------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file SYNAPTOBREVIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SYNAPTOBREVIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SNC1_YEAST 117 SNC2_YEAST 115 SYB1_HUMAN 118 SYB2_HUMAN 116 SYB2_XENLA 82 SYBR_ARATH 221 SYB_APLCA 180 SYB_DROME 152 SYB_LOLPE 125 SYB_TORCA 120 Pratt run started at Thu Feb 6 21:20:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.3503 10( 10) L-x(2,4)-D-x(0,1)-K-x(3)-L-x(3)-A 2: 16.6802 10( 10) N-x(2)-K-V-x(2)-R 3: 16.1802 10( 10) D-x(0,1)-K-x(3)-L-x(3)-A 4: 15.6802 11( 10) R-x(0,1)-K-x(1,2)-W-x(4)-K 5: 15.1802 10( 10) R-K-x(1,2)-W-x(3,5)-M 6: 12.5102 10( 10) K-x(3)-L-x(3)-A 7: 12.5102 10( 10) K-V-x(2)-R 8: 12.0102 14( 10) I-I-x(3,4)-I 9: 12.0102 11( 10) K-x(0,1)-L-K 10: 12.0102 11( 10) L-x(3)-A-x(0,1)-Q 11: 12.0102 10( 10) R-x(5)-V-x(0,1)-E 12: 12.0102 10( 10) I-x(3,4)-N-x(2)-K 13: 12.0102 11( 10) V-x(5)-I-x(1,2)-V 14: 11.5102 18( 10) I-I-x(1,3)-I 15: 11.5102 18( 10) V-x(1,3)-I-I 16: 11.5102 17( 10) K-x(1,3)-W-x(4)-K 17: 11.5102 10( 10) K-x(0,2)-W-x(4)-K 18: 11.5102 10( 10) K-x(1,2)-W-x(3,4)-K 19: 11.5102 14( 10) A-x(3,4)-R-x(0,1)-K 20: 11.5102 10( 10) A-x(3)-E-x(1,3)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 119.6144 10( 10) N-[IV]-[DEN]-K-V-[AL]-[DE]-R-[DG]-[EQST]-[KR]-[IL]-[EST]-x-[IL]-x-[DE]-[KR]-[AT]-[DE]-[ANQ]-L-x(2)-[GQS]-A-[QS]-[DGQ]-x-[EKR]-x-[GQS]-[AG]-[AGNT]-x-[LMV]-[KR]-[KR]-x(2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM] B 2: 114.6473 10( 10) K-V-[AL]-[DE]-R-[DG]-[EQST]-[KR]-[IL]-[EST]-x-[IL]-x-[DE]-[KR]-[AT]-[DE]-[ANQ]-L-x(2)-[GQS]-A-[QS]-[DGQ]-x-[EKR]-x-[GQS]-[AG]-[AGNT]-x-[LMV]-[KR]-[KR]-x(2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV] C 3: 58.6765 11( 10) R-x(0,1)-K-x(1,2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] D 4: 54.5064 17( 10) K-x(1,3)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] E 5: 54.5064 10( 10) K-x(0,2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] F 6: 50.7409 10( 10) L-x(2,4)-D-x(0,1)-K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] G 7: 48.5787 10( 10) K-x(1,2)-W-x(3,4)-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] H 8: 47.5709 10( 10) D-x(0,1)-K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] I 9: 47.5084 10( 