-x(3)-[ADEN] T 20: 15.6802 8( 8) N-G-x(2)-L-x(1,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 88.6253 8( 8) G-x-[QR]-[LV]-[NS]-P-x(0,2)-G-x(3,5)-F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT] Occurences: 8(8) GSPC_AERHY : 221- 267: dgrmv GyRLNP--GsnpelFnqlGLvaNDMAVsINGLDLrDnAqamqAMQqVaG atemt GSPC_AERSA : 221- 267: dgrmv GyRLNP--GsnpelFnqlGLvaNDMAVsINGLDLrDnAqamqAMQqVaG atemt GSPC_ECOLI : 189- 235: geqiy GlRLNPrkGlna--FttsLLqpGDIALrINNLSLtHpDevsqALSlLlT qqsaq GSPC_ERWCA : 214- 260: eevlk GyQLNP--GknpdlFyraGLqdNDLAVsLNGMDLrDaDqaqqAMAqLaG mskfn GSPC_ERWCH : 201- 247: dnklh GyRLNP--GpksdsFyrvGLqdNDMAVaLNGLDLrDeEqakkAMErMaD vhnft GSPC_KLEPN : 215- 261: ndkls GyRLNP--GkdpalFrqsGLreNDLAIaLNGLDLrDkEqarqVLAqLpE lteit GSPC_VIBCH : 238- 284: ddkvl GyRVSP--GkdpvlFesiGLqdGDMAVaLNGLDLtDpNvmntLFQsMnE mtems GSQC_ERWCH : 201- 247: dnklq GyRLNP--GpksdsFyrvGLqdNDMAVaLNGLDLrDaEqakkAMErMaD vhnft B 2: 87.4631 8( 8) F-x(3,4)-L-x(3,4)-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G Occurences: 8(8) GSPC_AERHY : 233- 279: snpel FnqlgLvan-DMAVsINGLDLrDnAqamqAMQqVaGatemTVTVERQG qlydv GSPC_AERSA : 233- 279: snpel FnqlgLvan-DMAVsINGLDLrDnAqamqAMQqVaGatemTVTVERQG qlydv GSPC_ECOLI : 201- 247: kglna FttslLqpg-DIALrINNLSLtHpDevsqALSlLlTqqsaQFTIRRNG vprli GSPC_ECOLI : 201- 247: kglna Ftts-LlqpgDIALrINNLSLtHpDevsqALSlLlTqqsaQFTIRRNG vprli GSPC_ERWCA : 226- 272: knpdl FyragLqdn-DLAVsLNGMDLrDaDqaqqAMAqLaGmskfNLTVERDG qqqdi GSPC_ERWCH : 213- 259: pksds FyrvgLqdn-DMAVaLNGLDLrDeEqakkAMErMaDvhnfTLTVERDG qrqdi GSPC_KLEPN : 227- 273: kdpal FrqsgLren-DLAIaLNGLDLrDkEqarqVLAqLpElteiTLTVERDG qkndi GSPC_VIBCH : 250- 296: kdpvl FesigLqdg-DMAVaLNGLDLtDpNvmntLFQsMnEmtemSLTVERDG qqhdv GSQC_ERWCH : 213- 259: pksds FyrvgLqdn-DMAVaLNGLDLrDaEqakkAMErMaDvhnfTLTVERDG qrqdi C 3: 80.3741 8( 8) D-x(0,1)-A-x(3)-N-[DGN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G-x(4)-[IV]-x-[ILMV]-[AEGQS]-[FLV] Occurences: 8(8) GSPC_AERHY : 242- 288: glvan DmAvsiNGLDLrDnAqamqAMQqVaGatemTVTVERQGqlydVyVGL se GSPC_AERSA : 242- 288: glvan DmAvsiNGLDLrDnAqamqAMQqVaGatemTVTVERQGqlydVyVGL se GSPC_ECOLI : 210- 256: llqpg DiAlriNNLSLtHpDevsqALSlLlTqqsaQFTIRRNGvprlInVSV geltg GSPC_ERWCA : 235- 281: