------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file SYNAPTOP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SYNAPTOP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SYNP_RAT 265 SYPH_BOVIN 307 SYPH_HUMAN 313 SYPH_RAT 307 Pratt run started at Thu Feb 6 21:20:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 153.2919 4( 4) I-x(0,1)-F-x(0,1)-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V-K-x-A-T-D-P 2: 153.2919 4( 4) Y-x(1,2)-F-x(0,1)-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V-K-x-A-T-D-P 3: 153.2919 4( 4) A-T-x(0,2)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V-K-x-A 4: 153.2919 4( 4) V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T 5: 153.2919 4( 4) L-V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F 6: 150.1218 4( 4) G-x(2)-S-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T 7: 149.1218 5( 4) S-x(1,2)-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F 8: 149.1218 4( 4) G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T 9: 149.1218 4( 4) G-x(1,2)-S-x(0,1)-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T 10: 145.9518 4( 4) F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L 11: 145.4518 5( 4) F-x(1,2)-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V-K-x-A-T-D-P 12: 145.4518 4( 4) S-x(2)-A-x(2,3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V 13: 145.4518 4( 4) A-x(0,1)-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W 14: 145.4518 5( 4) S-x(2,3)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F 15: 143.9518 4( 4) S-x(2)-A-x(0,2)-T-x(0,2)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D 16: 141.7817 4( 4) N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G-L-S-D-V-K-x-A-T-D-P 17: 141.7817 4( 4) F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K-G 18: 141.7817 4( 4) A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S-A-W-A-K 19: 141.7817 4( 4) V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F-x-W-L-V-x-S-S 20: 141.7817 4( 4) E-F-F-V-T-V-A-V-F-A-F-L-Y-S-x(2)-A-x(3)-Y-I-F-x-Q-N-K-Y-R-E-N-N-x-G-P-x(2)-D-F-x(2)-T-x-V-F-x-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 189.3265 4( 4) A-T-x(0,2)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A B 2: 189.2698 4( 4) I-x(0,1)-F-x(0,1)-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK] C 3: 188.4228 4( 4) F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L D 4: 187.9228 4( 4) A-x(0,1)-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W E 5: 187.4486 4( 4) N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK]-[EN]-[IV]-[IL] F 6: 187.4332 4( 4) F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G G 7: 187.4332 4( 4) A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K H 8: 187.4332 4( 4) V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S I 9: 186.0585 4( 4) Y-x(1,2)-F-x(0,1)-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P J 10: 185.8310 4( 4) V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T K 11: 184.8468 5( 4) S-x(1,2)-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F L 12: 183.2456 4( 4) S-[LM]-[AG]-A-x(0,2)-T-x(0,2)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D M 13: 182.6609 4( 4) G-x(2)-S-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T N 14: 182.6452 4( 4) L-V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL] O 15: 181.6609 4( 4) G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T P 16: 181.6609 4( 4) G-x(1,2)-S-x(0,1)-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T Q 17: 181.4297 5( 4) F-x(1,2)-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK] R 18: 181.1767 5( 4) S-x(2,3)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F S 19: 180.6858 4( 4) E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F T 20: 178.0085 4( 4) S-x(2)-A-x(2,3)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 189.3265 4( 4) A-T-x(0,2)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A Occurences: 4(4) SYNP_RAT : 96- 145: lysla ATvvYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVA tdpke SYPH_BOVIN : 117- 164: smgal AT--YIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMA tdpen SYPH_HUMAN : 123- 170: smgal AT--YIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMA tdpen SYPH_RAT : 118- 165: smgal AT--YIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMA tdpen B 2: 189.2698 4( 4) I-x(0,1)-F-x(0,1)-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK] Occurences: 4(4) SYNP_RAT : 101- 149: atvvy IfF-QNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPK evlll SYNP_RAT : 101- 149: atvvy I-FfQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPK evlll SYPH_BOVIN : 120- 168: alaty I-FlQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niikg SYPH_HUMAN : 126- 174: alaty I-FlQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niike SYPH_RAT : 121- 169: alaty