10) R-K-x(1,2)-W-x(3,5)-M-x-[IM]-x-[GL]-x-[ILV]-x-[AGIV]-[IV]-[IL]-[ILV]-x-[ILV]-[IV]-[ILV]-[IV] J 10: 43.9008 10( 10) K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] K 11: 32.1019 10( 10) L-x(2)-[GQS]-A-x(0,1)-Q-x(4)-[AGQ]-[AG]-x(3)-R-[KR]-x(2)-W L 12: 26.5937 10( 10) R-x(5)-V-x(0,1)-E-x(2)-[DENQST]-x(3)-[ENRS]-x-[DEGT]-[DES]-x-[AI]-[ADG] M 13: 20.0781 10( 10) V-x(2)-[GIV]-x(2)-I-x(1,2)-V-x-[FV]-[DEST] N 14: 18.6713 11( 10) I-I-x(1,3)-I-[AILV]-[AIV]-x-[FILV] O 15: 17.3411 10( 10) I-I-x(3,4)-I-[AIV]-[AIV] P 16: 14.9412 14( 10) A-x(3,4)-R-x(0,1)-K-x(2)-[FW] Q 17: 14.7038 10( 10) K-x(0,1)-L-K-x-[HKR] R 18: 14.2546 10( 10) I-x(3,4)-N-x-[DEGN]-K S 19: 11.5102 11( 10) R-x(0,1)-K-x(1,2)-W T 20: 11.5102 18( 10) V-x(1,3)-I-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 119.6144 10( 10) N-[IV]-[DEN]-K-V-[AL]-[DE]-R-[DG]-[EQST]-[KR]-[IL]-[EST]-x-[IL]-x-[DE]-[KR]-[AT]-[DE]-[ANQ]-L-x(2)-[GQS]-A-[QS]-[DGQ]-x-[EKR]-x-[GQS]-[AG]-[AGNT]-x-[LMV]-[KR]-[KR]-x(2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM] Occurences: 10(10) SNC1_YEAST : 46- 94: gimrd NINKVAERGERLTsIeDKADNLavSAQGfKrGANrVRKamWYkDlKMkM clalv SNC2_YEAST : 45- 93: gimrd NINKVAERGERLTsIeDKADNLaiSAQGfKrGANrVRKqmWWkDlKMrM clflv SYB1_HUMAN : 51- 99: diirv NVDKVLERDQKLSeLdDRADALqaGASQfEsSAAkLKRkyWWkNcKMmI mlgai SYB2_HUMAN : 49- 97: dimrv NVDKVLERDQKLSeLdDRADALqaGASQfEtSAAkLKRkyWWkNlKMmI ilgvi SYB2_XENLA : 15- 63: dimrv NVDKVLERDTKLSeLdDRADALqaGASQfEtSAAkLKRkyWWkNmKMmI imgvi SYBR_ARATH : 148- 196: gvmme NIEKVLDRGEKIElLvDKTENLrsQAQDfRtQGTqMRRkmWFqNmKIkL ivlai SYB_APLCA : 39- 87: dimrv NVEKVLDRDQKISqLdDRAEALqaGASQfEaSAGkLKRkyWWkNcKMmL ilgai SYB_DROME : 65- 113: gimrv NVEKVLERDQKLSeLgERADQLeqGASQsEqQAGkLKRkqWWaNmKMmI ilgvi SYB_LOLPE : 58- 106: dimrv NVDKVLERDSKISeLdDRADALqaGASQfEaSAGkLKRkfWWkNcKMmI ilggi SYB_TORCA : 53- 101: diirv NVDKVLERDQKLSeLdDRADALqaGASQfEsSAAkLKRkyWWkNcKMmI mlggi B 2: 114.6473 10( 10) K-V-[AL]-[DE]-R-[DG]-[EQST]-[KR]-[IL]-[EST]-x-[IL]-x-[DE]-[KR]-[AT]-[DE]-[ANQ]-L-x(2)-[GQS]-A-[QS]-[DGQ]-x-[EKR]-x-[GQS]-[AG]-[AGNT]-x-[LMV]-[KR]-[KR]-x(2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV] Occurences: 10(10) SNC1_YEAST : 49- 98: rdnin KVAERGERLTsIeDKADNLavSAQGfKrGANrVRKamWYkDlKMkMcLaL viiil SNC2_YEAST : 48- 97: rdnin KVAERGERLTsIeDKADNLaiSAQGfKrGANrVRKqmWWkDlKMrMcLfL