glqdn DlAvslNGMDLrDaDqaqqAMAqLaGmskfNLTVERDGqqqdIyLAL dgdh GSPC_ERWCH : 222- 268: glqdn DmAvalNGLDLrDeEqakkAMErMaDvhnfTLTVERDGqrqdIyMEF ggde GSPC_KLEPN : 236- 282: glren DlAialNGLDLrDkEqarqVLAqLpElteiTLTVERDGqkndIyLAL rde GSPC_VIBCH : 259- 305: glqdg DmAvalNGLDLtDpNvmntLFQsMnEmtemSLTVERDGqqhdVyIQF GSQC_ERWCH : 222- 268: glqdn DmAvalNGLDLrDaEqakkAMErMaDvhnfTLTVERDGqrqdIyMEF ggde D 4: 79.8741 8( 8) D-x(0,1)-A-x(2,3)-N-[DGN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV]-T-[IV]-[ER]-R-[DNQ]-G-x(4)-[IV]-x-[ILMV]-[AEGQS]-[FLV] Occurences: 8(8) GSPC_AERHY : 242- 288: glvan DmAvsiNGLDLrDnAqamqAMQqVaGatemTVTVERQGqlydVyVGL se GSPC_AERSA : 242- 288: glvan DmAvsiNGLDLrDnAqamqAMQqVaGatemTVTVERQGqlydVyVGL se GSPC_ECOLI : 210- 256: llqpg DiAlriNNLSLtHpDevsqALSlLlTqqsaQFTIRRNGvprlInVSV geltg GSPC_ERWCA : 235- 281: glqdn DlAvslNGMDLrDaDqaqqAMAqLaGmskfNLTVERDGqqqdIyLAL dgdh GSPC_ERWCH : 222- 268: glqdn DmAvalNGLDLrDeEqakkAMErMaDvhnfTLTVERDGqrqdIyMEF ggde GSPC_KLEPN : 236- 282: glren DlAialNGLDLrDkEqarqVLAqLpElteiTLTVERDGqkndIyLAL rde GSPC_VIBCH : 259- 305: glqdg DmAvalNGLDLtDpNvmntLFQsMnEmtemSLTVERDGqqhdVyIQF GSQC_ERWCH : 222- 268: glqdn DmAvalNGLDLrDaEqakkAMErMaDvhnfTLTVERDGqrqdIyMEF ggde E 5: 79.7445 8( 8) P-x(0,2)-G-x(3,5)-F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-[GN]-[LM]-[DS]-L-x-[DH]-x-[ADEN]-x(4)-[ALV]-[FLM]-[AEQS]-x-[LMV]-x-[DEGT]-x(4)-[NQST]-[FLV] Occurences: 8(8) GSPC_AERHY : 226- 273: gyrln P--GsnpelFnqlGLvaNDMAVsINGLDLrDnAqamqAMQqVaGatemTV tverq GSPC_AERSA : 226- 273: gyrln P--GsnpelFnqlGLvaNDMAVsINGLDLrDnAqamqAMQqVaGatemTV tverq GSPC_ECOLI : 194- 241: glrln PrkGlna--FttsLLqpGDIALrINNLSLtHpDevsqALSlLlTqqsaQF tirrn GSPC_ERWCA : 219- 266: gyqln P--GknpdlFyraGLqdNDLAVsLNGMDLrDaDqaqqAMAqLaGmskfNL tverd GSPC_ERWCH : 206- 253: gyrln P--GpksdsFyrvGLqdNDMAVaLNGLDLrDeEqakkAMErMaDvhnfTL tverd GSPC_KLEPN : 220- 267: gyrln P--GkdpalFrqsGLreNDLAIaLNGLDLrDkEqarqVLAqLpElteiTL tverd GSPC_VIBCH : 243- 290: gyrvs P--GkdpvlFesiGLqdGDMAVaLNGLDLtDpNvmntLFQsMnEmtemSL tverd GSQC_ERWCH : 206- 253: gyrln P--GpksdsFyrvGLqdNDMAVaLNGLDLrDaEqakkAMErMaDvhnfTL tverd F 6: 49.4118 8( 8) F-x(3)-[GL]-L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] Occurences: 