I-FlQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niike C 3: 188.4228 4( 4) F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L Occurences: 4(4) SYNP_RAT : 81- 129: sssae FFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWL vgssa SYPH_BOVIN : 100- 148: sssae FFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWL vsssa SYPH_HUMAN : 106- 154: sssae FFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWL vsssa SYPH_RAT : 101- 149: sssae FFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAFMWL vsssa D 4: 187.9228 4( 4) A-x(0,1)-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W Occurences: 4(4) SYNP_RAT : 79- 128: dssss AeFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSFLW lvgss SYPH_BOVIN : 98- 147: nysss AeFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMW lvsss SYPH_HUMAN : 104- 153: dysss AeFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMW lvsss SYPH_RAT : 99- 148: dysss AeFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAFMW lvsss E 5: 187.4486 4( 4) N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK]-[EN]-[IV]-[IL] Occurences: 4(4) SYNP_RAT : 105- 152: yiffq NKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPKEVL llmsa SYPH_BOVIN : 124- 171: yiflq NKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENII kgmhv SYPH_HUMAN : 130- 177: yiflq NKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENII kempv SYPH_RAT : 125- 172: yiflq NKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENII kempm F 6: 187.4332 4( 4) F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G Occurences: 4(4) SYNP_RAT : 90- 138: vavfa FLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKG lsdvk SYPH_BOVIN : 109- 157: vavfa FLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKG lsdvk SYPH_HUMAN : 115- 163: vavfa FLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKG lsdvk SYPH_RAT : 110- 158: vavfa FLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKG lsdvk G 7: 187.4332 4( 4) A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K Occurences: 4(4) SYNP_RAT : 89- 137: tvavf AFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAK glsdv SYPH_BOVIN : 108- 156: tvavf AFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAK glsdv SYPH_HUMAN : 114- 162: tvavf AFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAK glsdv SYPH_RAT : 109- 157: tvavf AFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAK glsdv H 8: 187.4332 4( 4) V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S Occurences: 4(4) SYNP_RAT : 85- 133: effvt VAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSS awakg SYPH_BOVIN : 104- 152: effvt VAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSS awakg SYPH_HUMAN : 110- 158: effvt VAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSS awakg SYPH_RAT : 105- 153: effvt VAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSS awakg I 9: 186.0585 4( 4) Y-x(1,2)-F-x(0,1)-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P Occurences: 4(4) SYNP_RAT : 100- 148: aatvv YifF-QNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDP kevll SYNP_RAT : 100- 148: aatvv Yi-FfQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDP kevll SYPH_BOVIN : 119- 167: galat Yi-FlQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDP eniik SYPH_HUMAN : 125- 173: galat Yi-FlQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDP eniik SYPH_RAT : 120- 168: galat Yi-FlQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDP eniik J 10: 185.8310 4( 4) V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T Occurences: 4(4) SYNP_RAT : 72- 121: qnval VGdsSSS-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYNP_RAT : 72- 121: qnval VGd-SSSsAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYPH_BOVIN : 91- 140: kkifl VGnySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_HUMAN : 97- 146: tkvfl VGdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_RAT : 92- 141: tkifl VGdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLAT avfaf K 11: 184.8468 5( 4) S-x(1,2)-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F Occurences: 5(4) SYNP_RAT : 75- 124: alvgd SssS-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVF sflwl SYNP_RAT : 75- 124: alvgd Ss-SsAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVF sflwl SYNP_RAT : 76- 124: lvgds Ss-S-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVF sflwl SYPH_BOVIN : 95- 143: lvgny Ss-S-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVF afmwl SYPH_HUMAN : 101- 149: lvgdy Ss-S-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVF afmwl SYPH_RAT : 96- 144: lvgdy Ss-S-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVF afmwl L 12: 183.2456 4( 4) S-[LM]-[AG]-A-x(0,2)-T-x(0,2)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D Occurences: 4(4) SYNP_RAT : 93- 141: fafly