vviil SYB1_HUMAN : 54- 103: rvnvd KVLERDQKLSeLdDRADALqaGASQfEsSAAkLKRkyWWkNcKMmImLgA icaii SYB2_HUMAN : 52- 101: rvnvd KVLERDQKLSeLdDRADALqaGASQfEtSAAkLKRkyWWkNlKMmIiLgV icaii SYB2_XENLA : 18- 67: rvnvd KVLERDTKLSeLdDRADALqaGASQfEtSAAkLKRkyWWkNmKMmIiMgV icaii SYBR_ARATH : 151- 200: menie KVLDRGEKIElLvDKTENLrsQAQDfRtQGTqMRRkmWFqNmKIkLiVlA iiial SYB_APLCA : 42- 91: rvnve KVLDRDQKISqLdDRAEALqaGASQfEaSAGkLKRkyWWkNcKMmLiLgA iigvi SYB_DROME : 68- 117: rvnve KVLERDQKLSeLgERADQLeqGASQsEqQAGkLKRkqWWaNmKMmIiLgV iavvl SYB_LOLPE : 61- 110: rvnvd KVLERDSKISeLdDRADALqaGASQfEaSAGkLKRkfWWkNcKMmIiLgG ivavi SYB_TORCA : 56- 105: rvnvd KVLERDQKLSeLdDRADALqaGASQfEsSAAkLKRkyWWkNcKMmImLgG igaii C 3: 58.6765 11( 10) R-x(0,1)-K-x(1,2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] Occurences: 11(10) SNC1_YEAST : 82- 109: ganrv R-KamWYkDlKMkMcLaLViIILLvVIIV piavh SNC2_YEAST : 81- 108: ganrv R-KqmWWkDlKMrMcLfLVvIILLvVIIV pivvh SYB1_HUMAN : 88- 114: aaklk R-Ky-WWkNcKMmImLgAIcAIIVvVIVI yfft SYB2_HUMAN : 86- 112: aaklk R-Ky-WWkNlKMmIiLgVIcAIILiIIIV yfss SYB2_XENLA : 52- 78: aaklk R-Ky-WWkNmKMmIiMgVIcAIILiIIIV yfst SYBR_ARATH : 184- 211: qgtqm RrKm-WFqNmKIkLiVlAIiIALIlIIIL sicgg SYBR_ARATH : 185- 211: gtqmr R-Km-WFqNmKIkLiVlAIiIALIlIIIL sicgg SYB_APLCA : 76- 102: agklk R-Ky-WWkNcKMmLiLgAIiGVIViIIIV wvvts SYB_DROME : 102- 128: agklk R-Kq-WWaNmKMmIiLgVIaVVLLiIVLV svwps SYB_LOLPE : 95- 121: agklk R-Kf-WWkNcKMmIiLgGIvAVIVtVIIV waat SYB_TORCA : 90- 116: aaklk R-Ky-WWkNcKMmImLgGIgAIIViVIII yfft D 4: 54.5064 17( 10) K-x(1,3)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] Occurences: 17(10) SNC1_YEAST : 83- 109: anrvr Kam-WYkDlKMkMcLaLViIILLvVIIV piavh SNC2_YEAST : 82- 108: anrvr Kqm-WWkDlKMrMcLfLVvIILLvVIIV pivvh SYB1_HUMAN : 87- 114: saakl KrkyWWkNcKMmImLgAIcAIIVvVIVI yfft SYB1_HUMAN : 89- 114: aklkr Ky--WWkNcKMmImLgAIcAIIVvVIVI yfft SYB2_HUMAN : 85- 112: saakl KrkyWWkNlKMmIiLgVIcAIILiIIIV yfss SYB2_HUMAN : 87- 112: aklkr Ky--WWkNlKMmIiLgVIcAIILiIIIV yfss SYB2_XENLA : 51- 78: saakl KrkyWWkNmKMmIiMgVIcAIILiIIIV yfst SYB2_XENLA : 53- 78: aklkr Ky--WWkNmKMmIiMgVIcAIILiIIIV yfst SYBR_ARATH : 186- 211: tqmrr Km--WFqNmKIkLiVlAIiIALIlIIIL sicgg SYB_APLCA : 75- 102: sagkl KrkyWWkNcKMmLiLgAIiGVIViIIIV wvvts SYB_APLCA : 77- 102: gklkr