8(8) GSPC_AERHY : 233- 261: snpel FnqlGLvaNDMAVsINgldLRdnaQAmqA mqqva GSPC_AERSA : 233- 261: snpel FnqlGLvaNDMAVsINgldLRdnaQAmqA mqqva GSPC_ECOLI : 201- 227: kglna FttsLLqpGDIALrINn--LSlthPDevS qalsl GSPC_ERWCA : 226- 254: knpdl FyraGLqdNDLAVsLNgmdLRdadQAqqA maqla GSPC_ERWCH : 213- 241: pksds FyrvGLqdNDMAVaLNgldLRdeeQAkkA merma GSPC_KLEPN : 227- 255: kdpal FrqsGLreNDLAIaLNgldLRdkeQArqV laqlp GSPC_VIBCH : 250- 276: kdpvl FesiGLqdGDMAVaLNg--LDltdPNvmN tlfqs GSQC_ERWCH : 213- 241: pksds FyrvGLqdNDMAVaLNgldLRdaeQAkkA merma G 7: 42.0715 8( 8) L-x(2)-[GN]-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] Occurences: 8(8) GSPC_AERHY : 238- 261: fnqlg LvaNDMAVsINgldLRdnaQAmqA mqqva GSPC_AERSA : 238- 261: fnqlg LvaNDMAVsINgldLRdnaQAmqA mqqva GSPC_ECOLI : 206- 227: fttsl LqpGDIALrINn--LSlthPDevS qalsl GSPC_ERWCA : 231- 254: fyrag LqdNDLAVsLNgmdLRdadQAqqA maqla GSPC_ERWCH : 218- 241: fyrvg LqdNDMAVaLNgldLRdeeQAkkA merma GSPC_KLEPN : 232- 255: frqsg LreNDLAIaLNgldLRdkeQArqV laqlp GSPC_VIBCH : 255- 276: fesig LqdGDMAVaLNg--LDltdPNvmN tlfqs GSQC_ERWCH : 218- 241: fyrvg LqdNDMAVaLNgldLRdaeQAkkA merma H 8: 38.2984 9( 8) L-x(3,4)-D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] Occurences: 9(8) GSPC_AERHY : 238- 261: fnqlg Lvan-DMAVsINgldLRdnaQAmqA mqqva GSPC_AERSA : 238- 261: fnqlg Lvan-DMAVsINgldLRdnaQAmqA mqqva GSPC_ECOLI : 205- 227: aftts LlqpgDIALrINn--LSlthPDevS qalsl GSPC_ECOLI : 206- 227: fttsl Lqpg-DIALrINn--LSlthPDevS qalsl GSPC_ERWCA : 231- 254: fyrag Lqdn-DLAVsLNgmdLRdadQAqqA maqla GSPC_ERWCH : 218- 241: fyrvg Lqdn-DMAVaLNgldLRdeeQAkkA merma GSPC_KLEPN : 232- 255: frqsg Lren-DLAIaLNgldLRdkeQArqV laqlp GSPC_VIBCH : 255- 276: fesig Lqdg-DMAVaLNg--LDltdPNvmN tlfqs GSQC_ERWCH : 218- 241: fyrvg Lqdn-DMAVaLNgldLRdaeQAkkA merma I 9: 34.6283 8( 8) D-[ILM]-A-[ILV]-x-[IL]-N-x(1,3)-L-[DRS]-x(3)-[NPQ]-[ADN]-x(2)-[ANSV] Occurences: 8(8) GSPC_AERHY : 242- 261: glvan DMAVsINgldLRdnaQAmqA mqqva GSPC_AERSA : 242- 261: glvan DMAVsINgldLRdnaQAmqA mqqva GSPC_ECOLI : 210- 227: llqpg DIALrINn--LSlthPDevS qalsl GSPC_ERWCA : 235- 254: glqdn DLAVsLNgmdLRdadQAqqA maqla GSPC_ERWCH : 222- 241: glqdn DMAVaLNgldLRdeeQAkkA merma GSPC_KLEPN : 236- 255: glren