SLAA--TvvYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSD vkvat SYPH_BOVIN : 112- 160: fafly SMGAlaT--YIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSD vkmat SYPH_HUMAN : 118- 166: fafly SMGAlaT--YIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSD vkmat SYPH_RAT : 113- 161: fafly SMGAlaT--YIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSD vkmat M 13: 182.6609 4( 4) G-x(2)-S-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T Occurences: 4(4) SYNP_RAT : 73- 121: nvalv GdsSSSAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYPH_BOVIN : 92- 140: kiflv GnySSSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_HUMAN : 98- 146: kvflv GdySSSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_RAT : 93- 141: kiflv GdySSSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLAT avfaf N 14: 182.6452 4( 4) L-V-G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL] Occurences: 4(4) SYNP_RAT : 71- 119: rqnva LVGdsSSS-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFI vtvvf SYNP_RAT : 71- 119: rqnva LVGd-SSSsAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFI vtvvf SYPH_BOVIN : 90- 138: pkkif LVGnySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFL atavf SYPH_HUMAN : 96- 144: ttkvf LVGdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFL atavf SYPH_RAT : 91- 139: ttkif LVGdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFL atavf O 15: 181.6609 4( 4) G-x(1,2)-S-S-S-x(0,1)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T Occurences: 4(4) SYNP_RAT : 73- 121: nvalv GdsSSS-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYNP_RAT : 73- 121: nvalv Gd-SSSsAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYPH_BOVIN : 92- 140: kiflv GnySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_HUMAN : 98- 146: kvflv GdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_RAT : 93- 141: kiflv GdySSS-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLAT avfaf P 16: 181.6609 4( 4) G-x(1,2)-S-x(0,1)-S-S-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T Occurences: 4(4) SYNP_RAT : 73- 121: nvalv GdsS-SSAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYNP_RAT : 73- 121: nvalv Gd-SsSSAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVT vvfsf SYPH_BOVIN : 92- 140: kiflv GnyS-SSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_HUMAN : 98- 146: kvflv GdyS-SSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLAT avfaf SYPH_RAT : 93- 141: kiflv GdyS-SSAEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLAT avfaf Q 17: 181.4297 5( 4) F-x(1,2)-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V-K-[MV]-A-T-D-P-[EK] Occurences: 5(4) SYNP_RAT : 102- 149: tvvyi FfqNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPK evlll SYNP_RAT : 103- 149: vvyif Fq-NKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDVKVATDPK evlll SYPH_BOVIN : 121- 168: latyi FlqNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niikg SYPH_HUMAN : 127- 174: latyi FlqNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niike SYPH_RAT : 122- 169: latyi FlqNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPE niike R 18: 181.1767 5( 4) S-x(2,3)-A-E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F Occurences: 5(4) SYNP_RAT : 75- 124: alvgd SsssAEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVF sflwl SYNP_RAT : 76- 124: lvgds Sss-AEFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVF sflwl SYPH_BOVIN : 95- 143: lvgny Sss-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVF afmwl SYPH_HUMAN : 101- 149: lvgdy Sss-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVF afmwl SYPH_RAT : 96- 144: lvgdy Sss-AEFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVF afmwl S 19: 180.6858 4( 4) E-F-F-V-T-V-A-V-F-A-F-L-Y-S-[LM]-[AG]-A-x-[AV]-[TV]-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F Occurences: 4(4) SYNP_RAT : 80- 126: ssssa EFFVTVAVFAFLYSLAAtVVYIFFQNKYRENNRGPLIDFIVTVVFSF lwlvg SYPH_BOVIN : 99- 145: ysssa EFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAF mwlvs SYPH_HUMAN : 105- 151: ysssa EFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMLDFLATAVFAF mwlvs SYPH_RAT : 100- 146: ysssa EFFVTVAVFAFLYSMGAlATYIFLQNKYRENNKGPMMDFLATAVFAF mwlvs T 20: 178.0085 4( 4) S-x(2)-A-x(2,3)-Y-I-F-[FL]-Q-N-K-Y-R-E-N-N-[KR]-G-P-[LM]-[ILM]-D-F-[IL]-[AV]-T-[AV]-V-F-[AS]-F-[LM]-W-L-V-[GS]-S-S-A-W-A-K-G-L-S-D-V Occurences: 4(4) SYNP_RAT : 93- 142: fafly SlaAtvvYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLSDV kvatd SYPH_BOVIN : 112- 161: fafly SmgAlatYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDV kmatd SYPH_HUMAN : 118- 167: fafly SmgAlatYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDV kmatd SYPH_RAT : 113- 162: fafly SmgAlatYIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLSDV kmatd Number of patterns evaluated by Pratt:65980 Total running time: 8 seconds