Ky--WWkNcKMmLiLgAIiGVIViIIIV wvvts SYB_DROME : 101- 128: qagkl KrkqWWaNmKMmIiLgVIaVVLLiIVLV svwps SYB_DROME : 103- 128: gklkr Kq--WWaNmKMmIiLgVIaVVLLiIVLV svwps SYB_LOLPE : 94- 121: sagkl KrkfWWkNcKMmIiLgGIvAVIVtVIIV waat SYB_LOLPE : 96- 121: gklkr Kf--WWkNcKMmIiLgGIvAVIVtVIIV waat SYB_TORCA : 89- 116: saakl KrkyWWkNcKMmImLgGIgAIIViVIII yfft SYB_TORCA : 91- 116: aklkr Ky--WWkNcKMmImLgGIgAIIViVIII yfft E 5: 54.5064 10( 10) K-x(0,2)-W-[FWY]-x-[DN]-x-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] Occurences: 10(10) SNC1_YEAST : 83- 109: anrvr KamWYkDlKMkMcLaLViIILLvVIIV piavh SNC2_YEAST : 82- 108: anrvr KqmWWkDlKMrMcLfLVvIILLvVIIV pivvh SYB1_HUMAN : 89- 114: aklkr Ky-WWkNcKMmImLgAIcAIIVvVIVI yfft SYB2_HUMAN : 87- 112: aklkr Ky-WWkNlKMmIiLgVIcAIILiIIIV yfss SYB2_XENLA : 53- 78: aklkr Ky-WWkNmKMmIiMgVIcAIILiIIIV yfst SYBR_ARATH : 186- 211: tqmrr Km-WFqNmKIkLiVlAIiIALIlIIIL sicgg SYB_APLCA : 77- 102: gklkr Ky-WWkNcKMmLiLgAIiGVIViIIIV wvvts SYB_DROME : 103- 128: gklkr Kq-WWaNmKMmIiLgVIaVVLLiIVLV svwps SYB_LOLPE : 96- 121: gklkr Kf-WWkNcKMmIiLgGIvAVIVtVIIV waat SYB_TORCA : 91- 116: aklkr Ky-WWkNcKMmImLgGIgAIIViVIII yfft F 6: 50.7409 10( 10) L-x(2,4)-D-x(0,1)-K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] Occurences: 10(10) SNC1_YEAST : 57- 82: erger LtsieD-KaDNLavSAQGFkrGANRvR kamwy SNC2_YEAST : 56- 81: erger LtsieD-KaDNLaiSAQGFkrGANRvR kqmww SYB1_HUMAN : 56- 80: nvdkv Ler--DqKlSELddRADALqaGASQfE ssaak SYB2_HUMAN : 54- 78: nvdkv Ler--DqKlSELddRADALqaGASQfE tsaak SYB2_XENLA : 20- 44: nvdkv Ler--DtKlSELddRADALqaGASQfE tsaak SYBR_ARATH : 161- 184: gekie Llv--D-KtENLrsQAQDFrtQGTQmR rkmwf SYB_APLCA : 44- 68: nvekv Ldr--DqKiSQLddRAEALqaGASQfE asagk SYB_DROME : 70- 94: nvekv Ler--DqKlSELgeRADQLeqGASQsE qqagk SYB_LOLPE : 63- 87: nvdkv Ler--DsKiSELddRADALqaGASQfE asagk SYB_TORCA : 58- 82: nvdkv Ler--DqKlSELddRADALqaGASQfE ssaak G 7: 48.5787 10( 10) K-x(1,2)-W-x(3,4)-K-[IM]-x-[ILM]-x-[LMV]-x-[AGLV]-[IV]-x-[AGIV]-[AIV]-[IL]-[ILV]-x-[IV]-[IV]-[ILV]-[ILV] Occurences: 10(10) SNC1_YEAST : 83- 109: anrvr KamWykdlKMkMcLaLViIILLvVIIV piavh SNC2_YEAST : 82- 108: anrvr KqmWwkdlKMrMcLfLVvIILLvVIIV pivvh SYB1_HUMAN : 89- 114: aklkr KywWknc-KMmImLgAIcAIIVvVIVI yfft SYB1_HUMAN : 89- 114: aklkr Ky-WwkncKMmImLgAIcAIIVvVIVI yfft SYB2_HUMAN : 87- 