DLAIaLNgldLRdkeQArqV laqlp GSPC_VIBCH : 259- 276: glqdg DMAVaLNg--LDltdPNvmN tlfqs GSQC_ERWCH : 222- 241: glqdn DMAVaLNgldLRdaeQAkkA merma J 10: 32.1723 8( 8) T-[PV]-x-R-[DQ]-G-x(0,1)-Q-x(2)-[DGV]-[ILV]-x-[ILMV]-[AEGNQ] Occurences: 8(8) GSPC_AERHY : 274- 287: temtv TVeRQG-QlyDVyVG lse GSPC_AERSA : 274- 287: temtv TVeRQG-QlyDVyVG lse GSPC_ECOLI : 179- 193: dyiia TPiRDGeQiyGLrLN prkgl GSPC_ERWCA : 267- 280: skfnl TVeRDG-QqqDIyLA ldgdh GSPC_ERWCH : 254- 267: hnftl TVeRDG-QrqDIyME fggde GSPC_KLEPN : 268- 281: teitl TVeRDG-QknDIyLA lrde GSPC_VIBCH : 291- 304: temsl TVeRDG-QqhDVyIQ f GSQC_ERWCH : 254- 267: hnftl TVeRDG-QrqDIyME fggde K 11: 30.8255 8( 8) N-G-[ILM]-[DV]-L-x(1,3)-D-x-[ADENT]-x(4)-[AILV]-x-[AEQ]-x(3)-[DEGQ] Occurences: 8(8) GSPC_AERHY : 248- 267: mavsi NGLDLr--DnAqamqAmQqvaG atemt GSPC_AERSA : 248- 267: mavsi NGLDLr--DnAqamqAmQqvaG atemt GSPC_ECOLI : 94- 115: lsial NGIVLtsnDeTsfvlInEgseQ krysl GSPC_ERWCA : 241- 260: lavsl NGMDLr--DaDqaqqAmAqlaG mskfn GSPC_ERWCH : 228- 247: maval NGLDLr--DeEqakkAmErmaD vhnft GSPC_KLEPN : 242- 261: laial NGLDLr--DkEqarqVlAqlpE lteit GSPC_VIBCH : 265- 284: maval NGLDLt--DpNvmntLfQsmnE mtems GSQC_ERWCH : 228- 247: maval NGLDLr--DaEqakkAmErmaD vhnft L 12: 27.3773 12( 8) A-x(0,2)-L-N-G-x(1,2)-L-x-[DS]-x-[DEN]-x(4)-[AILV] Occurences: 12(8) GSPC_AERHY : 110- 125: ktqln Aq-LNGv-LaSsDpaksI aiiah GSPC_AERSA : 110- 125: ktqln Aq-LNGv-LaSsDpaksI aiiah GSPC_ECOLI : 92- 107: pklsi A--LNGivLtSnDetsfV lineg GSPC_ERWCA : 237- 254: qdndl AvsLNGmdLrDaDqaqqA maqla GSPC_ERWCH : 224- 241: qdndm AvaLNGldLrDeEqakkA merma GSPC_ERWCH : 226- 241: ndmav A--LNGldLrDeEqakkA merma GSPC_KLEPN : 238- 255: rendl AiaLNGldLrDkEqarqV laqlp GSPC_KLEPN : 240- 255: ndlai A--LNGldLrDkEqarqV laqlp GSPC_VIBCH : 261- 278: qdgdm AvaLNGldLtDpNvmntL fqsmn GSPC_VIBCH : 263- 278: gdmav A--LNGldLtDpNvmntL fqsmn GSQC_ERWCH : 224- 241: qdndm AvaLNGldLrDaEqakkA merma GSQC_ERWCH : 226- 241: ndmav A--LNGldLrDaEqakkA merma M 13: 26.1680 8( 8) L-N-G-x(1,2)-L-x(1,3)-D-x-[ADENT]-x(4)-[AILV]-x-[AEQ] Occurences: 8(8) GSPC_AERHY : 112- 129: qlnaq LNGv-LassDpAksiaIiA hngvq GSPC_AERSA : 112- 129: qlnaq LNGv-LassDpAksiaIiA hsgvq GSPC_ECOLI : 93- 111: klsia LNGivLtsnDeTsfvlInE gseqk GSPC_ERWCA : 240- 256: dlavs LNGmdLr--DaDqaqqAmA qlagm GSPC_ERWCH : 227- 243: dmava LNGldLr--DeEqakkAmE rmadv GSPC_KLEPN : 241- 257: dlaia LNGldLr--DkEqarqVlA qlpel GSPC_VIBCH : 264- 280: dmava LNGldLt--DpNvmntLfQ smnem GSQC_ERWCH : 227- 243: dmava LNGldLr--DaEqakkAmE rmadv N 14: 24.2561 8( 8) G-x-[QR]-[LV]-[NS]-P-x(0,2)-G-x(3,5)-F Occurences: 8(8) GSPC_AERHY : 221- 233: dgrmv GyRLNP--GsnpelF nqlgl GSPC_AERSA : 221- 233: dgrmv GyRLNP--GsnpelF nqlgl GSPC_ECOLI : 189- 201: geqiy GlRLNPrkGlna--F ttsll GSPC_ERWCA : 214- 226: eevlk GyQLNP--GknpdlF yragl GSPC_ERWCH : 201- 213: dnklh GyRLNP--GpksdsF yrvgl GSPC_KLEPN : 215- 227: ndkls GyRLNP--GkdpalF rqsgl GSPC_VIBCH : 238- 250: ddkvl GyRVSP--GkdpvlF esigl GSQC_ERWCH : 201- 213: dnklq GyRLNP--GpksdsF yrvgl O 15: 24.0206 10( 8) T-x(0,1)-V-x(0,2)-E-x(2)-G-x(3)-[DK]-[IV]-x-[ILMV] Occurences: 10(8) GSPC_AERHY : 272- 286: gatem T-VtvErqGqlyDVyV glse GSPC_AERHY : 274- 286: temtv T-V--ErqGqlyDVyV glse GSPC_AERSA : 272- 286: gatem T-VtvErqGqlyDVyV glse GSPC_AERSA : 274- 286: temtv T-V--ErqGqlyDVyV glse GSPC_ECOLI : 138- 153: rkink TsVvfEthGhyeKVtL hpglp GSPC_ERWCA : 267- 279: skfnl T-V--ErdGqqqDIyL aldgd GSPC_ERWCH : 254- 266: hnftl T-V--ErdGqrqDIyM efggd GSPC_KLEPN : 268- 280: teitl T-V--ErdGqknDIyL alrde GSPC_VIBCH : 291- 303: temsl T-V--ErdGqqhDVyI qf GSQC_ERWCH : 254- 266: hnftl T-V--ErdGqrqDIyM efggd P 16: 20.7991 8( 8) T-x(0,1)-V-x(2,3)-G-Q-x(2)-[DN]-x(3)-[AEGNQ] Occurences: 8(8) GSPC_AERHY : 274- 287: temtv T-VerqGQlyDvyvG lse GSPC_AERSA : 274- 287: temtv T-VerqGQlyDvyvG lse GSPC_ECOLI : 41- 54: nyfht TiVkn-GQiiNqptN afqsd GSPC_ERWCA : 267- 280: skfnl T-VerdGQqqDiylA ldgdh GSPC_ERWCH : 254- 267: hnftl T-VerdGQrqDiymE fggde GSPC_KLEPN : 268- 281: teitl T-VerdGQknDiylA lrde GSPC_VIBCH : 291- 304: temsl T-VerdGQqhDvyiQ f GSQC_ERWCH : 254- 267: hnftl T-VerdGQrqDiymE fggde Q 17: 18.8505 10( 8) L-x-[GL]-L-x(0,1)-L-x(4,5)-A Occurences: 10(8) GSPC_AERHY : 32- 42: qplfw LlLLlLahqc-A gltwr GSPC_AERHY : 32- 42: qplfw LlLL-LlahqcA gltwr GSPC_AERHY : 33- 42: plfwl LlLL-Lahqc-A gltwr GSPC_AERSA : 32- 42: qplfw LlLLlLahqc-A gltwr GSPC_AERSA : 32- 42: qplfw LlLL-LlahqcA gltwr GSPC_AERSA : 33- 42: plfwl LlLL-Lahqc-A