112: aklkr KywWknl-KMmIiLgVIcAIILiIIIV yfss SYB2_HUMAN : 87- 112: aklkr Ky-WwknlKMmIiLgVIcAIILiIIIV yfss SYB2_XENLA : 53- 78: aklkr KywWknm-KMmIiMgVIcAIILiIIIV yfst SYB2_XENLA : 53- 78: aklkr Ky-WwknmKMmIiMgVIcAIILiIIIV yfst SYBR_ARATH : 186- 211: tqmrr Km-WfqnmKIkLiVlAIiIALIlIIIL sicgg SYB_APLCA : 77- 102: gklkr KywWknc-KMmLiLgAIiGVIViIIIV wvvts SYB_APLCA : 77- 102: gklkr Ky-WwkncKMmLiLgAIiGVIViIIIV wvvts SYB_DROME : 103- 128: gklkr KqwWanm-KMmIiLgVIaVVLLiIVLV svwps SYB_DROME : 103- 128: gklkr Kq-WwanmKMmIiLgVIaVVLLiIVLV svwps SYB_LOLPE : 96- 121: gklkr KfwWknc-KMmIiLgGIvAVIVtVIIV waat SYB_LOLPE : 96- 121: gklkr Kf-WwkncKMmIiLgGIvAVIVtVIIV waat SYB_TORCA : 91- 116: aklkr KywWknc-KMmImLgGIgAIIViVIII yfft SYB_TORCA : 91- 116: aklkr Ky-WwkncKMmImLgGIgAIIViVIII yfft H 8: 47.5709 10( 10) D-x(0,1)-K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] Occurences: 10(10) SNC1_YEAST : 62- 82: ltsie D-KaDNLavSAQGFkrGANRvR kamwy SNC2_YEAST : 61- 81: ltsie D-KaDNLaiSAQGFkrGANRvR kqmww SYB1_HUMAN : 59- 80: kvler DqKlSELddRADALqaGASQfE ssaak SYB2_HUMAN : 57- 78: kvler DqKlSELddRADALqaGASQfE tsaak SYB2_XENLA : 23- 44: kvler DtKlSELddRADALqaGASQfE tsaak SYBR_ARATH : 164- 184: iellv D-KtENLrsQAQDFrtQGTQmR rkmwf SYB_APLCA : 47- 68: kvldr DqKiSQLddRAEALqaGASQfE asagk SYB_DROME : 73- 94: kvler DqKlSELgeRADQLeqGASQsE qqagk SYB_LOLPE : 66- 87: kvler DsKiSELddRADALqaGASQfE asagk SYB_TORCA : 61- 82: kvler DqKlSELddRADALqaGASQfE ssaak I 9: 47.5084 10( 10) R-K-x(1,2)-W-x(3,5)-M-x-[IM]-x-[GL]-x-[ILV]-x-[AGIV]-[IV]-[IL]-[ILV]-x-[ILV]-[IV]-[ILV]-[IV] Occurences: 10(10) SNC1_YEAST : 82- 108: ganrv RKamWykdlkMkMcLaLvIIILlVVII vpiav SNC2_YEAST : 81- 107: ganrv RKqmWwkdlkMrMcLfLvVIILlVVII vpivv SYB1_HUMAN : 88- 114: aaklk RKywWknckmMiMlGaIcAIIVvVIVI yfft SYB2_HUMAN : 86- 112: aaklk RKywWknlkmMiIlGvIcAIILiIIIV yfss SYB2_XENLA : 52- 78: aaklk RKywWknmkmMiImGvIcAIILiIIIV yfst SYBR_ARATH : 185- 208: gtqmr RKm-Wfqn--MkIkLiVlAIIIaLILI iilsi SYB_APLCA : 76- 102: agklk RKywWknckmMlIlGaIiGVIViIIIV wvvts SYB_DROME : 102- 128: agklk RKqwWanmkmMiIlGvIaVVLLiIVLV svwps SYB_LOLPE : 95- 121: agklk RKfwWknckmMiIlGgIvAVIVtVIIV waat SYB_TORCA : 90- 116: aaklk RKywWknckmMiMlGgIgAIIViVIII yfft J 10: 43.9008 10( 10) K-x-[DES]-[ENQ]-L-x(2)-[QRS]-A-[DEQ]-[ADGQ]-[FL]-x(2)-[GQ]-[AG]-[NST]-[QR]-x-[ER] Occurences: 