gltwr GSPC_ECOLI : 230- 239: evsqa LsLL-Ltqqs-A qftir GSPC_ERWCA : 32- 42: rfvlg LiLL-LicqqlA vltwr GSPC_ERWCH : 227- 238: dmava LnGLdLrdeeqA kkame GSPC_KLEPN : 241- 252: dlaia LnGLdLrdkeqA rqvla GSPC_VIBCH : 31- 40: piseg LtLL-Llvas-A wtlak GSQC_ERWCH : 227- 238: dmava LnGLdLrdaeqA kkame R 18: 18.3544 14( 8) L-x(1,2)-L-x(0,1)-L-x(3)-[AEQ]-x-A Occurences: 14(8) GSPC_AERHY : 32- 42: qplfw LllL-LlahQcA gltwr GSPC_AERHY : 32- 42: qplfw Ll-LlLlahQcA gltwr GSPC_AERHY : 33- 42: plfwl Ll-L-LlahQcA gltwr GSPC_AERSA : 32- 42: qplfw LllL-LlahQcA gltwr GSPC_AERSA : 32- 42: qplfw Ll-LlLlahQcA gltwr GSPC_AERSA : 33- 42: plfwl Ll-L-LlahQcA gltwr GSPC_ECOLI : 230- 239: evsqa Ls-L-LltqQsA qftir GSPC_ERWCA : 32- 42: rfvlg LilL-LicqQlA vltwr GSPC_ERWCA : 32- 42: rfvlg Li-LlLicqQlA vltwr GSPC_ERWCH : 21- 31: rilfy LlmL-LfcqQlA mifwr GSPC_ERWCH : 22- 31: ilfyl Lm-L-LfcqQlA mifwr GSPC_ERWCH : 227- 238: dmava LngLdLrdeEqA kkame GSPC_KLEPN : 241- 252: dlaia LngLdLrdkEqA rqvla GSPC_VIBCH : 31- 40: piseg Lt-L-LllvAsA wtlak GSQC_ERWCH : 21- 31: rilfy LlmL-LfcqQlA mifwr GSQC_ERWCH : 22- 31: ilfyl Lm-L-LfcqQlA mifwr GSQC_ERWCH : 227- 238: dmava LngLdLrdaEqA kkame S 19: 17.4209 8( 8) A-x(3,4)-N-x-L-x(1,3)-L-x(3)-[ADEN] Occurences: 8(8) GSPC_AERHY : 244- 256: vandm Avsi-NgLd--LrdnA qamqa GSPC_AERSA : 244- 256: vandm Avsi-NgLd--LrdnA qamqa GSPC_ECOLI : 212- 224: qpgdi Alri-NnLs--LthpD evsqa GSPC_ERWCA : 229- 244: dlfyr AglqdNdLavsLngmD lrdad GSPC_ERWCH : 224- 236: qdndm Aval-NgLd--LrdeE qakka GSPC_KLEPN : 238- 250: rendl Aial-NgLd--LrdkE qarqv GSPC_VIBCH : 261- 273: qdgdm Aval-NgLd--LtdpN vmntl GSQC_ERWCH : 224- 236: qdndm Aval-NgLd--LrdaE qakka T 20: 15.6802 8( 8) N-G-x(2)-L-x(1,3)-D Occurences: 8(8) GSPC_AERHY : 248- 254: mavsi NGldLr--D naqam GSPC_AERSA : 248- 254: mavsi NGldLr--D naqam GSPC_ECOLI : 94- 102: lsial NGivLtsnD etsfv GSPC_ERWCA : 241- 247: lavsl NGmdLr--D adqaq GSPC_ERWCA : 241- 249: lavsl NGmdLrdaD qaqqa GSPC_ERWCH : 228- 234: maval NGldLr--D eeqak GSPC_KLEPN : 242- 248: laial NGldLr--D keqar GSPC_VIBCH : 265- 271: maval NGldLt--D pnvmn GSQC_ERWCH : 228- 234: maval NGldLr--D aeqak Number of patterns evaluated by Pratt:4107 Total running time: 3 seconds