10(10) SNC1_YEAST : 63- 82: tsied KaDNLavSAQGFkrGANRvR kamwy SNC2_YEAST : 62- 81: tsied KaDNLaiSAQGFkrGANRvR kqmww SYB1_HUMAN : 61- 80: lerdq KlSELddRADALqaGASQfE ssaak SYB2_HUMAN : 59- 78: lerdq KlSELddRADALqaGASQfE tsaak SYB2_XENLA : 25- 44: lerdt KlSELddRADALqaGASQfE tsaak SYBR_ARATH : 165- 184: ellvd KtENLrsQAQDFrtQGTQmR rkmwf SYB_APLCA : 49- 68: ldrdq KiSQLddRAEALqaGASQfE asagk SYB_DROME : 75- 94: lerdq KlSELgeRADQLeqGASQsE qqagk SYB_LOLPE : 68- 87: lerds KiSELddRADALqaGASQfE asagk SYB_TORCA : 63- 82: lerdq KlSELddRADALqaGASQfE ssaak K 11: 32.1019 10( 10) L-x(2)-[GQS]-A-x(0,1)-Q-x(4)-[AGQ]-[AG]-x(3)-R-[KR]-x(2)-W Occurences: 10(10) SNC1_YEAST : 67- 86: dkadn LavSA-QgfkrGAnrvRKamW ykdlk SNC2_YEAST : 66- 85: dkadn LaiSA-QgfkrGAnrvRKqmW wkdlk SYB1_HUMAN : 72- 92: drada LqaGAsQfessAAklkRKywW knckm SYB2_HUMAN : 70- 90: drada LqaGAsQfetsAAklkRKywW knlkm SYB2_XENLA : 36- 56: drada LqaGAsQfetsAAklkRKywW knmkm SYBR_ARATH : 169- 188: dkten LrsQA-QdfrtQGtqmRRkmW fqnmk SYB_APLCA : 60- 80: draea LqaGAsQfeasAGklkRKywW knckm SYB_DROME : 86- 106: eradq LeqGAsQseqqAGklkRKqwW anmkm SYB_LOLPE : 79- 99: drada LqaGAsQfeasAGklkRKfwW knckm SYB_TORCA : 74- 94: drada LqaGAsQfessAAklkRKywW knckm L 12: 26.5937 10( 10) R-x(5)-V-x(0,1)-E-x(2)-[DENQST]-x(3)-[ENRS]-x-[DEGT]-[DES]-x-[AI]-[ADG] Occurences: 10(10) SNC1_YEAST : 44- 65: tvgim RdninkVaErgErltSiEDkAD nlavs SNC2_YEAST : 43- 64: tvgim RdninkVaErgErltSiEDkAD nlais SYB1_HUMAN : 49- 70: vvdii RvnvdkVlErdQklsElDDrAD alqag SYB2_HUMAN : 47- 68: vvdim RvnvdkVlErdQklsElDDrAD alqag SYB2_XENLA : 13- 34: vvdim RvnvdkVlErdTklsElDDrAD alqag SYBR_ARATH : 13- 33: ysfva RgtvilV-EftDfkgNfTSiAA qclqk SYB_APLCA : 143- 163: ggrqq RphsqlV-ErrNvlrRtEDhIG crphi SYB_DROME : 63- 84: vvgim RvnvekVlErdQklsElGErAD qleqg SYB_LOLPE : 56- 77: vvdim RvnvdkVlErdSkisElDDrAD alqag SYB_TORCA : 51- 72: vvdii RvnvdkVlErdQklsElDDrAD alqag M 13: 20.0781 10( 10) V-x(2)-[GIV]-x(2)-I-x(1,2)-V-x-[FV]-[DEST] Occurences: 10(10) SNC1_YEAST : 105- 116: iiill VviIvpIa-VhFS r SNC2_YEAST : 104- 115: viill VviIvpIv-VhFT SYB1_HUMAN : 41- 53: qtqaq VeeVvdIirVnVD kvler SYB2_HUMAN : 39- 51: qtqaq VdeVvdImrVnVD kvler SYB2_XENLA : 5- 17: tqaq VdeVvdImrVnVD kvler SYBR_ARATH : 11- 22: liysf VarGtvIl-VeFT dfkgn SYB_APLCA : 29- 41: qtqaq VdeVvdImrVnVE kvldr SYB_DROME : 55- 67: qtqak VdeVvgImrVnVE kvler SYB_LOLPE : 48- 60: qtqaq VeeVvdImrVnVD kvler SYB_TORCA : 43- 55: qtqaq VeeVvdIirVnVD kvler N 14: 18.6713 11( 10) I-I-x(1,3)-I-[AILV]-[AIV]-x-[FILV] Occurences: 11(10) SNC1_YEAST : 107- 115: illvv IIvp-IAVhF sr SNC2_YEAST : 106- 114: illvv IIvp-IVVhF t SYB1_HUMAN : 107- 116: gaica IIvvvIVIyF ft SYB2_HUMAN : 105- 112: gvica IIl--IIIiV yfss SYB2_HUMAN : 105- 114: gvica IIliiIIVyF ss SYB2_XENLA : 71- 78: gvica IIl--IIIiV yfst SYB2_XENLA : 71- 80: gvica IIliiIIVyF st SYBR_ARATH : 201- 210: livla IIialILIiI lsicg SYBR_ARATH : 202- 210: ivlai IIal-ILIiI lsicg SYB_APLCA : 92- 100: lilga IIgv-IVIiI ivwvv SYB_DROME : 113- 122: nmkmm IIlgvIAVvL liivl SYB_LOLPE : 106- 115: nckmm IIlggIVAvI vtvii SYB_TORCA : 109- 116: ggiga IIv--IVIiI yfft SYB_TORCA : 109- 118: ggiga IIvivIIIyF ft O 15: 17.3411 10( 10) I-I-x(3,4)-I-[AIV]-[AIV] Occurences: 10(10) SNC1_YEAST : 101- 109: lalvi IIllvvIIV piavh SNC2_YEAST : 100- 108: lflvv IIllvvIIV pivvh SYB1_HUMAN : 107- 114: gaica IIvvv-IVI yfft SYB2_HUMAN : 105- 112: gvica IIlii-IIV yfss SYB2_XENLA : 71- 78: gvica IIlii-IIV yfst SYBR_ARATH : 202- 210: ivlai IIalilIII lsicg SYB_APLCA : 92- 100: lilga IIgvivIII ivwvv SYB_DROME : 113- 120: nmkmm IIlgv-IAV vllii SYB_LOLPE : 106- 113: nckmm IIlgg-IVA vivtv SYB_TORCA : 109- 116: ggiga IIviv-III yfft P 16: 14.9412 14( 10) A-x(3,4)-R-x(0,1)-K-x(2)-[FW] Occurences: 14(10) SNC1_YEAST : 78- 86: gfkrg Anrv-R-KamW ykdlk SNC2_YEAST : 77- 85: gfkrg Anrv-R-KqmW wkdlk SYB1_HUMAN : 83- 92: qfess AaklkR-KywW knckm SYB1_HUMAN : 84- 92: fessa Aklk-R-KywW knckm SYB2_HUMAN : 81- 90: qfets AaklkR-KywW knlkm SYB2_HUMAN : 82- 90: fetsa Aklk-R-KywW knlkm SYB2_XENLA : 47- 56: qfets AaklkR-KywW knmkm SYB2_XENLA : 48- 56: fetsa Aklk-R-KywW knmkm SYBR_ARATH : 80- 89: rqipm Afle-RvKedF nkryg SYB_APLCA : 71- 80: qfeas AgklkR-KywW knckm SYB_DROME : 97- 106: qseqq AgklkR-KqwW anmkm SYB_LOLPE : 90- 99: qfeas AgklkR-KfwW knckm SYB_TORCA : 85- 94: qfess AaklkR-KywW knckm SYB_TORCA : 86- 94: fessa Aklk-R-KywW knckm Q 17: 14.7038 10( 10) K-x(0,1)-L-K-x-[HKR] Occurences: 10(10) SNC1_YEAST : 88- 93: kamwy KdLKmK mclal SNC2_YEAST : 87- 92: kqmww KdLKmR mclfl SYB1_HUMAN : 85- 89: essaa K-LKrK ywwkn SYB2_HUMAN : 83- 87: etsaa K-LKrK ywwkn SYB2_XENLA : 49- 53: etsaa K-LKrK ywwkn SYBR_ARATH : 113- 117: kefgs K-LKeH mqycm SYB_APLCA : 73- 77: easag K-LKrK ywwkn SYB_DROME : 99- 103: eqqag K-LKrK qwwan SYB_LOLPE : 92- 96: easag K-LKrK fwwkn SYB_TORCA : 87- 91: essaa K-LKrK ywwkn R 18: 14.2546 10( 10) I-x(3,4)-N-x-[DEGN]-K Occurences: 10(10) SNC1_YEAST : 42- 49: ddtvg Imrd-NiNK vaerg SNC2_YEAST : 41- 48: ddtvg Imrd-NiNK vaerg SYB1_HUMAN : 47- 54: eevvd Iirv-NvDK vlerd SYB2_HUMAN : 45- 52: devvd Imrv-NvDK vlerd SYB2_XENLA : 11- 18: devvd Imrv-NvDK vlerd SYBR_ARATH : 213- 221: iiils IcggfNcGK SYB_APLCA : 35- 42: devvd Imrv-NvEK vldrd SYB_DROME : 61- 68: devvg Imrv-NvEK vlerd SYB_LOLPE : 54- 61: eevvd Imrv-NvDK vlerd SYB_TORCA : 49- 56: eevvd Iirv-NvDK vlerd S 19: 11.5102 11( 10) R-x(0,1)-K-x(1,2)-W Occurences: 11(10) SNC1_YEAST : 82- 86: ganrv R-KamW ykdlk SNC2_YEAST : 81- 85: ganrv R-KqmW wkdlk SYB1_HUMAN : 88- 91: aaklk R-Ky-W wknck SYB2_HUMAN : 86- 89: aaklk R-Ky-W wknlk SYB2_XENLA : 52- 55: aaklk R-Ky-W wknmk SYBR_ARATH : 184- 188: qgtqm RrKm-W fqnmk SYBR_ARATH : 185- 188: gtqmr R-Km-W fqnmk SYB_APLCA : 76- 79: agklk R-Ky-W wknck SYB_DROME : 102- 105: agklk R-Kq-W wanmk SYB_LOLPE : 95- 98: agklk R-Kf-W wknck SYB_TORCA : 90- 93: aaklk R-Ky-W wknck T 20: 11.5102 18( 10) V-x(1,3)-I-I Occurences: 18(10) SNC1_YEAST : 99- 102: mclal Vi--II llvvi SNC1_YEAST : 105- 108: iiill Vv--II vpiav SNC2_YEAST : 98- 101: mclfl Vv--II llvvi SNC2_YEAST : 104- 107: viill Vv--II vpivv SYB1_HUMAN : 44- 48: aqvee Vvd-II rvnvd SYB1_HUMAN : 45- 48: qveev Vd--II rvnvd SYB2_HUMAN : 101- 106: miilg VicaII liiii SYB2_XENLA : 67- 72: miimg VicaII liiii SYBR_ARATH : 198- 202: kikli Vla-II ialil SYBR_ARATH : 198- 203: kikli VlaiII alili SYB_APLCA : 95- 99: gaiig Viv-II iivwv SYB_APLCA : 95- 100: gaiig ViviII ivwvv SYB_APLCA : 97- 100: iigvi Vi--II ivwvv SYB_APLCA : 97- 101: iigvi Vii-II vwvvt SYB_DROME : 120- 125: lgvia VvllII vlvsv SYB_DROME : 121- 125: gviav Vll-II vlvsv SYB_LOLPE : 116- 120: ivavi Vtv-II vwaat SYB_TORCA : 46- 50: aqvee Vvd-II rvnvd SYB_TORCA : 47- 50: qveev Vd--II rvnvd SYB_TORCA : 111- 115: igaii Viv-II iyfft SYB_TORCA : 111- 116: igaii ViviII yfft SYB_TORCA : 113- 116: aiivi Vi--II yfft Number of patterns evaluated by Pratt:600 Total running time: 0 seconds